Carg07183 (gene) Silver-seed gourd

Overview
NameCarg07183
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptiontranslocator protein homolog
LocationCucurbita_argyrosperma_scaffold_017 : 518426 .. 518977 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACCGAGCTCAAGCACCGAACAACAGGCGACTCCCCCACCGTCCCCGCCGCCGCCGCCGCCGCCGACGAGGTTAGCGCGAAGAGAGAGAAGAACAAGGCTATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACTCTCCTCTCCATCCTCCTCCTTGCCAGACCCAAAAACTACTACCCCTCCGCCACGAAGCCCTTCTGGGTGCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAGGCCCAACGCGCTGTATCTTTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTTGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCGTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGAGGAGTGAACGCGATTGCGGCGGACTTGGTTAGGCCTTGTTGGTTTGGTCTGTTTTTCTTACTATCGTGA

mRNA sequence

ATGGCTTCCACCGAGCTCAAGCACCGAACAACAGGCGACTCCCCCACCGTCCCCGCCGCCGCCGCCGCCGCCGACGAGGTTAGCGCGAAGAGAGAGAAGAACAAGGCTATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACTCTCCTCTCCATCCTCCTCCTTGCCAGACCCAAAAACTACTACCCCTCCGCCACGAAGCCCTTCTGGGTGCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAGGCCCAACGCGCTGTATCTTTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTTGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCGTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGAGGAGTGAACGCGATTGCGGCGGACTTGGTTAGGCCTTGTTGGTTTGGTCTGTTTTTCTTACTATCGTGA

Coding sequence (CDS)

ATGGCTTCCACCGAGCTCAAGCACCGAACAACAGGCGACTCCCCCACCGTCCCCGCCGCCGCCGCCGCCGCCGACGAGGTTAGCGCGAAGAGAGAGAAGAACAAGGCTATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACTCTCCTCTCCATCCTCCTCCTTGCCAGACCCAAAAACTACTACCCCTCCGCCACGAAGCCCTTCTGGGTGCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAGGCCCAACGCGCTGTATCTTTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTTGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCGTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGAGGAGTGAACGCGATTGCGGCGGACTTGGTTAGGCCTTGTTGGTTTGGTCTGTTTTTCTTACTATCGTGA

Protein sequence

MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFFLLS
Homology
[Close]
BLAST of Carg07183 vs. NCBI nr
Match: XP_022953735.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 326.6 bits (836), Expect = 5.3e-86
Identity = 171/181 (94.48%), Postives = 172/181 (95.03%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPAVP---AAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT
Sbjct: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAW+GLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC     F
Sbjct: 121 LYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 178

Query: 181 L 182
           L
Sbjct: 181 L 178

[Close]
BLAST of Carg07183 vs. NCBI nr
Match: XP_022992488.1 (translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 6.5e-84
Identity = 166/181 (91.71%), Postives = 169/181 (93.37%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP VP   AAADEVS KR KNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSPAVP---AAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLL++PKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNALYLYT
Sbjct: 61  LLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPC     F
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 178

Query: 181 L 182
           L
Sbjct: 181 L 178

[Close]
BLAST of Carg07183 vs. NCBI nr
Match: XP_023548365.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.8 bits (808), Expect = 9.3e-83
Identity = 165/181 (91.16%), Postives = 168/181 (92.82%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MASTELKHRTTGDSP    AA AADE SAKR KNKAIAKRGLKSLAVAVSIPIAVTLLSI
Sbjct: 1   MASTELKHRTTGDSP----AAPAADEASAKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
           LLL+RPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQA+PNA+YLYT
Sbjct: 61  LLLSRPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNAVYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVN IAADLVRPC     F
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 177

Query: 181 L 182
           L
Sbjct: 181 L 177

[Close]
BLAST of Carg07183 vs. NCBI nr
Match: XP_004136174.1 (PREDICTED: translocator protein homolog [Cucumis sativus] >KGN44921.1 hypothetical protein Csa_7G396370 [Cucumis sativus])

HSP 1 Score: 237.7 bits (605), Expect = 3.2e-59
Identity = 120/175 (68.57%), Postives = 142/175 (81.14%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MAST+LKHR T DS T  +  +A D    K+ KNK IAKRGL+SLA+A+SIP+++TL  I
Sbjct: 1   MASTDLKHRKTDDS-TPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFI 60

Query: 61  LLLARPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLY 120
           LL +  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF ARPNALYLY
Sbjct: 61  LLFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLY 120

Query: 121 TLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC 175
            LY VLC+ WY L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PC
Sbjct: 121 GLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPC 174

[Close]
BLAST of Carg07183 vs. NCBI nr
Match: XP_022151009.1 (translocator protein homolog [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 1.6e-37
Identity = 96/181 (53.04%), Postives = 112/181 (61.88%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MAS +LKHR     PT    +A A                GLKS            LL++
Sbjct: 1   MASPDLKHR----KPTESDDSATA---XXXXXXXXXXXXXGLKSXXXXXXXXXXXXLLAV 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
            LL+ P  + PS+ KPFW PSA  VN GS ASSLLMG + WL WA+GGF + PNALYLYT
Sbjct: 61  YLLSDPTKFPPSSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYT 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
           LY++LC  WYGL+LGAG+  L +VACL KTA LVGCDRLFR VN IAADLV+PC     F
Sbjct: 121 LYVLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 174

Query: 181 L 182
           L
Sbjct: 181 L 174

[Close]
BLAST of Carg07183 vs. TAIR10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related)

HSP 1 Score: 124.8 bits (312), Expect = 5.5e-29
Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAA-----AADEVSAKREKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D      A A     +AD+   KR++ +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  +PNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC 175
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PC
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPC 179

[Close]
BLAST of Carg07183 vs. Swiss-Prot
Match: sp|O82245|TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-27
Identity = 69/179 (38.55%), Postives = 102/179 (56.98%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAA-----AADEVSAKREKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D      A A     +AD+   KR++ +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  +PNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC 175
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PC
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPC 179

[Close]
BLAST of Carg07183 vs. TrEMBL
Match: tr|A0A0A0KAU9|A0A0A0KAU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.1e-59
Identity = 120/175 (68.57%), Postives = 142/175 (81.14%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           MAST+LKHR T DS T  +  +A D    K+ KNK IAKRGL+SLA+A+SIP+++TL  I
Sbjct: 1   MASTDLKHRKTDDS-TPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFI 60

Query: 61  LLLARPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLY 120
           LL +  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF ARPNALYLY
Sbjct: 61  LLFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLY 120

Query: 121 TLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPC 175
            LY VLC+ WY L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PC
Sbjct: 121 GLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPC 174

[Close]
BLAST of Carg07183 vs. TrEMBL
Match: tr|A0A1U8MT02|A0A1U8MT02_GOSHI (translocator protein homolog OS=Gossypium hirsutum OX=3635 GN=LOC107940992 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.1e-30
Identity = 82/181 (45.30%), Postives = 105/181 (58.01%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           M S  LKHR+  D P      +     + +REK  A+AKRGL+SL +AVS P+++TLL+I
Sbjct: 1   MESQNLKHRSR-DDPRFATTTSNEKNRANRREKRMAMAKRGLRSLVIAVSFPLSLTLLNI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
            L    +  Y S  KPFW P   +++ G LASS +MG+S+W  W EGGF  +P AL LY 
Sbjct: 61  YLFGSGRG-YASLAKPFWFPPLWLLHTGCLASSFVMGLSAWFVWVEGGFHVKPTALSLYL 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
            YL L MAW+  VL  G+ W G +  L    TLVGC R F  VN IA + V PC     F
Sbjct: 121 GYLGLSMAWHPTVLWMGASWAGLLVSLAMVGTLVGCSRDFGKVNPIAGNSVMPCLAWAAF 179

Query: 181 L 182
           L
Sbjct: 181 L 179

[Close]
BLAST of Carg07183 vs. TrEMBL
Match: tr|A0A0D2SYA6|A0A0D2SYA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G011200 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.1e-30
Identity = 82/181 (45.30%), Postives = 105/181 (58.01%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           M S  LKHR+  D P      +     + +REK  A+AKRGL+SL +AVS P+++TLL+I
Sbjct: 1   MESQNLKHRSR-DDPRFTTTTSNEKNRANRREKRMAMAKRGLRSLVIAVSFPLSLTLLNI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
            L    +  Y S  KPFW P   +++ G LASS +MG+S+W  W EGGF  +P AL LY 
Sbjct: 61  YLFGSGRG-YASLAKPFWFPPLWLLHTGCLASSFVMGLSAWFVWVEGGFHVKPTALSLYL 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
            YL L MAW+  VL  G+ W G +  L    TLVGC R F  VN IA + V PC     F
Sbjct: 121 GYLGLSMAWHPTVLWMGASWAGLLVSLAMVGTLVGCSRDFGKVNPIAGNSVMPCLAWAAF 179

Query: 181 L 182
           L
Sbjct: 181 L 179

[Close]
BLAST of Carg07183 vs. TrEMBL
Match: tr|A0A2P5QXB5|A0A2P5QXB5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23893 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 6.1e-30
Identity = 82/181 (45.30%), Postives = 105/181 (58.01%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSI 60
           M S  LKHR+  D P      +     + +REK  A+AKRGL+SL +AVS P+++TLL+I
Sbjct: 1   MESQNLKHRSR-DDPRFATTTSNEKNRANRREKRMAMAKRGLRSLVIAVSFPLSLTLLNI 60

Query: 61  LLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120
            L    +  Y S  KPFW P   +++ G LASS +MG+S+W  W EGGF  +P AL LY 
Sbjct: 61  YLFGSGRG-YASLAKPFWFPPLWLLHTGCLASSFVMGLSAWFVWVEGGFHVKPTALSLYL 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFGLFF 180
            YL L MAW+  VL  G+ W G +  L    TLVGC R F  VN IA + V PC     F
Sbjct: 121 GYLGLSMAWHPTVLWMGASWAGLLVSLAMVGTLVGCSRDFGKVNPIAGNSVMPCLAWAAF 179

Query: 181 L 182
           L
Sbjct: 181 L 179

[Close]
BLAST of Carg07183 vs. TrEMBL
Match: tr|A0A2P6PWM8|A0A2P6PWM8_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0293581 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.9e-30
Identity = 80/184 (43.48%), Postives = 109/184 (59.24%), Query Frame = 0 

Query: 1   MASTELKHRTTGDSPTVPAAAAAA---DEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTL 60
           M S  LK R   + P    + AA    +   +KR+    +AKRGL+SLAVAVS+P+A+ L
Sbjct: 1   MDSQNLKQRRVAEDPNTTTSTAATMNKNNYPSKRDMRMKMAKRGLRSLAVAVSLPVALHL 60

Query: 61  LSILLLARPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALY 120
           ++I L     + Y + +KPFW P         LASS LMG+S+WL WAEGGF   P A  
Sbjct: 61  ITIYL--GSTDSYRTTSKPFWFPPLWGFRLTCLASSFLMGLSAWLVWAEGGFHKNPVAFP 120

Query: 121 LYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCWFG 180
           +Y   LVL +AW  +V GAG+ W+G V C+G    LVGC ++F+ VN  A DL++PC   
Sbjct: 121 VYLSQLVLSLAWDPIVFGAGAPWVGLVVCMGMFGALVGCSKVFQDVNPTACDLMKPCLAW 180

Query: 181 LFFL 182
           + FL
Sbjct: 181 VAFL 182

The following BLAST results are available for this feature:
BLAST of Carg07183 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022953735.15.3e-8694.48translocator protein homolog [Cucurbita moschata][more]
XP_022992488.16.5e-8491.71translocator protein homolog [Cucurbita maxima][more]
XP_023548365.19.3e-8391.16translocator protein homolog [Cucurbita pepo subsp. pepo][more]
XP_004136174.13.2e-5968.57PREDICTED: translocator protein homolog [Cucumis sativus] >KGN44921.1 hypothetic... [more]
XP_022151009.11.6e-3753.04translocator protein homolog [Momordica charantia][more]
BLAST of Carg07183 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47770.15.5e-2938.55TSPO(outer membrane tryptophan-rich sensory protein)-related[more]
BLAST of Carg07183 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O82245|TSPO_ARATH1.0e-2738.55Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1[more]
BLAST of Carg07183 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KAU9|A0A0A0KAU9_CUCSA2.1e-5968.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=4 SV=1[more]
tr|A0A1U8MT02|A0A1U8MT02_GOSHI6.1e-3045.30translocator protein homolog OS=Gossypium hirsutum OX=3635 GN=LOC107940992 PE=4 ... [more]
tr|A0A0D2SYA6|A0A0D2SYA6_GOSRA6.1e-3045.30Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G011200 PE=4 ... [more]
tr|A0A2P5QXB5|A0A2P5QXB5_GOSBA6.1e-3045.30Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD23893 PE=4 SV... [more]
tr|A0A2P6PWM8|A0A2P6PWM8_ROSCH7.9e-3043.48Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0293581 PE=4... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR038330TspO/MBR-related_sf
IPR004307TspO_MBR
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07183-RACarg07183-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004307TspO/MBR-related proteinPFAMPF03073TspO_MBRcoord: 48..178
e-value: 4.4E-13
score: 49.3
IPR004307TspO/MBR-related proteinPANTHERPTHR10057PERIPHERAL-TYPE BENZODIAZEPINE RECEPTORcoord: 30..175
IPR004307TspO/MBR-related proteinCDDcd15904TSPO_MBRcoord: 45..180
e-value: 1.33507E-12
score: 60.2032
IPR038330TspO/MBR-related superfamilyGENE3DG3DSA:1.20.1260.100coord: 40..182
e-value: 6.5E-14
score: 53.7
NoneNo IPR availablePANTHERPTHR10057:SF6SUBFAMILY NOT NAMEDcoord: 30..175

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07183Cla015051Watermelon (97103) v1carwmB0106
Carg07183Csa7G396370Cucumber (Chinese Long) v2carcuB0119
Carg07183MELO3C016017Melon (DHL92) v3.5.1carmeB0110
Carg07183ClCG09G006030Watermelon (Charleston Gray)carwcgB0108
Carg07183CSPI07G17310Wild cucumber (PI 183967)carcpiB0124
Carg07183Cucsa.205710Cucumber (Gy14) v1carcgyB0132
Carg07183Cucsa.253100Cucumber (Gy14) v1carcgyB0133
Carg07183CmaCh17G011010Cucurbita maxima (Rimu)carcmaB0142
Carg07183CmaCh06G014990Cucurbita maxima (Rimu)carcmaB0145
Carg07183CmoCh17G010760Cucurbita moschata (Rifu)carcmoB0152
Carg07183Lsi02G023870Bottle gourd (USVL1VR-Ls)carlsiB098
Carg07183Cp4.1LG12g05440Cucurbita pepo (Zucchini)carcpeB0158
Carg07183Cp4.1LG08g04900Cucurbita pepo (Zucchini)carcpeB0165
Carg07183CsGy7G015750Cucumber (Gy14) v2carcgybB0120
Carg07183MELO3C016017.2Melon (DHL92) v3.6.1carmedB0112
Carg07183CsaV3_7G029110Cucumber (Chinese Long) v3carcucB0128
Carg07183Cla97C05G087600Watermelon (97103) v2carwmbB0113
Carg07183Cla97C09G168590Watermelon (97103) v2carwmbB0117
Carg07183Bhi01G000717Wax gourdcarwgoB0128
Carg07183Bhi09G000700Wax gourdcarwgoB0133
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg07183Watermelon (97103) v2carwmbB0111
Carg07183Wax gourdcarwgoB0126
Carg07183Silver-seed gourdcarcarB133
Carg07183Cucumber (Gy14) v2carcgybB0117
Carg07183Cucumber (Gy14) v1carcgyB0130
Carg07183Cucurbita maxima (Rimu)carcmaB0141
Carg07183Cucurbita maxima (Rimu)carcmaB0148
Carg07183Cucurbita moschata (Rifu)carcmoB0151
Carg07183Cucurbita moschata (Rifu)carcmoB0157
Carg07183Cucurbita pepo (Zucchini)carcpeB0161
Carg07183Wild cucumber (PI 183967)carcpiB0121
Carg07183Cucumber (Chinese Long) v2carcuB0116
Carg07183Cucumber (Chinese Long) v3carcucB0125
Carg07183Bottle gourd (USVL1VR-Ls)carlsiB099
Carg07183Melon (DHL92) v3.5.1carmeB0116
Carg07183Melon (DHL92) v3.6.1carmedB0119
Carg07183Watermelon (Charleston Gray)carwcgB0110
Carg07183Watermelon (97103) v1carwmB0108