Cucsa.253100 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.253100
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionTSPO/MBR family protein
Locationscaffold02229 : 1840873 .. 1841354 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGCGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACTCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGA

mRNA sequence

AATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGCGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACTCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGA

Coding sequence (CDS)

AATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGCGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACTCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGA

Protein sequence

SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL*
Homology
[Close]
BLAST of Cucsa.253100 vs. Swiss-Prot
Match: TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.8e-32
Identity = 68/151 (45.03%), Postives = 91/151 (60.26%), Query Frame = 1 

Query: 2   KYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSS 61
           K   AKR L+SL V+VA PV +T+ A +  G S  +        WI PLWL+  + + SS
Sbjct: 39  KRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASS 98

Query: 62  FLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTL 121
            L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + S V      +     L
Sbjct: 99  GLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAAL 158

Query: 122 FACYLAFKRVNPFAKDLMKPCLAWTAYLSAV 153
           F CY AF  ++P A +L+KPCLAW A+++AV
Sbjct: 159 FGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

[Close]
BLAST of Cucsa.253100 vs. TrEMBL
Match: A0A0A0L583_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154290 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS 60
           SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS
Sbjct: 14  SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS 73

Query: 61  SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT 120
           SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT
Sbjct: 74  SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT 133

Query: 121 LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 160
           LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL
Sbjct: 134 LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

[Close]
BLAST of Cucsa.253100 vs. TrEMBL
Match: A0A072VGH3_MEDTR (TSPO/MBR family protein OS=Medicago truncatula GN=MTR_2g436790 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.9e-48
Identity = 93/154 (60.39%), Postives = 118/154 (76.62%), Query Frame = 1 

Query: 1   SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS 60
           SK +KAKRALRSL + +AIP++LT+  I LFG S R Y    +P W  PLW I L+++GS
Sbjct: 9   SKRSKAKRALRSLGIGIAIPIALTLTIIILFG-SGRKYNVLAKPFWFAPLWYIHLATLGS 68

Query: 61  SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT 120
           SF +GLAAWLVWADGGF G ++AL  YIAH+SLS+VW+PLVLV+ +  +A    +LDC T
Sbjct: 69  SFFMGLAAWLVWADGGFQGETDALSFYIAHVSLSIVWHPLVLVMNAYWLALASGILDCAT 128

Query: 121 LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTY 155
           LF  YL FK+VNPFAKDL KPCLAWTAYL+ +++
Sbjct: 129 LFIVYLRFKKVNPFAKDLAKPCLAWTAYLTLISF 161

[Close]
BLAST of Cucsa.253100 vs. TrEMBL
Match: I1L102_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G044900 PE=4 SV=2)

HSP 1 Score: 194.5 bits (493), Expect = 9.8e-47
Identity = 88/157 (56.05%), Postives = 120/157 (76.43%), Query Frame = 1 

Query: 1   SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS 60
           +K ++A+RALRSLA+ +A+P +LT+  I LFG   ++    ++P W  PLW I LS +GS
Sbjct: 9   TKKSQARRALRSLAIGIAVPFTLTLTIIILFGSGRKYNQIISKPFWFAPLWFIHLSILGS 68

Query: 61  SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT 120
           SF +GLAAWLVWADGGF G ++A+ LYIAH+SLS+VW+PLVLV+ +  +A + C+++ VT
Sbjct: 69  SFFMGLAAWLVWADGGFQGETDAMSLYIAHVSLSIVWHPLVLVMGAYWLALISCLVNFVT 128

Query: 121 LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFI 158
           LF CYL F++VNPFAKDL KPCLAW AYL  V++  I
Sbjct: 129 LFLCYLRFRKVNPFAKDLAKPCLAWAAYLCLVSFKLI 165

[Close]
BLAST of Cucsa.253100 vs. TrEMBL
Match: W9RVG5_9ROSA (Translocator-like protein OS=Morus notabilis GN=L484_023527 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.2e-46
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = 1 

Query: 2   KYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSS 61
           K  KAKRAL +L ++V++P+SLT+  I LFG S + Y +  +P W  PLW + L+S+GSS
Sbjct: 38  KKAKAKRALWTLFIAVSVPLSLTMTIILLFG-SGKRYRSLTKPFWFPPLWFVHLASLGSS 97

Query: 62  FLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTL 121
           FL G AAWL WADGGFH   +ALPLYIA +SLS+VW+PLVLVI +  +  +FC++   TL
Sbjct: 98  FLTGFAAWLFWADGGFHAHPDALPLYIAQISLSIVWDPLVLVIGAASLGLVFCLVHFGTL 157

Query: 122 FACYLAFKRVNPFAKDLMKPCLAWTAYLSAV 153
           FACY +F+RVNPFAKDLMKPCLAW AYL+ V
Sbjct: 158 FACYRSFRRVNPFAKDLMKPCLAWVAYLTLV 187

[Close]
BLAST of Cucsa.253100 vs. TrEMBL
Match: A0A0L9TBZ9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan468s008300 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.8e-45
Identity = 88/153 (57.52%), Postives = 118/153 (77.12%), Query Frame = 1 

Query: 2   KYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSS 61
           K ++A+RALRSLA+ +A+P SLT+  I LFG S R Y + ++P W  PLW I L+S+ SS
Sbjct: 10  KKSQARRALRSLAIGLAVPFSLTLTIIILFG-SGRRYNSVSKPFWFAPLWFINLASLASS 69

Query: 62  FLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTL 121
             +GLAAWLVWADGGF G ++A+ LYIAHLSLS+VW+PLVL++ +  +A L C+++  TL
Sbjct: 70  LFMGLAAWLVWADGGFQGETDAMSLYIAHLSLSIVWHPLVLIMAAYWLALLSCIINFCTL 129

Query: 122 FACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTY 155
           F CYL F++VNPFAKDL KPCLA+  YLS V++
Sbjct: 130 FMCYLRFRKVNPFAKDLAKPCLAFALYLSLVSF 161

[Close]
BLAST of Cucsa.253100 vs. TAIR10
Match: AT2G47770.1 (AT2G47770.1 TSPO(outer membrane tryptophan-rich sensory protein)-related)

HSP 1 Score: 137.9 bits (346), Expect = 5.5e-33
Identity = 68/151 (45.03%), Postives = 91/151 (60.26%), Query Frame = 1 

Query: 2   KYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSS 61
           K   AKR L+SL V+VA PV +T+ A +  G S  +        WI PLWL+  + + SS
Sbjct: 39  KRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASS 98

Query: 62  FLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTL 121
            L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + S V      +     L
Sbjct: 99  GLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAAL 158

Query: 122 FACYLAFKRVNPFAKDLMKPCLAWTAYLSAV 153
           F CY AF  ++P A +L+KPCLAW A+++AV
Sbjct: 159 FGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

[Close]
BLAST of Cucsa.253100 vs. NCBI nr
Match: gi|449433405|ref|XP_004134488.1| (PREDICTED: translocator protein homolog [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 2.6e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS 60
           SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS
Sbjct: 14  SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS 73

Query: 61  SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT 120
           SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT
Sbjct: 74  SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT 133

Query: 121 LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 160
           LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL
Sbjct: 134 LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

[Close]
BLAST of Cucsa.253100 vs. NCBI nr
Match: gi|922389660|ref|XP_013463253.1| (TSPO/MBR family protein [Medicago truncatula])

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 93/154 (60.39%), Postives = 118/154 (76.62%), Query Frame = 1 

Query: 1   SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS 60
           SK +KAKRALRSL + +AIP++LT+  I LFG S R Y    +P W  PLW I L+++GS
Sbjct: 9   SKRSKAKRALRSLGIGIAIPIALTLTIIILFG-SGRKYNVLAKPFWFAPLWYIHLATLGS 68

Query: 61  SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT 120
           SF +GLAAWLVWADGGF G ++AL  YIAH+SLS+VW+PLVLV+ +  +A    +LDC T
Sbjct: 69  SFFMGLAAWLVWADGGFQGETDALSFYIAHVSLSIVWHPLVLVMNAYWLALASGILDCAT 128

Query: 121 LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTY 155
           LF  YL FK+VNPFAKDL KPCLAWTAYL+ +++
Sbjct: 129 LFIVYLRFKKVNPFAKDLAKPCLAWTAYLTLISF 161

[Close]
BLAST of Cucsa.253100 vs. NCBI nr
Match: gi|356532573|ref|XP_003534846.1| (PREDICTED: translocator protein homolog [Glycine max])

HSP 1 Score: 194.5 bits (493), Expect = 1.4e-46
Identity = 88/157 (56.05%), Postives = 120/157 (76.43%), Query Frame = 1 

Query: 1   SKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGS 60
           +K ++A+RALRSLA+ +A+P +LT+  I LFG   ++    ++P W  PLW I LS +GS
Sbjct: 9   TKKSQARRALRSLAIGIAVPFTLTLTIIILFGSGRKYNQIISKPFWFAPLWFIHLSILGS 68

Query: 61  SFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVT 120
           SF +GLAAWLVWADGGF G ++A+ LYIAH+SLS+VW+PLVLV+ +  +A + C+++ VT
Sbjct: 69  SFFMGLAAWLVWADGGFQGETDAMSLYIAHVSLSIVWHPLVLVMGAYWLALISCLVNFVT 128

Query: 121 LFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFI 158
           LF CYL F++VNPFAKDL KPCLAW AYL  V++  I
Sbjct: 129 LFLCYLRFRKVNPFAKDLAKPCLAWAAYLCLVSFKLI 165

[Close]
BLAST of Cucsa.253100 vs. NCBI nr
Match: gi|703105572|ref|XP_010098281.1| (Translocator-like protein [Morus notabilis])

HSP 1 Score: 193.4 bits (490), Expect = 3.1e-46
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = 1 

Query: 2   KYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSS 61
           K  KAKRAL +L ++V++P+SLT+  I LFG S + Y +  +P W  PLW + L+S+GSS
Sbjct: 38  KKAKAKRALWTLFIAVSVPLSLTMTIILLFG-SGKRYRSLTKPFWFPPLWFVHLASLGSS 97

Query: 62  FLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTL 121
           FL G AAWL WADGGFH   +ALPLYIA +SLS+VW+PLVLVI +  +  +FC++   TL
Sbjct: 98  FLTGFAAWLFWADGGFHAHPDALPLYIAQISLSIVWDPLVLVIGAASLGLVFCLVHFGTL 157

Query: 122 FACYLAFKRVNPFAKDLMKPCLAWTAYLSAV 153
           FACY +F+RVNPFAKDLMKPCLAW AYL+ V
Sbjct: 158 FACYRSFRRVNPFAKDLMKPCLAWVAYLTLV 187

[Close]
BLAST of Cucsa.253100 vs. NCBI nr
Match: gi|920681101|gb|KOM27921.1| (hypothetical protein LR48_Vigan468s008300 [Vigna angularis])

HSP 1 Score: 190.3 bits (482), Expect = 2.7e-45
Identity = 88/153 (57.52%), Postives = 118/153 (77.12%), Query Frame = 1 

Query: 2   KYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSS 61
           K ++A+RALRSLA+ +A+P SLT+  I LFG S R Y + ++P W  PLW I L+S+ SS
Sbjct: 10  KKSQARRALRSLAIGLAVPFSLTLTIIILFG-SGRRYNSVSKPFWFAPLWFINLASLASS 69

Query: 62  FLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTL 121
             +GLAAWLVWADGGF G ++A+ LYIAHLSLS+VW+PLVL++ +  +A L C+++  TL
Sbjct: 70  LFMGLAAWLVWADGGFQGETDAMSLYIAHLSLSIVWHPLVLIMAAYWLALLSCIINFCTL 129

Query: 122 FACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTY 155
           F CYL F++VNPFAKDL KPCLA+  YLS V++
Sbjct: 130 FMCYLRFRKVNPFAKDLAKPCLAFALYLSLVSF 161

The following BLAST results are available for this feature:
BLAST of Cucsa.253100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TSPO_ARATH9.8e-3245.03Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1[more]
BLAST of Cucsa.253100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L583_CUCSA1.8e-85100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154290 PE=4 SV=1[more]
A0A072VGH3_MEDTR8.9e-4860.39TSPO/MBR family protein OS=Medicago truncatula GN=MTR_2g436790 PE=4 SV=1[more]
I1L102_SOYBN9.8e-4756.05Uncharacterized protein OS=Glycine max GN=GLYMA_09G044900 PE=4 SV=2[more]
W9RVG5_9ROSA2.2e-4659.60Translocator-like protein OS=Morus notabilis GN=L484_023527 PE=4 SV=1[more]
A0A0L9TBZ9_PHAAN1.8e-4557.52Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan468s008300 PE=4 SV=1[more]
BLAST of Cucsa.253100 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47770.15.5e-3345.03 TSPO(outer membrane tryptophan-rich sensory protein)-related[more]
BLAST of Cucsa.253100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433405|ref|XP_004134488.1|2.6e-85100.00PREDICTED: translocator protein homolog [Cucumis sativus][more]
gi|922389660|ref|XP_013463253.1|1.3e-4760.39TSPO/MBR family protein [Medicago truncatula][more]
gi|356532573|ref|XP_003534846.1|1.4e-4656.05PREDICTED: translocator protein homolog [Glycine max][more]
gi|703105572|ref|XP_010098281.1|3.1e-4659.60Translocator-like protein [Morus notabilis][more]
gi|920681101|gb|KOM27921.1|2.7e-4557.52hypothetical protein LR48_Vigan468s008300 [Vigna angularis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004307TspO_MBR
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.253100.1Cucsa.253100.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004307TspO/MBR-related proteinPIRPIRSF005859PBRcoord: 2..159
score: 1.0
IPR004307TspO/MBR-related proteinPANTHERPTHR10057PERIPHERAL-TYPE BENZODIAZEPINE RECEPTORcoord: 4..154
score: 1.7
IPR004307TspO/MBR-related proteinPFAMPF03073TspO_MBRcoord: 16..155
score: 1.2
NoneNo IPR availablePANTHERPTHR10057:SF6SUBFAMILY NOT NAMEDcoord: 4..154
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.253100Cla021740Watermelon (97103) v1cgywmB479
Cucsa.253100Csa3G154290Cucumber (Chinese Long) v2cgycuB366
Cucsa.253100MELO3C006663Melon (DHL92) v3.5.1cgymeB439
Cucsa.253100CSPI03G14400Wild cucumber (PI 183967)cgycpiB383
Cucsa.253100CmaCh17G011010Cucurbita maxima (Rimu)cgycmaB0713
Cucsa.253100CmaCh06G014990Cucurbita maxima (Rimu)cgycmaB0727
Cucsa.253100CmoCh06G014950Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.253100Cp4.1LG12g05440Cucurbita pepo (Zucchini)cgycpeB0669
Cucsa.253100Cp4.1LG08g04900Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.253100MELO3C006663.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.253100CsaV3_3G014620Cucumber (Chinese Long) v3cgycucB387
Cucsa.253100Cla97C05G087600Watermelon (97103) v2cgywmbB452
Cucsa.253100Bhi01G000717Wax gourdcgywgoB522
Cucsa.253100Carg07183Silver-seed gourdcarcgyB0133
Cucsa.253100Carg17343Silver-seed gourdcarcgyB0681
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.253100Wild cucumber (PI 183967)cgycpiB376
Cucsa.253100Cucumber (Chinese Long) v2cgycuB360
Cucsa.253100Melon (DHL92) v3.5.1cgymeB430
Cucsa.253100Watermelon (Charleston Gray)cgywcgB451
Cucsa.253100Watermelon (Charleston Gray)cgywcgB453
Cucsa.253100Watermelon (97103) v1cgywmB483
Cucsa.253100Cucurbita pepo (Zucchini)cgycpeB0671
Cucsa.253100Cucurbita pepo (Zucchini)cgycpeB0678
Cucsa.253100Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.253100Bottle gourd (USVL1VR-Ls)cgylsiB412
Cucsa.253100Bottle gourd (USVL1VR-Ls)cgylsiB420
Cucsa.253100Melon (DHL92) v3.6.1cgymedB425
Cucsa.253100Melon (DHL92) v3.6.1cgymedB427
Cucsa.253100Silver-seed gourdcarcgyB0083
Cucsa.253100Silver-seed gourdcarcgyB0788
Cucsa.253100Silver-seed gourdcarcgyB0960
Cucsa.253100Cucumber (Chinese Long) v3cgycucB382
Cucsa.253100Watermelon (97103) v2cgywmbB453
Cucsa.253100Wax gourdcgywgoB505
Cucsa.253100Cucurbita maxima (Rimu)cgycmaB0703
Cucsa.253100Cucurbita maxima (Rimu)cgycmaB0714
Cucsa.253100Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.253100Cucurbita maxima (Rimu)cgycmaB0731
Cucsa.253100Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.253100Cucurbita moschata (Rifu)cgycmoB0707
Cucsa.253100Cucurbita moschata (Rifu)cgycmoB0720