CsaV3_3G014620 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G014620
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	TspO/MBR-related protein
Location	chr3 : 10900295 .. 10901555 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCTTCCAATCCTCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACCCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGATTGAGGTTTTTGATCATTTGGTGATTTTTGAAAAGATTTGTTTATCACATTGTTTTTTTTTTTTTTTTACTAGGACGTTGTAGAACTTTTTATCACAGTACAAAGAAATTGTTAGGAGATGATTGAAAGGAAAGTTTGTAGAATTAGTGGTATAATTATTTCGGTTCATGCGTTCTTGATCGAACCGTAGGAGATTTTTATGATGAATTTCTTGTTTCTTATTTGACAGCGATCTCGATTTCATGTTTACTTTTTACTTCATAGTCTATTTTATACATACGTTTTGTTCAGTTTTAATGCGTATATTTTGAACGTCCAATCAAAATTGGCTAAATAATTGTAATAATCAACTGATGAAGGGATTAAATCAAGATTTATTGAAAAACACATCACCCTTTGTAGTAATCTAATGATTTGAAGATAATTTGAGTTAAGAAGATCGTTTTTTTTTAAAGTAAAAAATAAAACTAACTTATTTTTTTATCTAACAAATATTTTTTTAAAAAATGTTTATAGGAAGATCACTCTCAACAATATTTCATGAAAAATATTATCATCAAACTTCCAAACAATATTTCATTAAAAATATATTAATCTTTATTTATTATTCCTTTAATTTATGCAAATTTTAAATCCAATATTTACATTACAAAAAAATGATCACGTGGAAACTGTCGTTTCCTTATTACTATGTCAATGTTATTGGAGCATGAAATGTTGTTTATTATACAGTGTCAGATAA

mRNA sequence

ATGCCTTCTTCCAATCCTCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACCCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACTGTCAGATAA

Coding sequence (CDS)

ATGCCTTCTTCCAATCCTCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACCCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACTGTCAGATAA

Protein sequence

MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR

Homology

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: XP_004134488.1 (PREDICTED: translocator protein homolog [Cucumis sativus] >KGN57105.1 hypothetical protein Csa_3G154290 [Cucumis sativus])

HSP 1 Score: 330.5 bits (846), Expect = 3.4e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: XP_016898980.1 (PREDICTED: translocator protein homolog [Cucumis melo])

HSP 1 Score: 316.6 bits (810), Expect = 5.0e-83
Identity = 159/166 (95.78%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           VIAFLFCVLD VTLFACY AF+RVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: XP_023540366.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.8 bits (743), Expect = 3.0e-75
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 57  SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 116

Query: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR++++
Sbjct: 117 LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLL 176

Query: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVT
Sbjct: 177 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVT 220

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: XP_022973726.1 (translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 3.9e-75
Identity = 142/164 (86.59%), Postives = 155/164 (94.51%), Query Frame = 0


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 2   SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 61

Query: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR++++
Sbjct: 62  LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLL 121

Query: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVT
Sbjct: 122 AFLFCVLDFVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVT 165

[Close]

BLAST of CsaV3_3G014620 vs. NCBI nr
Match: XP_022945022.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 8.6e-75
Identity = 142/164 (86.59%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 57  SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 116

Query: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR+ ++
Sbjct: 117 LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLL 176

Query: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVT
Sbjct: 177 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVT 220

[Close]

BLAST of CsaV3_3G014620 vs. TAIR10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related)

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-32
Identity = 70/160 (43.75%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 9   KSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQL 68
           K + + K   AKR L+SL V+VA PV +T+ A +  G S  +        WI PLWL+  
Sbjct: 33  KGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHT 92

Query: 69  SSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCV 128
           + + SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + S V      +
Sbjct: 93  TCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWL 152

Query: 129 LDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR 169
                LF CY AF  ++P A +L+KPCLAW A+++AV V+
Sbjct: 153 GQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVK 192

[Close]

BLAST of CsaV3_3G014620 vs. Swiss-Prot
Match: sp|O82245|TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.2e-31
Identity = 70/160 (43.75%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 9   KSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQL 68
           K + + K   AKR L+SL V+VA PV +T+ A +  G S  +        WI PLWL+  
Sbjct: 33  KGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHT 92

Query: 69  SSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCV 128
           + + SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + S V      +
Sbjct: 93  TCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWL 152

Query: 129 LDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR 169
                LF CY AF  ++P A +L+KPCLAW A+++AV V+
Sbjct: 153 GQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAVNVK 192

[Close]

BLAST of CsaV3_3G014620 vs. Swiss-Prot
Match: sp|Q9GMC9|TSPO_SHEEP (Translocator protein OS=Ovis aries OX=9940 GN=TSPO PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 37/129 (28.68%), Postives = 63/129 (48.84%), Query Frame = 0


Query: 42  FLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWAD-GGFHGGSNA-LPL 101
           ++ G   R Y +  +P W  P W++          +G  ++L+W + GGF   +   L L
Sbjct: 25  YIRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYLIWKELGGFSKEAVVPLGL 84

Query: 102 YIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWT 161
           Y   L+L+  W PL    R +  AF+  +L      A  +A+++V+P A  L+ P LAW 
Sbjct: 85  YAGQLALNWAWPPLFFGARQMGWAFVDLLLTGGMAAATAMAWRQVSPPAACLLYPYLAWL 144

Query: 162 AYLSAVTVR 169
           A+ + +  R
Sbjct: 145 AFAAMLNYR 153

[Close]

BLAST of CsaV3_3G014620 vs. TrEMBL
Match: tr|A0A0A0L583|A0A0A0L583_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=4 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 2.2e-87
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. TrEMBL
Match: tr|A0A1S4DTF2|A0A1S4DTF2_CUCME (translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 3.3e-83
Identity = 159/166 (95.78%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVT 167
           VIAFLFCVLD VTLFACY AF+RVNPFAKDLMKPCLAWTAYLSAVT
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVT 166

[Close]

BLAST of CsaV3_3G014620 vs. TrEMBL
Match: tr|A0A2P5E491|A0A2P5E491_PARAD (TspO/MBR-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008040 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.6e-46
Identity = 96/159 (60.38%), Postives = 119/159 (74.84%), Query Frame = 0


Query: 10  SRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLS 69
           S+ E K  +AKRALRSL ++V+IP+SLT+  I LFG S   Y    +P W  PLWLI L+
Sbjct: 27  SKREKKIFRAKRALRSLFIAVSIPLSLTMTIILLFG-SGHRYRAVPKPFWFPPLWLIHLA 86

Query: 70  SIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVL 129
           S+GSSFL+G A WL WADGGFH  SNALPLYI H+S+SVVW+PLVLVI +  +  +FC++
Sbjct: 87  SLGSSFLMGFAGWLFWADGGFHAQSNALPLYITHISVSVVWDPLVLVIGAAWLGLVFCLI 146

Query: 130 DCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR 169
              TLFACY +F+RVNPFAKDL KPCLAW AYL+ V  +
Sbjct: 147 HFGTLFACYRSFRRVNPFAKDLAKPCLAWVAYLTLVNYK 184

[Close]

BLAST of CsaV3_3G014620 vs. TrEMBL
Match: tr|A0A061EW61|A0A061EW61_THECC (TSPO(Outer membrane tryptophan-rich sensory protein)-related, putative OS=Theobroma cacao OX=3641 GN=TCM_021206 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.6e-45
Identity = 90/167 (53.89%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 2   PSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIG 61
           P++ PP ++RPE K  +AKRAL SL  ++AIP+SLT+  IF FG   R+    ++P W  
Sbjct: 5   PAAPPPVRARPEDKKARAKRALCSLLTAIAIPLSLTLFVIFKFGSGKRYRAMAHKPFWFP 64

Query: 62  PLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVV 121
           PLWLI L+SIG+S L+ LAAWLVW D GFH  SNALPLY++ +SLS+VW+PL LV+ +V 
Sbjct: 65  PLWLIHLASIGTSILMSLAAWLVWVDRGFHVNSNALPLYVSQISLSIVWDPLELVMGAVG 124

Query: 122 IAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR 169
           + FLFC L   T+ ACY  F++VNPFA+DL+KPCL W+ +L+ V+ +
Sbjct: 125 LGFLFCFLHFGTVIACYWTFRKVNPFARDLVKPCLVWSGFLTIVSYK 171

[Close]

BLAST of CsaV3_3G014620 vs. TrEMBL
Match: tr|I1L102|I1L102_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100790873 PE=4 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 3.1e-44
Identity = 87/156 (55.77%), Postives = 120/156 (76.92%), Query Frame = 0


Query: 13  ESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIG 72
           ++K ++A+RALRSLA+ +A+P +LT+  I LFG   ++    ++P W  PLW I LS +G
Sbjct: 8   DTKKSQARRALRSLAIGIAVPFTLTLTIIILFGSGRKYNQIISKPFWFAPLWFIHLSILG 67

Query: 73  SSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCV 132
           SSF +GLAAWLVWADGGF G ++A+ LYIAH+SLS+VW+PLVLV+ +  +A + C+++ V
Sbjct: 68  SSFFMGLAAWLVWADGGFQGETDAMSLYIAHVSLSIVWHPLVLVMGAYWLALISCLVNFV 127

Query: 133 TLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTVR 169
           TLF CYL F++VNPFAKDL KPCLAW AYL  V+ +
Sbjct: 128 TLFLCYLRFRKVNPFAKDLAKPCLAWAAYLCLVSFK 163

The following BLAST results are available for this feature:

BLAST of CsaV3_3G014620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134488.1	3.4e-87	100.00	PREDICTED: translocator protein homolog [Cucumis sativus] >KGN57105.1 hypothetic...	[more]
XP_016898980.1	5.0e-83	95.78	PREDICTED: translocator protein homolog [Cucumis melo]	[more]
XP_023540366.1	3.0e-75	86.59	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022973726.1	3.9e-75	86.59	translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator pro...	[more]
XP_022945022.1	8.6e-75	86.59	translocator protein homolog [Cucurbita moschata]	[more]

BLAST of CsaV3_3G014620 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47770.1	2.9e-32	43.75	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

BLAST of CsaV3_3G014620 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82245\|TSPO_ARATH	5.2e-31	43.75	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]
sp\|Q9GMC9\|TSPO_SHEEP	2.2e-05	28.68	Translocator protein OS=Ovis aries OX=9940 GN=TSPO PE=1 SV=1	[more]

BLAST of CsaV3_3G014620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L583\|A0A0A0L583_CUCSA	2.2e-87	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=4 SV=1	[more]
tr\|A0A1S4DTF2\|A0A1S4DTF2_CUCME	3.3e-83	95.78	translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=4 SV=1	[more]
tr\|A0A2P5E491\|A0A2P5E491_PARAD	5.6e-46	60.38	TspO/MBR-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008040 P...	[more]
tr\|A0A061EW61\|A0A061EW61_THECC	3.6e-45	53.89	TSPO(Outer membrane tryptophan-rich sensory protein)-related, putative OS=Theobr...	[more]
tr\|I1L102\|I1L102_SOYBN	3.1e-44	55.77	Uncharacterized protein OS=Glycine max OX=3847 GN=100790873 PE=4 SV=2	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR038330	TspO/MBR-related_sf
IPR004307	TspO_MBR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G014620.1	CsaV3_3G014620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 15..168 e-value: 1.7E-31 score: 106.9
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 29..167 e-value: 8.1E-20 score: 71.1
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 13..167
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 26..166 e-value: 2.25064E-23 score: 89.8636
IPR038330	TspO/MBR-related superfamily	GENE3D	G3DSA:1.20.1260.100		coord: 19..168 e-value: 1.7E-21 score: 78.3
None	No IPR available	PANTHER	PTHR10057:SF6	SUBFAMILY NOT NAMED	coord: 13..167

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G014620	CSPI03G14400	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G014620	Cucsa.253100	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G014620	CmaCh06G014990	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G014620	CmaCh17G011010	Cucurbita maxima (Rimu)	cmacucB0433
CsaV3_3G014620	CmoCh17G010760	Cucurbita moschata (Rifu)	cmocucB0428
CsaV3_3G014620	CmoCh06G014950	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G014620	Cp4.1LG08g04900	Cucurbita pepo (Zucchini)	cpecucB1056
CsaV3_3G014620	CsGy3G014540	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G014620	Carg17343	Silver-seed gourd	carcucB0640
CsaV3_3G014620	Cla021740	Watermelon (97103) v1	cucwmB239
CsaV3_3G014620	MELO3C006663	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G014620	MELO3C006663.2	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G014620	Cla97C05G087600	Watermelon (97103) v2	cucwmbB206
CsaV3_3G014620	Bhi01G000717	Wax gourd	cucwgoB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G014620	Wax gourd	cucwgoB262
CsaV3_3G014620	Cucumber (Chinese Long) v3	cuccucB026
CsaV3_3G014620	Silver-seed gourd	carcucB0079
CsaV3_3G014620	Silver-seed gourd	carcucB0741
CsaV3_3G014620	Silver-seed gourd	carcucB0878
CsaV3_3G014620	Cucumber (Gy14) v2	cgybcucB030
CsaV3_3G014620	Cucurbita maxima (Rimu)	cmacucB0008
CsaV3_3G014620	Cucurbita maxima (Rimu)	cmacucB0291
CsaV3_3G014620	Cucurbita maxima (Rimu)	cmacucB0425
CsaV3_3G014620	Cucurbita maxima (Rimu)	cmacucB1049
CsaV3_3G014620	Cucurbita moschata (Rifu)	cmocucB0283
CsaV3_3G014620	Cucurbita moschata (Rifu)	cmocucB0420
CsaV3_3G014620	Cucurbita moschata (Rifu)	cmocucB1032
CsaV3_3G014620	Cucurbita pepo (Zucchini)	cpecucB0154
CsaV3_3G014620	Cucurbita pepo (Zucchini)	cpecucB0379
CsaV3_3G014620	Cucurbita pepo (Zucchini)	cpecucB0759
CsaV3_3G014620	Wild cucumber (PI 183967)	cpicucB033
CsaV3_3G014620	Bottle gourd (USVL1VR-Ls)	cuclsiB163
CsaV3_3G014620	Bottle gourd (USVL1VR-Ls)	cuclsiB218
CsaV3_3G014620	Melon (DHL92) v3.5.1	cucmeB176
CsaV3_3G014620	Melon (DHL92) v3.5.1	cucmeB198
CsaV3_3G014620	Melon (DHL92) v3.6.1	cucmedB167
CsaV3_3G014620	Melon (DHL92) v3.6.1	cucmedB189
CsaV3_3G014620	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G014620	Watermelon (Charleston Gray)	cucwcgB254
CsaV3_3G014620	Watermelon (97103) v1	cucwmB288
CsaV3_3G014620	Watermelon (97103) v2	cucwmbB233