Carg17343 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17343
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	translocator protein homolog
Location	Cucurbita_argyrosperma_scaffold_092 : 116273 .. 116788 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCTCCGCCGTTCAAATCCAGACCGGAATCCAAATACACCAAGGCGAAAAGAGCTCTCCGATCCCTCGCCGTCTCCGTCGCCATTCCTCTCACCCTTACCATCGCCGTCATCTTCCTCTTCGGCCGCTCCTCCCGCCATTTCCCCAACCGCAACCGTCCGATTTGGGTGGCGCCGCTCTGGCTCCTCCATCTCTCGTCGATCAGCTCCTCTTTCCTAATCGGCCTCGCCGCCTGGCTCGTTTGGGCCGATGGTGGCTTCCATTGCGGATCCAACGCTCTTCCGCTCTACATCGCGCATCTCTCGCTCAGTGTCGTTTGGAATCCTCTGGTGCTCGTGATTCGCGCTCGTCTGCTTGCGTTTCTGTTCTGTGTTTTGGATTTAGTTACTCTGTATGCTTGTTATCGGACCTTCAAGCGAGTGAATCCCTTCGCTAAGGATCTGATTAAGCCTTGTTTGGCTTGGACTGCGTATCTCTGTGCTGTTACTTATGTGTTTATTGATCTTTGA

mRNA sequence

ATGTCTTCCTCTCCGCCGTTCAAATCCAGACCGGAATCCAAATACACCAAGGCGAAAAGAGCTCTCCGATCCCTCGCCGTCTCCGTCGCCATTCCTCTCACCCTTACCATCGCCGTCATCTTCCTCTTCGGCCGCTCCTCCCGCCATTTCCCCAACCGCAACCGTCCGATTTGGGTGGCGCCGCTCTGGCTCCTCCATCTCTCGTCGATCAGCTCCTCTTTCCTAATCGGCCTCGCCGCCTGGCTCGTTTGGGCCGATGGTGGCTTCCATTGCGGATCCAACGCTCTTCCGCTCTACATCGCGCATCTCTCGCTCAGTGTCGTTTGGAATCCTCTGGTGCTCGTGATTCGCGCTCGTCTGCTTGCGTTTCTGTTCTGTGTTTTGGATTTAGTTACTCTGTATGCTTGTTATCGGACCTTCAAGCGAGTGAATCCCTTCGCTAAGGATCTGATTAAGCCTTGTTTGGCTTGGACTGCGTATCTCTGTGCTGTTACTTATGTGTTTATTGATCTTTGA

Coding sequence (CDS)

ATGTCTTCCTCTCCGCCGTTCAAATCCAGACCGGAATCCAAATACACCAAGGCGAAAAGAGCTCTCCGATCCCTCGCCGTCTCCGTCGCCATTCCTCTCACCCTTACCATCGCCGTCATCTTCCTCTTCGGCCGCTCCTCCCGCCATTTCCCCAACCGCAACCGTCCGATTTGGGTGGCGCCGCTCTGGCTCCTCCATCTCTCGTCGATCAGCTCCTCTTTCCTAATCGGCCTCGCCGCCTGGCTCGTTTGGGCCGATGGTGGCTTCCATTGCGGATCCAACGCTCTTCCGCTCTACATCGCGCATCTCTCGCTCAGTGTCGTTTGGAATCCTCTGGTGCTCGTGATTCGCGCTCGTCTGCTTGCGTTTCTGTTCTGTGTTTTGGATTTAGTTACTCTGTATGCTTGTTATCGGACCTTCAAGCGAGTGAATCCCTTCGCTAAGGATCTGATTAAGCCTTGTTTGGCTTGGACTGCGTATCTCTGTGCTGTTACTTATGTGTTTATTGATCTTTGA

Protein sequence

MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLLAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL

Homology

[Close]

BLAST of Carg17343 vs. NCBI nr
Match: XP_022945022.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 340.9 bits (873), Expect = 2.5e-90
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVA 60
           MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVA
Sbjct: 56  MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVA 115

Query: 61  PLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARL 120
           PLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARL
Sbjct: 116 PLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARL 175

Query: 121 LAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 172
           LAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL
Sbjct: 176 LAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 226

[Close]

BLAST of Carg17343 vs. NCBI nr
Match: XP_023540366.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338.2 bits (866), Expect = 1.6e-89
Identity = 170/171 (99.42%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVA 60
           MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVA
Sbjct: 56  MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVA 115

Query: 61  PLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARL 120
           PLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRA L
Sbjct: 116 PLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALL 175

Query: 121 LAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 172
           LAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL
Sbjct: 176 LAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 226

[Close]

BLAST of Carg17343 vs. NCBI nr
Match: XP_022973726.1 (translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 336.7 bits (862), Expect = 4.8e-89
Identity = 169/171 (98.83%), Postives = 169/171 (98.83%), Query Frame = 0


Query: 1   MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVA 60
           MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVA
Sbjct: 1   MSSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVA 60

Query: 61  PLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARL 120
           PLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRA L
Sbjct: 61  PLWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALL 120

Query: 121 LAFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 172
           LAFLFCVLD VTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL
Sbjct: 121 LAFLFCVLDFVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 171

[Close]

BLAST of Carg17343 vs. NCBI nr
Match: XP_016898980.1 (PREDICTED: translocator protein homolog [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 2.9e-78
Identity = 149/170 (87.65%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 2   SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 61
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIAVIFLFGRSSRHFPNRNRPIW+ P
Sbjct: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWIGP 62

Query: 62  LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLL 121
           LWLL LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVW+PLVLVIR+ ++
Sbjct: 63  LWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSVVI 122

Query: 122 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 172
           AFLFCVLD VTL+ACYR F+RVNPFAKDL+KPCLAWTAYL AVTYVFI L
Sbjct: 123 AFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVTYVFIHL 172

[Close]

BLAST of Carg17343 vs. NCBI nr
Match: XP_004134488.1 (PREDICTED: translocator protein homolog [Cucumis sativus] >KGN57105.1 hypothetical protein Csa_3G154290 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 3.8e-78
Identity = 148/170 (87.06%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 2   SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 61
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62

Query: 62  LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLL 121
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR+ ++
Sbjct: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122

Query: 122 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 172
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVTYVFIDL
Sbjct: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

[Close]

BLAST of Carg17343 vs. TAIR10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related)

HSP 1 Score: 131.7 bits (330), Expect = 4.2e-31
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 0


Query: 8   KSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHL 67
           K + + K   AKR L+SL V+VA P+ +T+   +  G S  +        W+ PLWLLH 
Sbjct: 33  KGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHT 92

Query: 68  SSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLLAFLFCV 127
           + ++SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + + +      +
Sbjct: 93  TCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWL 152

Query: 128 LDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAV 165
                L+ CY+ F  ++P A +L+KPCLAW A++ AV
Sbjct: 153 GQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

[Close]

BLAST of Carg17343 vs. Swiss-Prot
Match: sp|O82245|TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 7.6e-30
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 0


Query: 8   KSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHL 67
           K + + K   AKR L+SL V+VA P+ +T+   +  G S  +        W+ PLWLLH 
Sbjct: 33  KGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHT 92

Query: 68  SSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLLAFLFCV 127
           + ++SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + + +      +
Sbjct: 93  TCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWL 152

Query: 128 LDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAV 165
                L+ CY+ F  ++P A +L+KPCLAW A++ AV
Sbjct: 153 GQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

[Close]

BLAST of Carg17343 vs. TrEMBL
Match: tr|A0A1S4DTF2|A0A1S4DTF2_CUCME (translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.9e-78
Identity = 149/170 (87.65%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 2   SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 61
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIAVIFLFGRSSRHFPNRNRPIW+ P
Sbjct: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWIGP 62

Query: 62  LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLL 121
           LWLL LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVW+PLVLVIR+ ++
Sbjct: 63  LWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSVVI 122

Query: 122 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 172
           AFLFCVLD VTL+ACYR F+RVNPFAKDL+KPCLAWTAYL AVTYVFI L
Sbjct: 123 AFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVTYVFIHL 172

[Close]

BLAST of Carg17343 vs. TrEMBL
Match: tr|A0A0A0L583|A0A0A0L583_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 2.5e-78
Identity = 148/170 (87.06%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 2   SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 61
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62

Query: 62  LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLL 121
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR+ ++
Sbjct: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122

Query: 122 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 172
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVTYVFIDL
Sbjct: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

[Close]

BLAST of Carg17343 vs. TrEMBL
Match: tr|A0A2P5E491|A0A2P5E491_PARAD (TspO/MBR-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008040 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.0e-48
Identity = 99/163 (60.74%), Postives = 122/163 (74.85%), Query Frame = 0


Query: 9   SRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHLS 68
           S+ E K  +AKRALRSL ++V+IPL+LT+ +I LFG S   +    +P W  PLWL+HL+
Sbjct: 27  SKREKKIFRAKRALRSLFIAVSIPLSLTMTIILLFG-SGHRYRAVPKPFWFPPLWLIHLA 86

Query: 69  SISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLLAFLFCVL 128
           S+ SSFL+G A WL WADGGFH  SNALPLYI H+S+SVVW+PLVLVI A  L  +FC++
Sbjct: 87  SLGSSFLMGFAGWLFWADGGFHAQSNALPLYITHISVSVVWDPLVLVIGAAWLGLVFCLI 146

Query: 129 DLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 172
              TL+ACYR+F+RVNPFAKDL KPCLAW AYL  V Y  I L
Sbjct: 147 HFGTLFACYRSFRRVNPFAKDLAKPCLAWVAYLTLVNYKLIYL 188

[Close]

BLAST of Carg17343 vs. TrEMBL
Match: tr|A0A061EW61|A0A061EW61_THECC (TSPO(Outer membrane tryptophan-rich sensory protein)-related, putative OS=Theobroma cacao OX=3641 GN=TCM_021206 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.3e-46
Identity = 93/170 (54.71%), Postives = 124/170 (72.94%), Query Frame = 0


Query: 2   SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 61
           ++ PP ++RPE K  +AKRAL SL  ++AIPL+LT+ VIF FG   R+    ++P W  P
Sbjct: 6   AAPPPVRARPEDKKARAKRALCSLLTAIAIPLSLTLFVIFKFGSGKRYRAMAHKPFWFPP 65

Query: 62  LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLL 121
           LWL+HL+SI +S L+ LAAWLVW D GFH  SNALPLY++ +SLS+VW+PL LV+ A  L
Sbjct: 66  LWLIHLASIGTSILMSLAAWLVWVDRGFHVNSNALPLYVSQISLSIVWDPLELVMGAVGL 125

Query: 122 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 172
            FLFC L   T+ ACY TF++VNPFA+DL+KPCL W+ +L  V+Y  + L
Sbjct: 126 GFLFCFLHFGTVIACYWTFRKVNPFARDLVKPCLVWSGFLTIVSYKLLTL 175

[Close]

BLAST of Carg17343 vs. TrEMBL
Match: tr|I1L102|I1L102_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100790873 PE=4 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 89/158 (56.33%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 12  ESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAPLWLLHLSSIS 71
           ++K ++A+RALRSLA+ +A+P TLT+ +I LFG   ++    ++P W APLW +HLS + 
Sbjct: 8   DTKKSQARRALRSLAIGIAVPFTLTLTIIILFGSGRKYNQIISKPFWFAPLWFIHLSILG 67

Query: 72  SSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLLAFLFCVLDLV 131
           SSF +GLAAWLVWADGGF   ++A+ LYIAH+SLS+VW+PLVLV+ A  LA + C+++ V
Sbjct: 68  SSFFMGLAAWLVWADGGFQGETDAMSLYIAHVSLSIVWHPLVLVMGAYWLALISCLVNFV 127

Query: 132 TLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFI 170
           TL+ CY  F++VNPFAKDL KPCLAW AYLC V++  I
Sbjct: 128 TLFLCYLRFRKVNPFAKDLAKPCLAWAAYLCLVSFKLI 165

The following BLAST results are available for this feature:

BLAST of Carg17343 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945022.1	2.5e-90	100.00	translocator protein homolog [Cucurbita moschata]	[more]
XP_023540366.1	1.6e-89	99.42	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022973726.1	4.8e-89	98.83	translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator pro...	[more]
XP_016898980.1	2.9e-78	87.65	PREDICTED: translocator protein homolog [Cucumis melo]	[more]
XP_004134488.1	3.8e-78	87.06	PREDICTED: translocator protein homolog [Cucumis sativus] >KGN57105.1 hypothetic...	[more]

BLAST of Carg17343 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47770.1	4.2e-31	40.76	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

BLAST of Carg17343 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82245\|TSPO_ARATH	7.6e-30	40.76	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]

BLAST of Carg17343 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DTF2\|A0A1S4DTF2_CUCME	1.9e-78	87.65	translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=4 SV=1	[more]
tr\|A0A0A0L583\|A0A0A0L583_CUCSA	2.5e-78	87.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=4 SV=1	[more]
tr\|A0A2P5E491\|A0A2P5E491_PARAD	6.0e-48	60.74	TspO/MBR-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008040 P...	[more]
tr\|A0A061EW61\|A0A061EW61_THECC	3.3e-46	54.71	TSPO(Outer membrane tryptophan-rich sensory protein)-related, putative OS=Theobr...	[more]
tr\|I1L102\|I1L102_SOYBN	1.3e-45	56.33	Uncharacterized protein OS=Glycine max OX=3847 GN=100790873 PE=4 SV=2	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR038330	TspO/MBR-related_sf
IPR004307	TspO_MBR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17343-RA	Carg17343-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 28..167 e-value: 6.0E-19 score: 68.3
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 14..171 e-value: 2.1E-28 score: 96.8
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 12..169
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 76..169 e-value: 4.85645E-18 score: 75.6112
IPR038330	TspO/MBR-related superfamily	GENE3D	G3DSA:1.20.1260.100		coord: 19..170 e-value: 6.7E-20 score: 73.1
None	No IPR available	PANTHER	PTHR10057:SF6	SUBFAMILY NOT NAMED	coord: 12..169

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17343	Cla021740	Watermelon (97103) v1	carwmB0603
Carg17343	Csa3G154290	Cucumber (Chinese Long) v2	carcuB0633
Carg17343	MELO3C006663	Melon (DHL92) v3.5.1	carmeB0610
Carg17343	CSPI03G14400	Wild cucumber (PI 183967)	carcpiB0639
Carg17343	Cucsa.253100	Cucumber (Gy14) v1	carcgyB0681
Carg17343	CmaCh06G014990	Cucurbita maxima (Rimu)	carcmaB0849
Carg17343	CmoCh06G014950	Cucurbita moschata (Rifu)	carcmoB0825
Carg17343	Lsi05G015390	Bottle gourd (USVL1VR-Ls)	carlsiB552
Carg17343	Cp4.1LG08g04900	Cucurbita pepo (Zucchini)	carcpeB0861
Carg17343	CsGy3G014540	Cucumber (Gy14) v2	carcgybB0605
Carg17343	MELO3C006663.2	Melon (DHL92) v3.6.1	carmedB0616
Carg17343	CsaV3_3G014620	Cucumber (Chinese Long) v3	carcucB0640
Carg17343	Cla97C05G087600	Watermelon (97103) v2	carwmbB0631
Carg17343	Bhi01G000717	Wax gourd	carwgoB0722

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17343	Bottle gourd (USVL1VR-Ls)	carlsiB550
Carg17343	Melon (DHL92) v3.5.1	carmeB0609
Carg17343	Melon (DHL92) v3.6.1	carmedB0615
Carg17343	Watermelon (Charleston Gray)	carwcgB0588
Carg17343	Watermelon (Charleston Gray)	carwcgB0589
Carg17343	Watermelon (97103) v1	carwmB0604
Carg17343	Watermelon (97103) v2	carwmbB0632
Carg17343	Wax gourd	carwgoB0720
Carg17343	Silver-seed gourd	carcarB083
Carg17343	Silver-seed gourd	carcarB543
Carg17343	Silver-seed gourd	carcarB544
Carg17343	Cucurbita maxima (Rimu)	carcmaB0846
Carg17343	Cucurbita maxima (Rimu)	carcmaB0847
Carg17343	Cucurbita maxima (Rimu)	carcmaB0848
Carg17343	Cucurbita maxima (Rimu)	carcmaB0850
Carg17343	Cucurbita moschata (Rifu)	carcmoB0823
Carg17343	Cucurbita moschata (Rifu)	carcmoB0824
Carg17343	Cucurbita moschata (Rifu)	carcmoB0826
Carg17343	Cucurbita pepo (Zucchini)	carcpeB0857
Carg17343	Cucurbita pepo (Zucchini)	carcpeB0859
Carg17343	Cucurbita pepo (Zucchini)	carcpeB0860