CsGy3G014540 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G014540
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	translocator protein homolog
Location	Chr3 : 10738643 .. 10739161 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCTTCCAATCCTCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGCGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACTCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGA

mRNA sequence

ATGCCTTCTTCCAATCCTCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGCGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACTCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGA

Coding sequence (CDS)

ATGCCTTCTTCCAATCCTCCGTTCAAATCCCGACCAGAATCCAAATACACCAAGGCCAAGAGAGCTCTCCGTTCTCTCGCCGTCTCCGTCGCCATTCCTGTTTCCCTCACAATCGCCGCCATCTTCCTCTTTGGCCGCTCCTCTCGCCATTACCCCAACCGTAACCGCCCGATTTGGATAGGCCCACTCTGGCTCATCCAGCTTTCCTCCATTGGCTCCTCCTTTCTGGTTGGCCTCGCAGCTTGGCTCGTTTGGGCGGACGGCGGTTTCCATGGCGGTTCCAATGCTCTTCCGCTCTACATCGCGCACCTTTCTCTCAGCGTCGTTTGGAATCCTCTGGTGCTTGTGATTCGGTCTGTGGTGATTGCGTTTTTGTTCTGTGTTTTGGATTGTGTGACTCTGTTTGCGTGTTATCTGGCGTTCAAGCGAGTTAATCCTTTCGCTAAGGATCTGATGAAGCCTTGTTTGGCTTGGACTGCGTATCTCTCTGCTGTTACGTATGTGTTCATTGATCTTTGA

Protein sequence

MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL

Homology

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BLAST of CsGy3G014540 vs. NCBI nr
Match: XP_004134488.1 (PREDICTED: translocator protein homolog [Cucumis sativus] >KGN57105.1 hypothetical protein Csa_3G154290 [Cucumis sativus])

HSP 1 Score: 341.3 bits (874), Expect = 1.9e-90
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 173
           VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

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BLAST of CsGy3G014540 vs. NCBI nr
Match: XP_016898980.1 (PREDICTED: translocator protein homolog [Cucumis melo])

HSP 1 Score: 324.7 bits (831), Expect = 1.9e-85
Identity = 164/172 (95.35%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 173
           VIAFLFCVLD VTLFACY AF+RVNPFAKDLMKPCLAWTAYLSAVTYVFI L
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVTYVFIHL 172

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BLAST of CsGy3G014540 vs. NCBI nr
Match: XP_023540366.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 1.7e-78
Identity = 148/170 (87.06%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 57  SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 116

Query: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR++++
Sbjct: 117 LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLL 176

Query: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 173
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVTYVFIDL
Sbjct: 177 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 226

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BLAST of CsGy3G014540 vs. NCBI nr
Match: XP_022973726.1 (translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 301.2 bits (770), Expect = 2.2e-78
Identity = 148/170 (87.06%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 2   SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 61

Query: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR++++
Sbjct: 62  LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRALLL 121

Query: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 173
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVTYVFIDL
Sbjct: 122 AFLFCVLDFVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 171

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BLAST of CsGy3G014540 vs. NCBI nr
Match: XP_022945022.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 300.1 bits (767), Expect = 5.0e-78
Identity = 148/170 (87.06%), Postives = 160/170 (94.12%), Query Frame = 0


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGP 62
           SS+PPFKSRPESKYTKAKRALRSLAVSVAIP++LTIA IFLFGRSSRH+PNRNRPIW+ P
Sbjct: 57  SSSPPFKSRPESKYTKAKRALRSLAVSVAIPLTLTIAVIFLFGRSSRHFPNRNRPIWVAP 116

Query: 63  LWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVI 122
           LWL+ LSSI SSFL+GLAAWLVWADGGFH GSNALPLYIAHLSLSVVWNPLVLVIR+ ++
Sbjct: 117 LWLLHLSSISSSFLIGLAAWLVWADGGFHCGSNALPLYIAHLSLSVVWNPLVLVIRARLL 176

Query: 123 AFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 173
           AFLFCVLD VTL+ACY  FKRVNPFAKDL+KPCLAWTAYL AVTYVFIDL
Sbjct: 177 AFLFCVLDLVTLYACYRTFKRVNPFAKDLIKPCLAWTAYLCAVTYVFIDL 226

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BLAST of CsGy3G014540 vs. TAIR10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related)

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-31
Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = 0


Query: 9   KSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQL 68
           K + + K   AKR L+SL V+VA PV +T+ A +  G S  +        WI PLWL+  
Sbjct: 33  KGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHT 92

Query: 69  SSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCV 128
           + + SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + S V      +
Sbjct: 93  TCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWL 152

Query: 129 LDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAV 166
                LF CY AF  ++P A +L+KPCLAW A+++AV
Sbjct: 153 GQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

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BLAST of CsGy3G014540 vs. Swiss-Prot
Match: sp|O82245|TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.5e-30
Identity = 69/157 (43.95%), Postives = 94/157 (59.87%), Query Frame = 0


Query: 9   KSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQL 68
           K + + K   AKR L+SL V+VA PV +T+ A +  G S  +        WI PLWL+  
Sbjct: 33  KGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHT 92

Query: 69  SSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCV 128
           + + SS L+GLAAWLVW DGGFH   NAL LY+A   L +VW+P+   + S V      +
Sbjct: 93  TCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWL 152

Query: 129 LDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAV 166
                LF CY AF  ++P A +L+KPCLAW A+++AV
Sbjct: 153 GQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

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BLAST of CsGy3G014540 vs. Swiss-Prot
Match: sp|Q9GMC9|TSPO_SHEEP (Translocator protein OS=Ovis aries OX=9940 GN=TSPO PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.7e-05
Identity = 37/128 (28.91%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 42  FLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWAD-GGFHGGSNA-LPL 101
           ++ G   R Y +  +P W  P W++          +G  ++L+W + GGF   +   L L
Sbjct: 25  YIRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYLIWKELGGFSKEAVVPLGL 84

Query: 102 YIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWT 161
           Y   L+L+  W PL    R +  AF+  +L      A  +A+++V+P A  L+ P LAW 
Sbjct: 85  YAGQLALNWAWPPLFFGARQMGWAFVDLLLTGGMAAATAMAWRQVSPPAACLLYPYLAWL 144

Query: 162 AYLSAVTY 168
           A+ + + Y
Sbjct: 145 AFAAMLNY 152

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BLAST of CsGy3G014540 vs. Swiss-Prot
Match: sp|P50637|TSPO_MOUSE (Translocator protein OS=Mus musculus OX=10090 GN=Tspo PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-05
Identity = 39/132 (29.55%), Postives = 60/132 (45.45%), Query Frame = 0


Query: 38  IAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWAD-GGF-HGGSN 97
           + A F+ G   R Y +  +P W  P W +          +G  +++VW + GGF      
Sbjct: 21  MGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTEDAMV 80

Query: 98  ALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPC 157
            L LY   L+L+  W P+    R +  A    +L      A  LA+ RV+P A  L+ P 
Sbjct: 81  PLGLYTGQLALNWAWPPIFFGARQMGWALADLLLVSGVATATTLAWHRVSPPAARLLYPY 140

Query: 158 LAWTAYLSAVTY 168
           LAW A+ + + Y
Sbjct: 141 LAWLAFATVLNY 152

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BLAST of CsGy3G014540 vs. Swiss-Prot
Match: sp|P16257|TSPO_RAT (Translocator protein OS=Rattus norvegicus OX=10116 GN=Tspo PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.9e-05
Identity = 38/132 (28.79%), Postives = 61/132 (46.21%), Query Frame = 0


Query: 38  IAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWAD-GGF-HGGSN 97
           + A F+ G   R Y +  +P W  P W +          +G  ++++W + GGF      
Sbjct: 21  MGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIIWKELGGFTEEAMV 80

Query: 98  ALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPC 157
            L LY   L+L+  W P+    R +  A +  +L      A  LA+ RV+P A  L+ P 
Sbjct: 81  PLGLYTGQLALNWAWPPIFFGARQMGWALVDLMLVSGVATATTLAWHRVSPPAARLLYPY 140

Query: 158 LAWTAYLSAVTY 168
           LAW A+ + + Y
Sbjct: 141 LAWLAFATMLNY 152

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BLAST of CsGy3G014540 vs. Swiss-Prot
Match: sp|Q6UN27|TSPO_PIG (Translocator protein OS=Sus scrofa OX=9823 GN=TSPO PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-04
Identity = 35/127 (27.56%), Postives = 58/127 (45.67%), Query Frame = 0


Query: 43  LFGRSSRHYPNRNRPIWIGPLWLIQLSSIGSSFLVGLAAWLVWAD-GGFHGGSNA-LPLY 102
           + G+    Y    +P W  P W +          +G  ++++W + GGF   +   L LY
Sbjct: 26  VLGKGLHWYAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIWKELGGFSEEAVVPLGLY 85

Query: 103 IAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTA 162
              L+L+  W PL    R +  A +  VL      A  +A+ +V+P A  L+ P LAW A
Sbjct: 86  AGQLALNWAWPPLFFGARQMGWALVDLVLTGGVAAATAVAWYQVSPLAARLLYPYLAWLA 145

Query: 163 YLSAVTY 168
           + + + Y
Sbjct: 146 FAATLNY 152

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BLAST of CsGy3G014540 vs. TrEMBL
Match: tr|A0A0A0L583|A0A0A0L583_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.3e-90
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 173
           VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL
Sbjct: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 172

[Close]

BLAST of CsGy3G014540 vs. TrEMBL
Match: tr|A0A1S4DTF2|A0A1S4DTF2_CUCME (translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.2e-85
Identity = 164/172 (95.35%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60
           MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIA IFLFGRSSRH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAVIFLFGRSSRHFPNRNRPIWI 60

Query: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSV 120
           GPLWL+QLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW+PLVLVIRSV
Sbjct: 61  GPLWLLQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWSPLVLVIRSV 120

Query: 121 VIAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 173
           VIAFLFCVLD VTLFACY AF+RVNPFAKDLMKPCLAWTAYLSAVTYVFI L
Sbjct: 121 VIAFLFCVLDFVTLFACYRAFERVNPFAKDLMKPCLAWTAYLSAVTYVFIHL 172

[Close]

BLAST of CsGy3G014540 vs. TrEMBL
Match: tr|A0A2P5E491|A0A2P5E491_PARAD (TspO/MBR-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008040 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.1e-46
Identity = 99/163 (60.74%), Postives = 121/163 (74.23%), Query Frame = 0


Query: 10  SRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLS 69
           S+ E K  +AKRALRSL ++V+IP+SLT+  I LFG S   Y    +P W  PLWLI L+
Sbjct: 27  SKREKKIFRAKRALRSLFIAVSIPLSLTMTIILLFG-SGHRYRAVPKPFWFPPLWLIHLA 86

Query: 70  SIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVL 129
           S+GSSFL+G A WL WADGGFH  SNALPLYI H+S+SVVW+PLVLVI +  +  +FC++
Sbjct: 87  SLGSSFLMGFAGWLFWADGGFHAQSNALPLYITHISVSVVWDPLVLVIGAAWLGLVFCLI 146

Query: 130 DCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 173
              TLFACY +F+RVNPFAKDL KPCLAW AYL+ V Y  I L
Sbjct: 147 HFGTLFACYRSFRRVNPFAKDLAKPCLAWVAYLTLVNYKLIYL 188

[Close]

BLAST of CsGy3G014540 vs. TrEMBL
Match: tr|A0A061EW61|A0A061EW61_THECC (TSPO(Outer membrane tryptophan-rich sensory protein)-related, putative OS=Theobroma cacao OX=3641 GN=TCM_021206 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.4e-46
Identity = 92/171 (53.80%), Postives = 125/171 (73.10%), Query Frame = 0


Query: 2   PSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIG 61
           P++ PP ++RPE K  +AKRAL SL  ++AIP+SLT+  IF FG   R+    ++P W  
Sbjct: 5   PAAPPPVRARPEDKKARAKRALCSLLTAIAIPLSLTLFVIFKFGSGKRYRAMAHKPFWFP 64

Query: 62  PLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVV 121
           PLWLI L+SIG+S L+ LAAWLVW D GFH  SNALPLY++ +SLS+VW+PL LV+ +V 
Sbjct: 65  PLWLIHLASIGTSILMSLAAWLVWVDRGFHVNSNALPLYVSQISLSIVWDPLELVMGAVG 124

Query: 122 IAFLFCVLDCVTLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFIDL 173
           + FLFC L   T+ ACY  F++VNPFA+DL+KPCL W+ +L+ V+Y  + L
Sbjct: 125 LGFLFCFLHFGTVIACYWTFRKVNPFARDLVKPCLVWSGFLTIVSYKLLTL 175

[Close]

BLAST of CsGy3G014540 vs. TrEMBL
Match: tr|I1L102|I1L102_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100790873 PE=4 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 3.1e-44
Identity = 88/158 (55.70%), Postives = 121/158 (76.58%), Query Frame = 0


Query: 13  ESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWIGPLWLIQLSSIG 72
           ++K ++A+RALRSLA+ +A+P +LT+  I LFG   ++    ++P W  PLW I LS +G
Sbjct: 8   DTKKSQARRALRSLAIGIAVPFTLTLTIIILFGSGRKYNQIISKPFWFAPLWFIHLSILG 67

Query: 73  SSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVWNPLVLVIRSVVIAFLFCVLDCV 132
           SSF +GLAAWLVWADGGF G ++A+ LYIAH+SLS+VW+PLVLV+ +  +A + C+++ V
Sbjct: 68  SSFFMGLAAWLVWADGGFQGETDAMSLYIAHVSLSIVWHPLVLVMGAYWLALISCLVNFV 127

Query: 133 TLFACYLAFKRVNPFAKDLMKPCLAWTAYLSAVTYVFI 171
           TLF CYL F++VNPFAKDL KPCLAW AYL  V++  I
Sbjct: 128 TLFLCYLRFRKVNPFAKDLAKPCLAWAAYLCLVSFKLI 165

The following BLAST results are available for this feature:

BLAST of CsGy3G014540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134488.1	1.9e-90	100.00	PREDICTED: translocator protein homolog [Cucumis sativus] >KGN57105.1 hypothetic...	[more]
XP_016898980.1	1.9e-85	95.35	PREDICTED: translocator protein homolog [Cucumis melo]	[more]
XP_023540366.1	1.7e-78	87.06	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022973726.1	2.2e-78	87.06	translocator protein homolog [Cucurbita maxima] >XP_022975172.1 translocator pro...	[more]
XP_022945022.1	5.0e-78	87.06	translocator protein homolog [Cucurbita moschata]	[more]

BLAST of CsGy3G014540 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47770.1	2.5e-31	43.95	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

BLAST of CsGy3G014540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82245\|TSPO_ARATH	4.5e-30	43.95	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]
sp\|Q9GMC9\|TSPO_SHEEP	1.7e-05	28.91	Translocator protein OS=Ovis aries OX=9940 GN=TSPO PE=1 SV=1	[more]
sp\|P50637\|TSPO_MOUSE	2.2e-05	29.55	Translocator protein OS=Mus musculus OX=10090 GN=Tspo PE=1 SV=1	[more]
sp\|P16257\|TSPO_RAT	2.9e-05	28.79	Translocator protein OS=Rattus norvegicus OX=10116 GN=Tspo PE=1 SV=1	[more]
sp\|Q6UN27\|TSPO_PIG	3.2e-04	27.56	Translocator protein OS=Sus scrofa OX=9823 GN=TSPO PE=2 SV=1	[more]

BLAST of CsGy3G014540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L583\|A0A0A0L583_CUCSA	1.3e-90	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G154290 PE=4 SV=1	[more]
tr\|A0A1S4DTF2\|A0A1S4DTF2_CUCME	1.2e-85	95.35	translocator protein homolog OS=Cucumis melo OX=3656 GN=LOC107990392 PE=4 SV=1	[more]
tr\|A0A2P5E491\|A0A2P5E491_PARAD	1.1e-46	60.74	TspO/MBR-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_008040 P...	[more]
tr\|A0A061EW61\|A0A061EW61_THECC	7.4e-46	53.80	TSPO(Outer membrane tryptophan-rich sensory protein)-related, putative OS=Theobr...	[more]
tr\|I1L102\|I1L102_SOYBN	3.1e-44	55.70	Uncharacterized protein OS=Glycine max OX=3847 GN=100790873 PE=4 SV=2	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR038330	TspO/MBR-related_sf
IPR004307	TspO_MBR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G014540.1	CsGy3G014540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 29..168 e-value: 1.5E-19 score: 70.3
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 15..172 e-value: 1.7E-31 score: 106.8
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 13..170
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 26..170 e-value: 1.15344E-23 score: 90.634
IPR038330	TspO/MBR-related superfamily	GENE3D	G3DSA:1.20.1260.100		coord: 19..171 e-value: 6.8E-22 score: 79.6
None	No IPR available	PANTHER	PTHR10057:SF6	SUBFAMILY NOT NAMED	coord: 13..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G014540	Cla021740	Watermelon (97103) v1	cgybwmB217
CsGy3G014540	Csa3G154290	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G014540	MELO3C006663	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G014540	CSPI03G14400	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G014540	CmaCh17G011010	Cucurbita maxima (Rimu)	cgybcmaB351
CsGy3G014540	CmaCh06G014990	Cucurbita maxima (Rimu)	cgybcmaB427
CsGy3G014540	CmoCh17G010760	Cucurbita moschata (Rifu)	cgybcmoB323
CsGy3G014540	CmoCh06G014950	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G014540	Cp4.1LG08g04900	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G014540	Cp4.1LG12g05440	Cucurbita pepo (Zucchini)	cgybcpeB309
CsGy3G014540	MELO3C006663.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G014540	CsaV3_3G014620	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G014540	Cla97C05G087600	Watermelon (97103) v2	cgybwmbB196
CsGy3G014540	Bhi01G000717	Wax gourd	cgybwgoB257
CsGy3G014540	Carg17343	Silver-seed gourd	carcgybB0605

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G014540	Silver-seed gourd	carcgybB0072
CsGy3G014540	Silver-seed gourd	carcgybB0700
CsGy3G014540	Silver-seed gourd	carcgybB0828
CsGy3G014540	Cucumber (Chinese Long) v3	cgybcucB107
CsGy3G014540	Watermelon (97103) v2	cgybwmbB222
CsGy3G014540	Wax gourd	cgybwgoB248
CsGy3G014540	Cucumber (Gy14) v2	cgybcgybB021
CsGy3G014540	Cucurbita maxima (Rimu)	cgybcmaB282
CsGy3G014540	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G014540	Cucurbita maxima (Rimu)	cgybcmaB345
CsGy3G014540	Cucurbita maxima (Rimu)	cgybcmaB454
CsGy3G014540	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G014540	Cucurbita moschata (Rifu)	cgybcmoB317
CsGy3G014540	Cucurbita moschata (Rifu)	cgybcmoB421
CsGy3G014540	Cucurbita pepo (Zucchini)	cgybcpeB303
CsGy3G014540	Cucurbita pepo (Zucchini)	cgybcpeB348
CsGy3G014540	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G014540	Bottle gourd (USVL1VR-Ls)	cgyblsiB136
CsGy3G014540	Bottle gourd (USVL1VR-Ls)	cgyblsiB184
CsGy3G014540	Melon (DHL92) v3.5.1	cgybmeB149
CsGy3G014540	Melon (DHL92) v3.6.1	cgybmedB148
CsGy3G014540	Melon (DHL92) v3.6.1	cgybmedB165
CsGy3G014540	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G014540	Watermelon (Charleston Gray)	cgybwcgB230
CsGy3G014540	Watermelon (97103) v1	cgybwmB262