Cla021740 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021740
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	mRNA clone RTFL01-12-A24 (AHRD V1 ***- E4MWM7_THEHA)
Location	Chr5 : 5807948 .. 5808286 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTTCCAATCCGCCATTCAAATCCAGACCAGAATCCAAATACACCAAGGCCAAGAGAGCGCTCCGATCACTCGCCGTCTCCGTCGCCATTCCCCTCTTCCTAACAATCGCCGTCATCTTCCTCTTCGGTCGCTCCGCTCGCCATTTCCCCAATCGGAACCGTCCCATTTGGATACCACCGCTCTGGTTTCTCCATCTCTCCTCCATTGGCTCCTCCTTTCTAATCGGCCTCGCCGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCACGGCGGGGGCAACGCTACATCGCGCATCTTTCTCTTAGCGTCGTTTGGAATCCTCTGGTGCTCGTGA

mRNA sequence

ATGTCTTCTTCCAATCCGCCATTCAAATCCAGACCAGAATCCAAATACACCAAGGCCAAGAGAGCGCTCCGATCACTCGCCGTCTCCGTCGCCATTCCCCTCTTCCTAACAATCGCCGTCATCTTCCTCTTCGGTCGCTCCGCTCGCCATTTCCCCAATCGGAACCGTCCCATTTGGATACCACCGCTCTGGTTTCTCCATCTCTCCTCCATTGGCTCCTCCTTTCTAATCGGCCTCGCCGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCACGGCGGGGGCAACGCTACATCGCGCATCTTTCTCTTAGCGTCGTTTGGAATCCTCTGGTGCTCGTGA

Coding sequence (CDS)

ATGTCTTCTTCCAATCCGCCATTCAAATCCAGACCAGAATCCAAATACACCAAGGCCAAGAGAGCGCTCCGATCACTCGCCGTCTCCGTCGCCATTCCCCTCTTCCTAACAATCGCCGTCATCTTCCTCTTCGGTCGCTCCGCTCGCCATTTCCCCAATCGGAACCGTCCCATTTGGATACCACCGCTCTGGTTTCTCCATCTCTCCTCCATTGGCTCCTCCTTTCTAATCGGCCTCGCCGCTTGGCTCGTTTGGGCGGACGGTGGTTTCCACGGCGGGGGCAACGCTACATCGCGCATCTTTCTCTTAGCGTCGTTTGGAATCCTCTGGTGCTCGTGA

Protein sequence

MSSSNPPFKSRPESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPPLWFLHLSSIGSSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILWCS

Homology

[Close]

BLAST of Cla021740 vs. Swiss-Prot
Match: TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 1


Query: 9   KSRPESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPPLWFLHL 68
           K + + K   AKR L+SL V+VA P+ +T+   +  G S  +        WIPPLW LH 
Sbjct: 33  KGKRDQKRAMAKRGLKSLTVAVAAPVLVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHT 92

Query: 69  SSIGSSFLIGLAAWLVWADGGFHGGGNA 97
           + + SS L+GLAAWLVW DGGFH   NA
Sbjct: 93  TCLASSGLMGLAAWLVWVDGGFHKKPNA 120

[Close]

BLAST of Cla021740 vs. TrEMBL
Match: A0A0A0L583_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154290 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.0e-43
Identity = 86/110 (78.18%), Postives = 93/110 (84.55%), Query Frame = 1


Query: 1   MSSSNPPFKSRPESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWI 60
           M SSNPPFKSRPESKYTKAKRALRSLAVSVAIP+ LTIA IFLFGRS+RH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 61  PPLWFLHLSSIGSSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
            PLW + LSSIGSSFL+GLAAWLVWADGGFHGG NA        S  ++W
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW 110

[Close]

BLAST of Cla021740 vs. TrEMBL
Match: V7AZB6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G248000g PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-23
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 13  ESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPPLWFLHLSSIG 72
           ++K ++A+RALRSLA+ +A+P  LT+A+I LFG S R + N ++P W  PLWF+HL+S+G
Sbjct: 8   DTKKSQARRALRSLAIGIAVPFALTLAIIILFG-SGRRYNNISKPFWFAPLWFIHLASLG 67

Query: 73  SSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
           SSF +GLAAWLVWADGGF G  +A S      S  I+W
Sbjct: 68  SSFFMGLAAWLVWADGGFQGETDAMSLYIAHVSLSIVW 104

[Close]

BLAST of Cla021740 vs. TrEMBL
Match: A0A061EW61_THECC (TSPO(Outer membrane tryptophan-rich sensory protein)-related, putative OS=Theobroma cacao GN=TCM_021206 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.3e-23
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1


Query: 6   PPFKSRPESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPPLWF 65
           PP ++RPE K  +AKRAL SL  ++AIPL LT+ VIF FG   R+    ++P W PPLW 
Sbjct: 9   PPVRARPEDKKARAKRALCSLLTAIAIPLSLTLFVIFKFGSGKRYRAMAHKPFWFPPLWL 68

Query: 66  LHLSSIGSSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
           +HL+SIG+S L+ LAAWLVW D GFH   NA        S  I+W
Sbjct: 69  IHLASIGTSILMSLAAWLVWVDRGFHVNSNALPLYVSQISLSIVW 113

[Close]

BLAST of Cla021740 vs. TrEMBL
Match: V4RYC8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007035mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-22
Identity = 49/108 (45.37%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPP 62
           +++P    +PE+K   AKRA RSLA S+++PL +T+A+I +FG S +++    +P+W PP
Sbjct: 12  NNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFG-SGKNYRALPKPLWFPP 71

Query: 63  LWFLHLSSIGSSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
           LWF+HL+++ SSF + LAAWLVWADGGFH   ++        S  +LW
Sbjct: 72  LWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLW 118

[Close]

BLAST of Cla021740 vs. TrEMBL
Match: A0A072VGH3_MEDTR (TSPO/MBR family protein OS=Medicago truncatula GN=MTR_2g436790 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-22
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 13  ESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPPLWFLHLSSIG 72
           ESK +KAKRALRSL + +AIP+ LT+ +I LFG S R +    +P W  PLW++HL+++G
Sbjct: 8   ESKRSKAKRALRSLGIGIAIPIALTLTIIILFG-SGRKYNVLAKPFWFAPLWYIHLATLG 67

Query: 73  SSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
           SSF +GLAAWLVWADGGF G  +A S      S  I+W
Sbjct: 68  SSFFMGLAAWLVWADGGFQGETDALSFYIAHVSLSIVW 104

[Close]

BLAST of Cla021740 vs. NCBI nr
Match: gi|449433405|ref|XP_004134488.1| (PREDICTED: translocator protein homolog [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 8.6e-43
Identity = 86/110 (78.18%), Postives = 93/110 (84.55%), Query Frame = 1


Query: 1   MSSSNPPFKSRPESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWI 60
           M SSNPPFKSRPESKYTKAKRALRSLAVSVAIP+ LTIA IFLFGRS+RH+PNRNRPIWI
Sbjct: 1   MPSSNPPFKSRPESKYTKAKRALRSLAVSVAIPVSLTIAAIFLFGRSSRHYPNRNRPIWI 60

Query: 61  PPLWFLHLSSIGSSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
            PLW + LSSIGSSFL+GLAAWLVWADGGFHGG NA        S  ++W
Sbjct: 61  GPLWLIQLSSIGSSFLVGLAAWLVWADGGFHGGSNALPLYIAHLSLSVVW 110

[Close]

BLAST of Cla021740 vs. NCBI nr
Match: gi|593330967|ref|XP_007138910.1| (hypothetical protein PHAVU_009G248000g [Phaseolus vulgaris])

HSP 1 Score: 116.3 bits (290), Expect = 3.4e-23
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 1


Query: 13  ESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPPLWFLHLSSIG 72
           ++K ++A+RALRSLA+ +A+P  LT+A+I LFG S R + N ++P W  PLWF+HL+S+G
Sbjct: 8   DTKKSQARRALRSLAIGIAVPFALTLAIIILFG-SGRRYNNISKPFWFAPLWFIHLASLG 67

Query: 73  SSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
           SSF +GLAAWLVWADGGF G  +A S      S  I+W
Sbjct: 68  SSFFMGLAAWLVWADGGFQGETDAMSLYIAHVSLSIVW 104

[Close]

BLAST of Cla021740 vs. NCBI nr
Match: gi|590661109|ref|XP_007035583.1| (TSPO(outer membrane tryptophan-rich sensory protein)-related, putative [Theobroma cacao])

HSP 1 Score: 115.2 bits (287), Expect = 7.6e-23
Identity = 54/105 (51.43%), Postives = 68/105 (64.76%), Query Frame = 1


Query: 6   PPFKSRPESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPPLWF 65
           PP ++RPE K  +AKRAL SL  ++AIPL LT+ VIF FG   R+    ++P W PPLW 
Sbjct: 9   PPVRARPEDKKARAKRALCSLLTAIAIPLSLTLFVIFKFGSGKRYRAMAHKPFWFPPLWL 68

Query: 66  LHLSSIGSSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
           +HL+SIG+S L+ LAAWLVW D GFH   NA        S  I+W
Sbjct: 69  IHLASIGTSILMSLAAWLVWVDRGFHVNSNALPLYVSQISLSIVW 113

[Close]

BLAST of Cla021740 vs. NCBI nr
Match: gi|922389660|ref|XP_013463253.1| (TSPO/MBR family protein [Medicago truncatula])

HSP 1 Score: 112.1 bits (279), Expect = 6.4e-22
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 13  ESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPPLWFLHLSSIG 72
           ESK +KAKRALRSL + +AIP+ LT+ +I LFG S R +    +P W  PLW++HL+++G
Sbjct: 8   ESKRSKAKRALRSLGIGIAIPIALTLTIIILFG-SGRKYNVLAKPFWFAPLWYIHLATLG 67

Query: 73  SSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
           SSF +GLAAWLVWADGGF G  +A S      S  I+W
Sbjct: 68  SSFFMGLAAWLVWADGGFQGETDALSFYIAHVSLSIVW 104

[Close]

BLAST of Cla021740 vs. NCBI nr
Match: gi|567852837|ref|XP_006419582.1| (hypothetical protein CICLE_v10007035mg [Citrus clementina])

HSP 1 Score: 112.1 bits (279), Expect = 6.4e-22
Identity = 49/108 (45.37%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 3   SSNPPFKSRPESKYTKAKRALRSLAVSVAIPLFLTIAVIFLFGRSARHFPNRNRPIWIPP 62
           +++P    +PE+K   AKRA RSLA S+++PL +T+A+I +FG S +++    +P+W PP
Sbjct: 12  NNSPTTSHKPETKMISAKRAFRSLAFSISVPLSVTLAIICIFG-SGKNYRALPKPLWFPP 71

Query: 63  LWFLHLSSIGSSFLIGLAAWLVWADGGFHGGGNATSRIFLLASFGILW 111
           LWF+HL+++ SSF + LAAWLVWADGGFH   ++        S  +LW
Sbjct: 72  LWFIHLATLSSSFFMSLAAWLVWADGGFHARSDSLLLYVAQVSLSVLW 118

The following BLAST results are available for this feature:

BLAST of Cla021740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TSPO_ARATH	1.8e-16	46.59	Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1	[more]

BLAST of Cla021740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L583_CUCSA	6.0e-43	78.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G154290 PE=4 SV=1	[more]
V7AZB6_PHAVU	2.4e-23	54.08	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G248000g PE=4 SV=1	[more]
A0A061EW61_THECC	5.3e-23	51.43	TSPO(Outer membrane tryptophan-rich sensory protein)-related, putative OS=Theobr...	[more]
V4RYC8_9ROSI	4.5e-22	45.37	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007035mg PE=4 SV=1	[more]
A0A072VGH3_MEDTR	4.5e-22	54.08	TSPO/MBR family protein OS=Medicago truncatula GN=MTR_2g436790 PE=4 SV=1	[more]

BLAST of Cla021740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433405\|ref\|XP_004134488.1\|	8.6e-43	78.18	PREDICTED: translocator protein homolog [Cucumis sativus]	[more]
gi\|593330967\|ref\|XP_007138910.1\|	3.4e-23	54.08	hypothetical protein PHAVU_009G248000g [Phaseolus vulgaris]	[more]
gi\|590661109\|ref\|XP_007035583.1\|	7.6e-23	51.43	TSPO(outer membrane tryptophan-rich sensory protein)-related, putative [Theobrom...	[more]
gi\|922389660\|ref\|XP_013463253.1\|	6.4e-22	54.08	TSPO/MBR family protein [Medicago truncatula]	[more]
gi\|567852837\|ref\|XP_006419582.1\|	6.4e-22	45.37	hypothetical protein CICLE_v10007035mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004307	TspO_MBR

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0044444	cytoplasmic part
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU48151	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021740	Cla021740.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU48151	WMU48151	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 7..110 score: 1.0
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 29..103 score: 5.
None	No IPR available	PANTHER	PTHR10057:SF6	SUBFAMILY NOT NAMED	coord: 7..110 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021740	Cla97C05G087600	Watermelon (97103) v2	wmwmbB206
Cla021740	Csa7G396370	Cucumber (Chinese Long) v2	cuwmB588
Cla021740	Csa3G154290	Cucumber (Chinese Long) v2	cuwmB233
Cla021740	MELO3C006663	Melon (DHL92) v3.5.1	mewmB461
Cla021740	CSPI03G14400	Wild cucumber (PI 183967)	cpiwmB231
Cla021740	Cucsa.253100	Cucumber (Gy14) v1	cgywmB479
Cla021740	Cucsa.205710	Cucumber (Gy14) v1	cgywmB405
Cla021740	CmaCh06G014990	Cucurbita maxima (Rimu)	cmawmB798
Cla021740	CmoCh06G014950	Cucurbita moschata (Rifu)	cmowmB793
Cla021740	Lsi05G015390	Bottle gourd (USVL1VR-Ls)	lsiwmB362
Cla021740	Cp4.1LG12g05440	Cucurbita pepo (Zucchini)	cpewmB153
Cla021740	Cp4.1LG08g04900	Cucurbita pepo (Zucchini)	cpewmB845
Cla021740	CsGy7G015750	Cucumber (Gy14) v2	cgybwmB552
Cla021740	CsGy3G014540	Cucumber (Gy14) v2	cgybwmB217
Cla021740	MELO3C006663.2	Melon (DHL92) v3.6.1	medwmB447
Cla021740	Carg17343	Silver-seed gourd	carwmB0603
Cla021740	CsaV3_3G014620	Cucumber (Chinese Long) v3	cucwmB239
Cla021740	Bhi01G000717	Wax gourd	wgowmB201

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla021740	Cla015051	Watermelon (97103) v1	wmwmB022

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021740	Bottle gourd (USVL1VR-Ls)	lsiwmB017
Cla021740	Cucumber (Gy14) v2	cgybwmB041
Cla021740	Melon (DHL92) v3.6.1	medwmB094
Cla021740	Melon (DHL92) v3.6.1	medwmB271
Cla021740	Silver-seed gourd	carwmB0070
Cla021740	Silver-seed gourd	carwmB0700
Cla021740	Silver-seed gourd	carwmB0834
Cla021740	Cucumber (Chinese Long) v3	cucwmB046
Cla021740	Watermelon (97103) v2	wmwmbB217
Cla021740	Wax gourd	wgowmB069
Cla021740	Watermelon (97103) v1	wmwmB138
Cla021740	Cucurbita maxima (Rimu)	cmawmB005
Cla021740	Cucurbita maxima (Rimu)	cmawmB345
Cla021740	Cucurbita maxima (Rimu)	cmawmB242
Cla021740	Cucurbita maxima (Rimu)	cmawmB344
Cla021740	Cucurbita maxima (Rimu)	cmawmB869
Cla021740	Cucurbita moschata (Rifu)	cmowmB231
Cla021740	Cucurbita moschata (Rifu)	cmowmB341
Cla021740	Cucurbita moschata (Rifu)	cmowmB856
Cla021740	Melon (DHL92) v3.5.1	mewmB096
Cla021740	Watermelon (Charleston Gray)	wcgwmB286
Cla021740	Watermelon (Charleston Gray)	wcgwmB332
Cla021740	Cucurbita pepo (Zucchini)	cpewmB152
Cla021740	Cucurbita pepo (Zucchini)	cpewmB329
Cla021740	Cucurbita pepo (Zucchini)	cpewmB613