WMU48151 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU48151
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	translationally controlled tumor protein
Location	Chr5 : 5534137 .. 5856255 (-)
Sequence length	602

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACGCTCCTGGTTGCTGTACTCTTCCTCTCCCCCAGATATCTTCTTTGCAGGAGCGATCCGGGAGTCAATTTTGCTATCATGTTGGTTTACACCGACCTTCTCTCTGGTGATGAGCTTCTCTCGGATTCGTTTCCATACAAGGAAATCGAGAATGGAATGATTTTGGGAAGTCGATGGAAAGTGGGTCGTTCAAGGAGCGATTGATGTGGATATTGGTGCTAATCCTTCTGCTGAAGGTGCCGGTGAGGACGAGGGTGTTGATGATCAGGAAGTGCTGTAAGAGAGAGGATTATTCGGGCATTTCTAGTAGAAGAGCAGAAGATTGTGGCCTTGATCTTGCAGTTAACTACAATTCCCAGAATGTCCAGGTTATGACATTTGGACAACCTCGTATTGGCAATGCAGTATTTGCATCTTACTATAGCAATATAGTGCCAAATTCGTTTCGGGTTACGAATGGAAAATGATGTCCGTCCCCCATTTGCCTCCATTTTATGCTTATTTTCCTAAAAAAACATATCACCATTTTCCTAGAGAGGTATGTCTCTTTGATATCAAACAATGTCTCAATTTCAACTGTTAAATGGGGGTTGTTAAAGTAA

Library


Library category	ESTs
watermelon fruit 18d library	2

Homology

[Close]

BLAST of WMU48151 vs. TAIR10
Match: AT5G18630.1 (AT5G18630.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3


Query: 315 AEDCGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSNIVPNSFRVTNGK 374
           A  CGLDL VN   +NVQVMTFGQPR+GNA FASYYS +VPN+FR+T+ +
Sbjct: 183 ASFCGLDLVVNEGEENVQVMTFGQPRVGNAAFASYYSLLVPNTFRITHDR 232

Query: 375  434
           
Sbjct: 243  232

Query: 435  465
           
Sbjct: 303  232

HSP 2 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 2


Query: 473 VPHLPPFYAYFPKKTYHHFPREVCLFD 532
           VPHLPP+Y +FP+KTYHHFP EV + D
Sbjct: 235 VPHLPPYYYHFPQKTYHHFPTEVWVKD 261

Query: 533  554
           
Sbjct: 295  261

[Close]

BLAST of WMU48151 vs. TAIR10
Match: AT5G18640.1 (AT5G18640.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-12
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 3


Query: 315 AEDCGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSNIVPNSFRVTNGK 374
           A  C LDL VN   +NVQVMTFGQPR+GNA FASY++ +VPN+FR+ + +
Sbjct: 182 ASFCALDLVVNEGEENVQVMTFGQPRVGNAAFASYFNLLVPNTFRIIHDR 231

Query: 375  434
           
Sbjct: 242  231

Query: 435  465
           
Sbjct: 302  231

HSP 2 Score: 49.3 bits (116), Expect = 3.2e-06
Identity = 19/28 (67.86%), Postives = 21/28 (75.00%), Query Frame = 2


Query: 473 VPHLPPFYAYFPKKTYHHFPREVCLFDI 532
           VPHLPP+Y  FP+KTYHHFP EV L ++
Sbjct: 234 VPHLPPYYHLFPQKTYHHFPTEVWLTEL 261

Query: 533  557
           
Sbjct: 294  261

[Close]

BLAST of WMU48151 vs. TAIR10
Match: AT3G05540.1 (AT3G05540.1 Methionine sulfoxide reductase (MSS4-like) family protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 2


Query: 164 WEVDGKWVVQGAIDVDIGANPSAEGAGEDEGVDDQEV 223
           WEV+GKWVV+GA+D DIGANP  EG GEDEGVDDQ V
Sbjct: 29  WEVEGKWVVKGAMDFDIGANPGEEG-GEDEGVDDQAV 64

Query: 224  275
           
Sbjct: 89   64

HSP 2 Score: 30.0 bits (66), Expect = 2.0e+00
Identity = 16/35 (45.71%), Postives = 16/35 (45.71%), Query Frame = 1


Query: 79  MLVYTXXXXXXXXXXXXFPYKEIENGMILGSRWKV 138
           MLVY             FPYKEIENGM+    W+V
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGML----WEV 31

Query: 139  184
           
Sbjct: 61   31

[Close]

BLAST of WMU48151 vs. TAIR10
Match: AT3G16640.1 (AT3G16640.1 translationally controlled tumor protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 27/34 (79.41%), Postives = 28/34 (82.35%), Query Frame = 2


Query: 164 WEVDGKWVVQGAIDVDIGANPSAEGAGEDEGVDD 223
           WEV+GKWV  GA+DV+IGANPSAE  GEDEGVDD
Sbjct: 29  WEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDD 62

Query: 224  266
           
Sbjct: 89   62

[Close]

BLAST of WMU48151 vs. Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.4e-13
Identity = 34/37 (91.89%), Postives = 33/37 (89.19%), Query Frame = 2


Query: 164 WEVDGKWVVQGAIDVDIGANPSAEGAGEDEGVDDQEV 223
           WEVDGKWVVQGAIDVDIGANPSAEG G+DEGVDDQ V
Sbjct: 29  WEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAV 65

Query: 224  275
           
Sbjct: 89   65

[Close]

BLAST of WMU48151 vs. Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 2


Query: 164 WEVDGKWVVQGAIDVDIGANPSAEGAGEDEGVDDQEV 223
           WEV+GKWVVQGA+DVDIGANPSAEG GEDEGVDDQ V
Sbjct: 29  WEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAV 65

Query: 224  275
           
Sbjct: 89   65

HSP 2 Score: 30.0 bits (66), Expect = 3.6e+01
Identity = 16/35 (45.71%), Postives = 16/35 (45.71%), Query Frame = 1


Query: 79  MLVYTXXXXXXXXXXXXFPYKEIENGMILGSRWKV 138
           MLVY             FPYKE+ENGMI    W+V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKELENGMI----WEV 31

Query: 139  184
           
Sbjct: 61   31

[Close]

BLAST of WMU48151 vs. Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.3e-12
Identity = 33/37 (89.19%), Postives = 32/37 (86.49%), Query Frame = 2


Query: 164 WEVDGKWVVQGAIDVDIGANPSAEGAGEDEGVDDQEV 223
           WEVDG WVVQGA+DVDIGANPSAEG GEDEGVDDQ V
Sbjct: 29  WEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAV 65

Query: 224  275
           
Sbjct: 89   65

[Close]

BLAST of WMU48151 vs. Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-12
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 2


Query: 164 WEVDGKWVVQGAIDVDIGANPSAEGAGEDEGVDDQEV 223
           WEV+GKWVVQGA+DVDIGANPSAEGA EDEGVDDQ V
Sbjct: 29  WEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAV 65

Query: 224  275
           
Sbjct: 89   65

[Close]

BLAST of WMU48151 vs. Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.2e-12
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 2


Query: 164 WEVDGKWVVQGAIDVDIGANPSAEGAGEDEGVDDQEV 223
           WEV+GKWVV+GA+DVDIGANPSAEG GEDEGVDDQ V
Sbjct: 29  WEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAV 65

Query: 224  275
           
Sbjct: 89   65

HSP 2 Score: 30.8 bits (68), Expect = 2.1e+01
Identity = 17/35 (48.57%), Postives = 16/35 (45.71%), Query Frame = 1


Query: 79  MLVYTXXXXXXXXXXXXFPYKEIENGMILGSRWKV 138
           MLVY             FPYKEIENGMI    W+V
Sbjct: 1   MLVYQDLVSGDELLSDSFPYKEIENGMI----WEV 31

Query: 139  184
           
Sbjct: 61   31

[Close]

BLAST of WMU48151 vs. NCBI nr
Match: gi|449432813|ref|XP_004134193.1| (PREDICTED: lipase [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 3


Query: 324 CGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSNIVPNSFRVTNG 383
           CGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYS IVPN+FRVTNG
Sbjct: 185 CGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSKIVPNTFRVTNG 230

Query: 384  443
           
Sbjct: 245  230

Query: 444  462
           
Sbjct: 305  230

[Close]

BLAST of WMU48151 vs. NCBI nr
Match: gi|659076691|ref|XP_008438817.1| (PREDICTED: lipase-like [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-17
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 3


Query: 324 CGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSNIVPNSFRVTNG 383
           CGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYS IVPN+FRVTNG
Sbjct: 185 CGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSKIVPNTFRVTNG 230

Query: 384  443
           
Sbjct: 245  230

Query: 444  462
           
Sbjct: 305  230

[Close]

BLAST of WMU48151 vs. NCBI nr
Match: gi|629076814|gb|KCW44781.1| (hypothetical protein EUGRSUZ_L01655 [Eucalyptus grandis])

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 3


Query: 324 CGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSNIVPNSFRVTNG 383
           CGLDL VN  +++VQVMTFGQPRIGNAVFASYYS +VPNSFRVTNG
Sbjct: 218 CGLDLRVNCLAESVQVMTFGQPRIGNAVFASYYSELVPNSFRVTNG 263

Query: 384  443
           
Sbjct: 278  263

Query: 444  462
           
Sbjct: 338  263

[Close]

BLAST of WMU48151 vs. NCBI nr
Match: gi|702511921|ref|XP_010040920.1| (PREDICTED: lipase-like [Eucalyptus grandis])

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 3


Query: 324 CGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSNIVPNSFRVTNG 383
           CGLDL VN  +++VQVMTFGQPRIGNAVFASYYS +VPNSFRVTNG
Sbjct: 184 CGLDLRVNCLAESVQVMTFGQPRIGNAVFASYYSELVPNSFRVTNG 229

Query: 384  443
           
Sbjct: 244  229

Query: 444  462
           
Sbjct: 304  229

[Close]

BLAST of WMU48151 vs. NCBI nr
Match: gi|702262575|ref|XP_010036894.1| (PREDICTED: lipase-like [Eucalyptus grandis])

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 3


Query: 324 CGLDLAVNYNSQNVQVMTFGQPRIGNAVFASYYSNIVPNSFRVTNG 383
           CGLDL VN  +++VQVMTFGQPRIGNAVFASYYS +VPNSFRVTNG
Sbjct: 184 CGLDLRVNCLAESVQVMTFGQPRIGNAVFASYYSELVPNSFRVTNG 229

Query: 384  443
           
Sbjct: 244  229

Query: 444  462
           
Sbjct: 304  229

The following BLAST results are available for this feature:

BLAST of WMU48151 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G18630.1	1.9e-14	68.00	alpha/beta-Hydrolases superfamily protein	[more]
AT5G18640.1	3.0e-12	60.00	alpha/beta-Hydrolases superfamily protein	[more]
AT3G05540.1	2.2e-10	78.38	Methionine sulfoxide reductase (MSS4-like) family protein	[more]
AT3G16640.1	2.2e-10	79.41	translationally controlled tumor protein	[more]

BLAST of WMU48151 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TCTP_ORYSJ	4.4e-13	91.89	Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica...	[more]
TCTP_CUCMA	1.3e-12	89.19	Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=...	[more]
TCTP_HORVU	1.3e-12	89.19	Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2...	[more]
TCTP_HEVBR	1.7e-12	89.19	Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP P...	[more]
TCTP_CUCME	2.2e-12	86.49	Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV...	[more]

BLAST of WMU48151 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432813\|ref\|XP_004134193.1\|	6.5e-17	95.65	PREDICTED: lipase [Cucumis sativus]	[more]
gi\|659076691\|ref\|XP_008438817.1\|	6.5e-17	95.65	PREDICTED: lipase-like [Cucumis melo]	[more]
gi\|629076814\|gb\|KCW44781.1\|	4.4e-13	82.61	hypothetical protein EUGRSUZ_L01655 [Eucalyptus grandis]	[more]
gi\|702511921\|ref\|XP_010040920.1\|	4.4e-13	82.61	PREDICTED: lipase-like [Eucalyptus grandis]	[more]
gi\|702262575\|ref\|XP_010036894.1\|	4.4e-13	82.61	PREDICTED: lipase-like [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002921	Fungal_lipase-like
IPR011057	Mss4-like_sf
IPR011323	Mss4/transl-control_tumour
IPR018103	Translation_control_tumour_CS
IPR018105	Translational_control_tumour_p

Vocabulary: **Biological Process**
Term	Definition
GO:0006629	lipid metabolic process

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006629	lipid metabolic process

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021725	Cla021725	gene
Cla021728	Cla021728	gene
Cla021742	Cla021742	gene
Cla021719	Cla021719	gene
Cla021717	Cla021717	gene
Cla021718	Cla021718	gene
Cla021745	Cla021745	gene
Cla021744	Cla021744	gene
Cla021721	Cla021721	gene
Cla021714	Cla021714	gene
Cla021730	Cla021730	gene
Cla021736	Cla021736	gene
Cla021713	Cla021713	gene
Cla021729	Cla021729	gene
Cla021722	Cla021722	gene
Cla021734	Cla021734	gene
Cla021746	Cla021746	gene
Cla021747	Cla021747	gene
Cla021741	Cla021741	gene
Cla021727	Cla021727	gene
Cla021743	Cla021743	gene
Cla021735	Cla021735	gene
Cla021723	Cla021723	gene
Cla021720	Cla021720	gene
Cla021726	Cla021726	gene
Cla021731	Cla021731	gene
Cla021739	Cla021739	gene
Cla021732	Cla021732	gene
Cla021724	Cla021724	gene
Cla021738	Cla021738	gene
Cla021737	Cla021737	gene
Cla021733	Cla021733	gene
Cla021740	Cla021740	gene
Cla021715	Cla021715	gene
Cla021716	Cla021716	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0072791	S2_0072791	EST
S2_0180373	S2_0180373	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002921	Fungal lipase-like domain	PFAM	PF01764	Lipase_3	coord: 110..153 score: 2.
IPR011057	Mss4-like	unknown	SSF51316	Mss4-like	coord: 27..90 score: 1.5
IPR011323	Mss4/translationally controlled tumour-associated TCTP	GENE3D	G3DSA:2.170.150.10		coord: 27..90 score: 7.1
IPR018103	Translationally controlled tumour protein, conserved site	PROSITE	PS01002	TCTP_1	coord: 71..81 scor
IPR018105	Translationally controlled tumour protein	PRINTS	PR01653	TCTPROTEIN	coord: 27..47 score: 2.1E-13coord: 72..83 score: 2.1
IPR018105	Translationally controlled tumour protein	PANTHER	PTHR11991	TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED	coord: 2..91 score: 2.1
IPR018105	Translationally controlled tumour protein	PFAM	PF00838	TCTP	coord: 27..90 score: 5.5