CsGy7G015750 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy7G015750
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	translocator protein homolog
Location	Chr7 : 19617948 .. 19618523 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACCGATCTAAAACACCGAAAAACCGATGACTCCACCCCCACTTCCACCGTCTCTGCCGATGACAACGACGGTACCAAAAAATCCAAGAACAAAGTCATAGCCAAACGAGGCCTAAGATCTCTAGCTCTTGCCATCTCCATCCCCGTTTCCCTCACTCTCTTTTTCATCCTCCTATTCTCCAACTCCAAGAACTACTACCCAGCCTCCGCCCCGAAACCCTTCTGGGTCCCGTCGGCAAAGGTCGTAAACTGGGGGTCTTTGACTTCTAGCTTGTTAATGGGCGTCGCCGCCTGGCTGGTCTGGGCCGAGGGCGGATTCCACGCCAGACCCAACGCCCTATACCTTTATGGTTTGTATTCAGTGTTGTGTCTGACGTGGTACGCCCTCATGTTTGGTGCTGGCGCGCGACGGCTTAGTGCTTTGGCGTGTTTGGGAAAGACAGCAGCGTTGGTTGGGTGCGACCGGTTGTTTAGAGGAGTGAACCCACTTGCGGCAGATTTGGTTAAGCCATGCTTGGTTTGGTCTGTTTTGCTTACGGTTGTGAATCTCACTGTAGTCTCTCTTTGA

mRNA sequence

ATGGCTTCCACCGATCTAAAACACCGAAAAACCGATGACTCCACCCCCACTTCCACCGTCTCTGCCGATGACAACGACGGTACCAAAAAATCCAAGAACAAAGTCATAGCCAAACGAGGCCTAAGATCTCTAGCTCTTGCCATCTCCATCCCCGTTTCCCTCACTCTCTTTTTCATCCTCCTATTCTCCAACTCCAAGAACTACTACCCAGCCTCCGCCCCGAAACCCTTCTGGGTCCCGTCGGCAAAGGTCGTAAACTGGGGGTCTTTGACTTCTAGCTTGTTAATGGGCGTCGCCGCCTGGCTGGTCTGGGCCGAGGGCGGATTCCACGCCAGACCCAACGCCCTATACCTTTATGGTTTGTATTCAGTGTTGTGTCTGACGTGGTACGCCCTCATGTTTGGTGCTGGCGCGCGACGGCTTAGTGCTTTGGCGTGTTTGGGAAAGACAGCAGCGTTGGTTGGGTGCGACCGGTTGTTTAGAGGAGTGAACCCACTTGCGGCAGATTTGGTTAAGCCATGCTTGGTTTGGTCTGTTTTGCTTACGGTTGTGAATCTCACTGTAGTCTCTCTTTGA

Coding sequence (CDS)

ATGGCTTCCACCGATCTAAAACACCGAAAAACCGATGACTCCACCCCCACTTCCACCGTCTCTGCCGATGACAACGACGGTACCAAAAAATCCAAGAACAAAGTCATAGCCAAACGAGGCCTAAGATCTCTAGCTCTTGCCATCTCCATCCCCGTTTCCCTCACTCTCTTTTTCATCCTCCTATTCTCCAACTCCAAGAACTACTACCCAGCCTCCGCCCCGAAACCCTTCTGGGTCCCGTCGGCAAAGGTCGTAAACTGGGGGTCTTTGACTTCTAGCTTGTTAATGGGCGTCGCCGCCTGGCTGGTCTGGGCCGAGGGCGGATTCCACGCCAGACCCAACGCCCTATACCTTTATGGTTTGTATTCAGTGTTGTGTCTGACGTGGTACGCCCTCATGTTTGGTGCTGGCGCGCGACGGCTTAGTGCTTTGGCGTGTTTGGGAAAGACAGCAGCGTTGGTTGGGTGCGACCGGTTGTTTAGAGGAGTGAACCCACTTGCGGCAGATTTGGTTAAGCCATGCTTGGTTTGGTCTGTTTTGCTTACGGTTGTGAATCTCACTGTAGTCTCTCTTTGA

Protein sequence

MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFILLFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVSL

Homology

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BLAST of CsGy7G015750 vs. NCBI nr
Match: XP_004136174.1 (PREDICTED: translocator protein homolog [Cucumis sativus] >KGN44921.1 hypothetical protein Csa_7G396370 [Cucumis sativus])

HSP 1 Score: 369.4 bits (947), Expect = 7.4e-99
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60
           MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120
           LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180
           LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTVVNLTVVSL 192
           LTVVNLTVVSL
Sbjct: 181 LTVVNLTVVSL 191

[Close]

BLAST of CsGy7G015750 vs. NCBI nr
Match: XP_022992488.1 (translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 256.5 bits (654), Expect = 7.0e-65
Identity = 132/191 (69.11%), Postives = 159/191 (83.25%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60
           MAST+LKHR T DS   +  +A D   TK++KNK IAKRGL+SLA+A+SIP+++TL  IL
Sbjct: 1   MASTELKHRTTGDS--PAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60

Query: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120
           L S  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF A+PNALYLY 
Sbjct: 61  LLSKPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120

Query: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180
           LY VLC+ WY L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV 
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180

Query: 181 LTVVNLTVVSL 192
           LT+V+LT+VS+
Sbjct: 181 LTIVSLTMVSV 188

[Close]

BLAST of CsGy7G015750 vs. NCBI nr
Match: XP_023548365.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.4 bits (646), Expect = 5.9e-64
Identity = 130/191 (68.06%), Postives = 156/191 (81.68%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60
           MAST+LKHR T DS       A D    K++KNK IAKRGL+SLA+A+SIP+++TL  IL
Sbjct: 1   MASTELKHRTTGDS---PAAPAADEASAKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60

Query: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120
           L S  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF A+PNA+YLY 
Sbjct: 61  LLSRPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNAVYLYT 120

Query: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180
           LY VLC+ WY L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV 
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180

Query: 181 LTVVNLTVVSL 192
           LT+V+LT+VS+
Sbjct: 181 LTIVSLTMVSV 187

[Close]

BLAST of CsGy7G015750 vs. NCBI nr
Match: XP_022953735.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 252.7 bits (644), Expect = 1.0e-63
Identity = 130/191 (68.06%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60
           MAST+LKHR T DS   +  +A D    K+ KNK IAKRGL+SLA+A+SIP+++TL  IL
Sbjct: 1   MASTELKHRTTGDS--PAVPAAADEVSAKREKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60

Query: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120
           L +  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF ARPNALYLY 
Sbjct: 61  LLARPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180
           LY VLC+ W+ L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV 
Sbjct: 121 LYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180

Query: 181 LTVVNLTVVSL 192
           LT+V+LT+VS+
Sbjct: 181 LTIVSLTMVSV 188

[Close]

BLAST of CsGy7G015750 vs. NCBI nr
Match: XP_022151009.1 (translocator protein homolog [Momordica charantia])

HSP 1 Score: 195.3 bits (495), Expect = 1.9e-46
Identity = 108/190 (56.84%), Postives = 125/190 (65.79%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60
           MAS DLKHRK  +S  ++T                    GL+S            L  + 
Sbjct: 1   MASPDLKHRKPTESDDSATA------XXXXXXXXXXXXXGLKSXXXXXXXXXXXXLLAVY 60

Query: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120
           L S+    +P S+PKPFW PSA  VN GS  SSLLMG A WLVWA+GGFH+ PNALYLY 
Sbjct: 61  LLSDPTK-FPPSSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYT 120

Query: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180
           LY +LC TWY L+ GAGA RL+A+ACL KTAALVGCDRLFR VNP+AADLVKPCL WSV 
Sbjct: 121 LYVLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 180

Query: 181 LTVVNLTVVS 191
           LTVVNLT+V+
Sbjct: 181 LTVVNLTMVA 183

[Close]

BLAST of CsGy7G015750 vs. TAIR10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related)

HSP 1 Score: 137.9 bits (346), Expect = 6.6e-33
Identity = 80/193 (41.45%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTV-------SADDNDGTKKSKNKVIAKRGLRSLALAISIPVS 60
           M S D+++R  DD    +T        SADDN G K+ + + +AKRGL+SL +A++ PV 
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKG-KRDQKRAMAKRGLKSLTVAVAAPVL 60

Query: 61  LTLFFILLFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARP 120
           +TL F   F  + + Y   A    W+P   +++   L SS LMG+AAWLVW +GGFH +P
Sbjct: 61  VTL-FATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKP 120

Query: 121 NALYLYGLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKP 180
           NALYLY    +LCL W  + F  G+        LG++AAL GC + F  ++P+A +LVKP
Sbjct: 121 NALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKP 180

Query: 181 CLVWSVLLTVVNL 187
           CL W+  +  VN+
Sbjct: 181 CLAWAAFVAAVNV 191

[Close]

BLAST of CsGy7G015750 vs. Swiss-Prot
Match: sp|O82245|TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-31
Identity = 80/193 (41.45%), Postives = 115/193 (59.59%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTV-------SADDNDGTKKSKNKVIAKRGLRSLALAISIPVS 60
           M S D+++R  DD    +T        SADDN G K+ + + +AKRGL+SL +A++ PV 
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKG-KRDQKRAMAKRGLKSLTVAVAAPVL 60

Query: 61  LTLFFILLFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARP 120
           +TL F   F  + + Y   A    W+P   +++   L SS LMG+AAWLVW +GGFH +P
Sbjct: 61  VTL-FATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKP 120

Query: 121 NALYLYGLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKP 180
           NALYLY    +LCL W  + F  G+        LG++AAL GC + F  ++P+A +LVKP
Sbjct: 121 NALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKP 180

Query: 181 CLVWSVLLTVVNL 187
           CL W+  +  VN+
Sbjct: 181 CLAWAAFVAAVNV 191

[Close]

BLAST of CsGy7G015750 vs. TrEMBL
Match: tr|A0A0A0KAU9|A0A0A0KAU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 4.9e-99
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60
           MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120
           LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180
           LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTVVNLTVVSL 192
           LTVVNLTVVSL
Sbjct: 181 LTVVNLTVVSL 191

[Close]

BLAST of CsGy7G015750 vs. TrEMBL
Match: tr|A0A1R3IH26|A0A1R3IH26_9ROSI (TspO/MBR-related protein OS=Corchorus olitorius OX=93759 GN=COLO4_23373 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 9.1e-37
Identity = 93/194 (47.94%), Postives = 121/194 (62.37%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDND---GTKKSKNKVIAKRGLRSLALAISIPVSLTLF 60
           M S  LK R   D  P  T   D+N+   G ++ K   +AKRG+RSLA+A+S P+SLTL 
Sbjct: 1   MESQTLKQRLVRDDDPVVTKDKDNNEKNRGNRRDKRMAMAKRGIRSLAVAVSFPLSLTLL 60

Query: 61  FILLFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALY 120
            I +F +  NY  ++ PKPFW P A +++   + SS LMG++AWLVWAEGGFHARP AL 
Sbjct: 61  NIYMFGSGHNY--SALPKPFWFPPAWLLHITCMASSFLMGLSAWLVWAEGGFHARPTALS 120

Query: 121 LYGLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVW 180
           LY     L L W  ++F   A  +  + CL    ALVGC R FR VNP+A +LVKPCL W
Sbjct: 121 LYMAQLGLSLLWTPIVFWLRASWVGLVVCLAAFGALVGCWRDFRAVNPIAGNLVKPCLAW 180

Query: 181 SVLLTVVNLTVVSL 192
           +  L +VNL +V L
Sbjct: 181 AAFLAIVNLKLVFL 192

[Close]

BLAST of CsGy7G015750 vs. TrEMBL
Match: tr|I0B680|I0B680_GOSHI (Putative peripheral-type benzodiazepine receptor OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.9e-36
Identity = 90/191 (47.12%), Postives = 114/191 (59.69%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60
           M S +LKHR  DD   T+T S + N   ++ K   +AKRGLRSL +A+S P+SLTL  I 
Sbjct: 1   MESQNLKHRSRDDPRFTTTTSNEKNRANRREKRMAMAKRGLRSLVIAVSFPLSLTLLNIY 60

Query: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120
           LF + + Y  AS  KPFW P   +++ G L SS LMG++AW VW EGGFH +P AL LY 
Sbjct: 61  LFGSGRGY--ASLAKPFWFPPLWLLHTGCLASSFLMGLSAWFVWVEGGFHVKPTALSLYL 120

Query: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180
            Y  L + W+  +   GA R   L  L     LVGC R FR VNP+A + V PCL W+  
Sbjct: 121 GYLGLSMAWHPTVLWMGASRAGLLVNLAMVGTLVGCSRDFRKVNPIAGNSVMPCLAWAAF 180

Query: 181 LTVVNLTVVSL 192
           L  VNL +V L
Sbjct: 181 LATVNLKLVFL 189

[Close]

BLAST of CsGy7G015750 vs. TrEMBL
Match: tr|A0A2P5DYY4|A0A2P5DYY4_PARAD (TspO/MBR-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_017690 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.9e-36
Identity = 95/197 (48.22%), Postives = 122/197 (61.93%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNK------VIAKRGLRSLALAISIPVSL 60
           M S DLKHR T       T +A D+ G+ K K K       +AKRGLRSLA+AISIPVSL
Sbjct: 1   MESQDLKHRST-------TATAIDSGGSSKKKGKRDNRRISMAKRGLRSLAVAISIPVSL 60

Query: 61  TLFFILLFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPN 120
           TL  I L  + + Y+ +SA  PFW P    +    + SS LMG+AAWLVWAE GFH RP 
Sbjct: 61  TLLAIYL-GSGEGYHTSSATVPFWFPPIWALYSTCVASSFLMGLAAWLVWAESGFHRRPT 120

Query: 121 ALYLYGLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPC 180
           ALYLY     L L W  ++FGAG+     + C     ALVGC ++F+ VNP+A++++KPC
Sbjct: 121 ALYLYWAQLSLSLIWDLVLFGAGSSWAGLMFCAAMLGALVGCYQVFKEVNPIASEVLKPC 180

Query: 181 LVWSVLLTVVNLTVVSL 192
           L W+  LT+VN  +V L
Sbjct: 181 LAWTAFLTLVNFRLVFL 189

[Close]

BLAST of CsGy7G015750 vs. TrEMBL
Match: tr|A0A1R3H0K0|A0A1R3H0K0_COCAP (TspO/MBR-related protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22259 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.7e-35
Identity = 92/194 (47.42%), Postives = 119/194 (61.34%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVSADDND---GTKKSKNKVIAKRGLRSLALAISIPVSLTLF 60
           M S  LK R   D  P  T   D+N+   G ++ K   +AKRG+RSLA+A+S P+SLTL 
Sbjct: 1   MESQTLKQRLVRDDDPVVTKDKDNNEKNRGNRRDKRMAMAKRGIRSLAVAVSFPLSLTLL 60

Query: 61  FILLFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALY 120
            I +F +  NY   + PKPFW P A +++   + SS LMG++AWLVWAEGGFHARP AL 
Sbjct: 61  NIYMFGSGHNY--GALPKPFWFPPAWLLHITCMASSFLMGLSAWLVWAEGGFHARPTALS 120

Query: 121 LYGLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVW 180
           LY     L L W  ++F   A  +  +  L    ALVGC R FR VNP+A +LVKPCL W
Sbjct: 121 LYMAQLGLSLLWTPIVFWLRASWVGLVVLLAAFGALVGCWRDFRAVNPIAGNLVKPCLAW 180

Query: 181 SVLLTVVNLTVVSL 192
           +  L +VNL +V L
Sbjct: 181 AAFLAIVNLKLVFL 192

The following BLAST results are available for this feature:

BLAST of CsGy7G015750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136174.1	7.4e-99	100.00	PREDICTED: translocator protein homolog [Cucumis sativus] >KGN44921.1 hypothetic...	[more]
XP_022992488.1	7.0e-65	69.11	translocator protein homolog [Cucurbita maxima]	[more]
XP_023548365.1	5.9e-64	68.06	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022953735.1	1.0e-63	68.06	translocator protein homolog [Cucurbita moschata]	[more]
XP_022151009.1	1.9e-46	56.84	translocator protein homolog [Momordica charantia]	[more]

BLAST of CsGy7G015750 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47770.1	6.6e-33	41.45	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

BLAST of CsGy7G015750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82245\|TSPO_ARATH	1.2e-31	41.45	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]

BLAST of CsGy7G015750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAU9\|A0A0A0KAU9_CUCSA	4.9e-99	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=4 SV=1	[more]
tr\|A0A1R3IH26\|A0A1R3IH26_9ROSI	9.1e-37	47.94	TspO/MBR-related protein OS=Corchorus olitorius OX=93759 GN=COLO4_23373 PE=4 SV=...	[more]
tr\|I0B680\|I0B680_GOSHI	5.9e-36	47.12	Putative peripheral-type benzodiazepine receptor OS=Gossypium hirsutum OX=3635 P...	[more]
tr\|A0A2P5DYY4\|A0A2P5DYY4_PARAD	5.9e-36	48.22	TspO/MBR-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_017690 P...	[more]
tr\|A0A1R3H0K0\|A0A1R3H0K0_COCAP	1.7e-35	47.42	TspO/MBR-related protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22259 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR038330	TspO/MBR-related_sf
IPR004307	TspO_MBR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy7G015750.1	CsGy7G015750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 33..191 e-value: 6.8E-28 score: 94.3
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 47..189 e-value: 1.4E-16 score: 60.7
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 29..189
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 44..189 e-value: 1.24586E-24 score: 93.7156
IPR038330	TspO/MBR-related superfamily	GENE3D	G3DSA:1.20.1260.100		coord: 41..191 e-value: 4.5E-18 score: 67.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR10057:SF6	SUBFAMILY NOT NAMED	coord: 29..189

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy7G015750	Cla021740	Watermelon (97103) v1	cgybwmB552
CsGy7G015750	Cla015051	Watermelon (97103) v1	cgybwmB530
CsGy7G015750	Csa7G396370	Cucumber (Chinese Long) v2	cgybcuB323
CsGy7G015750	Csa3G154290	Cucumber (Chinese Long) v2	cgybcuB310
CsGy7G015750	MELO3C016017	Melon (DHL92) v3.5.1	cgybmeB470
CsGy7G015750	ClCG09G006030	Watermelon (Charleston Gray)	cgybwcgB486
CsGy7G015750	CSPI07G17310	Wild cucumber (PI 183967)	cgybcpiB331
CsGy7G015750	CmaCh17G011010	Cucurbita maxima (Rimu)	cgybcmaB925
CsGy7G015750	CmaCh06G014990	Cucurbita maxima (Rimu)	cgybcmaB971
CsGy7G015750	CmoCh17G010760	Cucurbita moschata (Rifu)	cgybcmoB909
CsGy7G015750	Lsi02G023870	Bottle gourd (USVL1VR-Ls)	cgyblsiB472
CsGy7G015750	Cp4.1LG08g04900	Cucurbita pepo (Zucchini)	cgybcpeB989
CsGy7G015750	Cp4.1LG12g05440	Cucurbita pepo (Zucchini)	cgybcpeB906
CsGy7G015750	MELO3C016017.2	Melon (DHL92) v3.6.1	cgybmedB467
CsGy7G015750	CsaV3_7G029110	Cucumber (Chinese Long) v3	cgybcucB347
CsGy7G015750	Cla97C05G087600	Watermelon (97103) v2	cgybwmbB510
CsGy7G015750	Cla97C09G168590	Watermelon (97103) v2	cgybwmbB543
CsGy7G015750	Bhi09G000700	Wax gourd	cgybwgoB660
CsGy7G015750	Bhi01G000717	Wax gourd	cgybwgoB626
CsGy7G015750	Carg07183	Silver-seed gourd	carcgybB0120

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy7G015750	Silver-seed gourd	carcgybB0807
CsGy7G015750	Cucumber (Chinese Long) v3	cgybcucB336
CsGy7G015750	Watermelon (97103) v2	cgybwmbB490
CsGy7G015750	Wax gourd	cgybwgoB618
CsGy7G015750	Cucumber (Gy14) v2	cgybcgybB134
CsGy7G015750	Cucurbita maxima (Rimu)	cgybcmaB973
CsGy7G015750	Cucurbita moschata (Rifu)	cgybcmoB955
CsGy7G015750	Cucurbita pepo (Zucchini)	cgybcpeB931
CsGy7G015750	Melon (DHL92) v3.5.1	cgybmeB501
CsGy7G015750	Melon (DHL92) v3.6.1	cgybmedB497
CsGy7G015750	Watermelon (Charleston Gray)	cgybwcgB492
CsGy7G015750	Watermelon (97103) v1	cgybwmB537