CsaV3_7G029110 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G029110
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionTspO/MBR-related protein
Locationchr7 : 18418255 .. 18418830 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCACCGATCTAAAACACCGAAAAACCGATGACTCCACCCCCACTTCCACCGTCTCTGCCGATGACAACGACGGTACCAAAAAATCCAAGAACAAAGTCATAGCCAAACGAGGCCTAAGATCTCTAGCTCTTGCCATCTCCATCCCCGTTTCCCTCACTCTCTTTTTCATCCTCCTATTCTCCAACTCCAAGAACTACTACCCAGCCTCCGCCCCGAAACCCTTCTGGGTCCCGTCGGCAAAGGTCGTAAACTGGGGGTCTTTGACTTCTAGCTTGTTAATGGGCGTCGCCGCCTGGCTGGTCTGGGCCGAGGGCGGATTCCACGCCAGACCCAACGCCCTATACCTTTATGGTTTGTATTCAGTGTTGTGTCTGACGTGGTACGCCCTCATGTTTGGTGCTGGCGCGCGACGGCTTAGTGCTTTGGCGTGTTTGGGAAAGACAGCAGCGTTGGTTGGGTGCGACCGGTTGTTTAGAGGAGTGAACCCACTTGCGGCAGATTTGGTTAAGCCATGCTTGGTTTGGTCTGTTTTGCTTACGGTTGTGAATCTCACTGTAGTCTCTCTTTGA

mRNA sequence

ATGGCTTCCACCGATCTAAAACACCGAAAAACCGATGACTCCACCCCCACTTCCACCGTCTCTGCCGATGACAACGACGCCTCCGCCCCGAAACCCTTCTGGGTCCCGTCGGCAAAGGTCGTAAACTGGGGGTCTTTGACTTCTAGCTTGTTAATGGGCGTCGCCGCCTGGCTGGTCTGGGCCGAGGGCGGATTCCACGCCAGACCCAACGCCCTATACCTTTATGGTTTGTATTCAGTGTTGTGTCTGACGTGGTACGCCCTCATGTTTGGTGCTGGCGCGCGACGGCTTAGTGCTTTGGCGTGTTTGGGAAAGACAGCAGCGTTGGTTGGGTGCGACCGGTTGTTTAGAGGAGTGAACCCACTTGCGGCAGATTTGGTTAAGCCATGCTTGGTTTGGTCTGTTTTGCTTACGGTTGTGAATCTCACTGTAGTCTCTCTTTGA

Coding sequence (CDS)

ATGGCTTCCACCGATCTAAAACACCGAAAAACCGATGACTCCACCCCCACTTCCACCGTCTCTGCCGATGACAACGACGCCTCCGCCCCGAAACCCTTCTGGGTCCCGTCGGCAAAGGTCGTAAACTGGGGGTCTTTGACTTCTAGCTTGTTAATGGGCGTCGCCGCCTGGCTGGTCTGGGCCGAGGGCGGATTCCACGCCAGACCCAACGCCCTATACCTTTATGGTTTGTATTCAGTGTTGTGTCTGACGTGGTACGCCCTCATGTTTGGTGCTGGCGCGCGACGGCTTAGTGCTTTGGCGTGTTTGGGAAAGACAGCAGCGTTGGTTGGGTGCGACCGGTTGTTTAGAGGAGTGAACCCACTTGCGGCAGATTTGGTTAAGCCATGCTTGGTTTGGTCTGTTTTGCTTACGGTTGTGAATCTCACTGTAGTCTCTCTTTGA

Protein sequence

MASTDLKHRKTDDSTPTSTVSADDNDASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVSL
Homology
[Close]
BLAST of CsaV3_7G029110 vs. NCBI nr
Match: XP_004136174.1 (PREDICTED: translocator protein homolog [Cucumis sativus] >KGN44921.1 hypothetical protein Csa_7G396370 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 3.6e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 27  ASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWY 86
           ASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWY
Sbjct: 71  ASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWY 130

Query: 87  ALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVS 146
           ALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVS
Sbjct: 131 ALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVS 190

Query: 147 L 148
           L
Sbjct: 191 L 191


HSP 2 Score: 52.4 bits (124), Expect = 1.6e-03
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1  MASTDLKHRKTDDSTPTSTVSADDNDAS 29
          MASTDLKHRKTDDSTPTSTVSADDND +
Sbjct: 1  MASTDLKHRKTDDSTPTSTVSADDNDGT 28

[Close]
BLAST of CsaV3_7G029110 vs. NCBI nr
Match: XP_022992488.1 (translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 192.6 bits (488), Expect = 9.6e-46
Identity = 90/120 (75.00%), Postives = 106/120 (88.33%), Query Frame = 0 

Query: 28  SAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWYA 87
           SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF A+PNALYLY LY VLC+ WY 
Sbjct: 69  SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYLVLCMAWYG 128

Query: 88  LMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVSL 147
           L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV LT+V+LT+VS+
Sbjct: 129 LVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTIVSLTMVSV 188

[Close]
BLAST of CsaV3_7G029110 vs. NCBI nr
Match: XP_022953735.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 90/120 (75.00%), Postives = 106/120 (88.33%), Query Frame = 0 

Query: 28  SAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWYA 87
           SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF ARPNALYLY LY VLC+ W+ 
Sbjct: 69  SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYTLYLVLCMAWHG 128

Query: 88  LMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVSL 147
           L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV LT+V+LT+VS+
Sbjct: 129 LVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVFLTIVSLTMVSV 188

[Close]
BLAST of CsaV3_7G029110 vs. NCBI nr
Match: XP_023548365.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 89/120 (74.17%), Postives = 106/120 (88.33%), Query Frame = 0 

Query: 28  SAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWYA 87
           SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF A+PNA+YLY LY VLC+ WY 
Sbjct: 68  SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNAVYLYTLYLVLCMAWYG 127

Query: 88  LMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVSL 147
           L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV LT+V+LT+VS+
Sbjct: 128 LVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTIVSLTMVSV 187

[Close]
BLAST of CsaV3_7G029110 vs. NCBI nr
Match: XP_022151009.1 (translocator protein homolog [Momordica charantia])

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 90/119 (75.63%), Postives = 100/119 (84.03%), Query Frame = 0 

Query: 28  SAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWYA 87
           S+PKPFW PSA  VN GS  SSLLMG A WLVWA+GGFH+ PNALYLY LY +LC TWY 
Sbjct: 65  SSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYTLYVLLCFTWYG 124

Query: 88  LMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVS 147
           L+ GAGA RL+A+ACL KTAALVGCDRLFR VNP+AADLVKPCL WSV LTVVNLT+V+
Sbjct: 125 LLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVFLTVVNLTMVA 183

[Close]
BLAST of CsaV3_7G029110 vs. TAIR10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related)

HSP 1 Score: 105.1 bits (261), Expect = 3.7e-23
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 0 

Query: 21  SADDNDASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSV 80
           ++D     A    W+P   +++   L SS LMG+AAWLVW +GGFH +PNALYLY    +
Sbjct: 70  TSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFL 129

Query: 81  LCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVV 140
           LCL W  + F  G+        LG++AAL GC + F  ++P+A +LVKPCL W+  +  V
Sbjct: 130 LCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

Query: 141 NL 143
           N+
Sbjct: 190 NV 191

[Close]
BLAST of CsaV3_7G029110 vs. Swiss-Prot
Match: sp|O82245|TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.6e-22
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 0 

Query: 21  SADDNDASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSV 80
           ++D     A    W+P   +++   L SS LMG+AAWLVW +GGFH +PNALYLY    +
Sbjct: 70  TSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNALYLYLAQFL 129

Query: 81  LCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVV 140
           LCL W  + F  G+        LG++AAL GC + F  ++P+A +LVKPCL W+  +  V
Sbjct: 130 LCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCLAWAAFVAAV 189

Query: 141 NL 143
           N+
Sbjct: 190 NV 191

[Close]
BLAST of CsaV3_7G029110 vs. TrEMBL
Match: tr|A0A0A0KAU9|A0A0A0KAU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.4e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 27  ASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWY 86
           ASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWY
Sbjct: 71  ASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWY 130

Query: 87  ALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVS 146
           ALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVS
Sbjct: 131 ALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVS 190

Query: 147 L 148
           L
Sbjct: 191 L 191


HSP 2 Score: 52.4 bits (124), Expect = 1.0e-03
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1  MASTDLKHRKTDDSTPTSTVSADDNDAS 29
          MASTDLKHRKTDDSTPTSTVSADDND +
Sbjct: 1  MASTDLKHRKTDDSTPTSTVSADDNDGT 28

[Close]
BLAST of CsaV3_7G029110 vs. TrEMBL
Match: tr|A0A022S1P1|A0A022S1P1_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a021287mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.7e-25
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = 0 

Query: 30  PKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWYALM 89
           PKPF+ P    ++   L ++   G++AWLVWAEGGFH +P AL LY    VL L WY ++
Sbjct: 47  PKPFYFPPLWALHLACLATAFFSGLSAWLVWAEGGFHRQPTALMLYLGQLVLGLGWYPIV 106

Query: 90  FGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVS 147
           FGAGA R+  + C      LVGC R+FR +NP+A DLVKPCL W+VLL +VN+ +VS
Sbjct: 107 FGAGATRVGLVICGALFGVLVGCVRMFRNMNPIAGDLVKPCLAWAVLLALVNVRLVS 163

[Close]
BLAST of CsaV3_7G029110 vs. TrEMBL
Match: tr|A0A068U4L8|A0A068U4L8_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00015906001 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 59/119 (49.58%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 27  ASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWY 86
           A+  KPFW P    ++   L S+ LMG++AWLVWAEGGFH  P AL LY     L L W 
Sbjct: 73  ATMKKPFWSPPLWALHSACLASAFLMGLSAWLVWAEGGFHRNPTALLLYLGQLSLSLAWD 132

Query: 87  ALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVV 146
            ++F AGA R+  + C+    ALVGC R+FR +NP+AADLVKPCL+W+++L++ N+ +V
Sbjct: 133 PIVFQAGASRMGLVLCVALFGALVGCARIFRTMNPIAADLVKPCLLWALILSLANIVLV 191

[Close]
BLAST of CsaV3_7G029110 vs. TrEMBL
Match: tr|A0A1R3IH26|A0A1R3IH26_9ROSI (TspO/MBR-related protein OS=Corchorus olitorius OX=93759 GN=COLO4_23373 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 63/123 (51.22%), Postives = 80/123 (65.04%), Query Frame = 0 

Query: 25  NDASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLT 84
           N ++ PKPFW P A +++   + SS LMG++AWLVWAEGGFHARP AL LY     L L 
Sbjct: 70  NYSALPKPFWFPPAWLLHITCMASSFLMGLSAWLVWAEGGFHARPTALSLYMAQLGLSLL 129

Query: 85  WYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTV 144
           W  ++F   A  +  + CL    ALVGC R FR VNP+A +LVKPCL W+  L +VNL +
Sbjct: 130 WTPIVFWLRASWVGLVVCLAAFGALVGCWRDFRAVNPIAGNLVKPCLAWAAFLAIVNLKL 189

Query: 145 VSL 148
           V L
Sbjct: 190 VFL 192

[Close]
BLAST of CsaV3_7G029110 vs. TrEMBL
Match: tr|A0A061DQD9|A0A061DQD9_THECC (TSPO(Outer membrane tryptophan-rich sensory protein)-related OS=Theobroma cacao OX=3641 GN=TCM_004622 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.0e-24
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 0 

Query: 30  PKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYGLYSVLCLTWYALM 89
           PKPFW P   +++   + SS LMG++AWLVWAEGGFHARP AL L+     L L W  ++
Sbjct: 79  PKPFWFPPLWLIHITCMASSFLMGLSAWLVWAEGGFHARPRALSLFMAQLGLSLAWLPIV 138

Query: 90  FGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVLLTVVNLTVVSL 148
           F  GA  +  +  L    ALVGC R FR VNP+A DLVKPCL W+  L +VNL +V L
Sbjct: 139 FWVGASWVGLVVRLAVFGALVGCSRDFREVNPIAGDLVKPCLAWAAFLAIVNLKLVFL 196

The following BLAST results are available for this feature:
BLAST of CsaV3_7G029110 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136174.13.6e-61100.00PREDICTED: translocator protein homolog [Cucumis sativus] >KGN44921.1 hypothetic... [more]
XP_022992488.19.6e-4675.00translocator protein homolog [Cucurbita maxima][more]
XP_022953735.11.3e-4575.00translocator protein homolog [Cucurbita moschata][more]
XP_023548365.12.1e-4574.17translocator protein homolog [Cucurbita pepo subsp. pepo][more]
XP_022151009.11.8e-4475.63translocator protein homolog [Momordica charantia][more]
BLAST of CsaV3_7G029110 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47770.13.7e-2342.62TSPO(outer membrane tryptophan-rich sensory protein)-related[more]
BLAST of CsaV3_7G029110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O82245|TSPO_ARATH6.6e-2242.62Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1[more]
BLAST of CsaV3_7G029110 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KAU9|A0A0A0KAU9_CUCSA2.4e-61100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=4 SV=1[more]
tr|A0A022S1P1|A0A022S1P1_ERYGU4.7e-2551.28Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a021287mg PE... [more]
tr|A0A068U4L8|A0A068U4L8_COFCA1.1e-2449.58Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00015906001 PE=4 ... [more]
tr|A0A1R3IH26|A0A1R3IH26_9ROSI1.1e-2451.22TspO/MBR-related protein OS=Corchorus olitorius OX=93759 GN=COLO4_23373 PE=4 SV=... [more]
tr|A0A061DQD9|A0A061DQD9_THECC4.0e-2451.69TSPO(Outer membrane tryptophan-rich sensory protein)-related OS=Theobroma cacao ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004307TspO_MBR
IPR038330TspO/MBR-related_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G029110.1CsaV3_7G029110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038330TspO/MBR-related superfamilyGENE3DG3DSA:1.20.1260.100coord: 15..147
e-value: 1.0E-18
score: 69.3
IPR004307TspO/MBR-related proteinPIRSFPIRSF005859PBRcoord: 15..147
e-value: 5.4E-25
score: 85.7
IPR004307TspO/MBR-related proteinPFAMPF03073TspO_MBRcoord: 27..145
e-value: 2.4E-17
score: 63.1
IPR004307TspO/MBR-related proteinPANTHERPTHR10057PERIPHERAL-TYPE BENZODIAZEPINE RECEPTORcoord: 30..145
IPR004307TspO/MBR-related proteinCDDcd15904TSPO_MBRcoord: 31..145
e-value: 4.32773E-23
score: 88.3228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR10057:SF6SUBFAMILY NOT NAMEDcoord: 30..145

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G029110CSPI07G17310Wild cucumber (PI 183967)cpicucB414
CsaV3_7G029110Cucsa.205710Cucumber (Gy14) v1cgycucB330
CsaV3_7G029110CmaCh17G011010Cucurbita maxima (Rimu)cmacucB0462
CsaV3_7G029110CmoCh17G010760Cucurbita moschata (Rifu)cmocucB0455
CsaV3_7G029110Cp4.1LG12g05440Cucurbita pepo (Zucchini)cpecucB0188
CsaV3_7G029110CsGy7G015750Cucumber (Gy14) v2cgybcucB347
CsaV3_7G029110Carg07183Silver-seed gourdcarcucB0128
CsaV3_7G029110Cla015051Watermelon (97103) v1cucwmB593
CsaV3_7G029110MELO3C016017Melon (DHL92) v3.5.1cucmeB550
CsaV3_7G029110ClCG09G006030Watermelon (Charleston Gray)cucwcgB548
CsaV3_7G029110Lsi02G023870Bottle gourd (USVL1VR-Ls)cuclsiB538
CsaV3_7G029110MELO3C016017.2Melon (DHL92) v3.6.1cucmedB538
CsaV3_7G029110Cla97C09G168590Watermelon (97103) v2cucwmbB594
CsaV3_7G029110Bhi09G000700Wax gourdcucwgoB716
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_7G029110Watermelon (97103) v2cucwmbB536
CsaV3_7G029110Wax gourdcucwgoB672
CsaV3_7G029110Cucumber (Chinese Long) v3cuccucB185
CsaV3_7G029110Cucumber (Gy14) v2cgybcucB195
CsaV3_7G029110Cucumber (Gy14) v1cgycucB108
CsaV3_7G029110Cucurbita maxima (Rimu)cmacucB1084
CsaV3_7G029110Cucurbita moschata (Rifu)cmocucB1066
CsaV3_7G029110Cucurbita pepo (Zucchini)cpecucB0422
CsaV3_7G029110Wild cucumber (PI 183967)cpicucB246
CsaV3_7G029110Bottle gourd (USVL1VR-Ls)cuclsiB550
CsaV3_7G029110Melon (DHL92) v3.5.1cucmeB584
CsaV3_7G029110Melon (DHL92) v3.6.1cucmedB571
CsaV3_7G029110Watermelon (Charleston Gray)cucwcgB555
CsaV3_7G029110Watermelon (97103) v1cucwmB601