Cla021838 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021838
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 6742059 .. 6742265 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAAGAGATTATGGGAATGAATACGAAGGTAATTATTTTGATGAAAGTGGTGAAATTAAAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGCAGATGGGTAGCTGAGCCCGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTATGAAGCTCGTGTTTCTGACCCAGAACGCCAAACCTTTTCTCTTTAA

mRNA sequence

ATGGGAGGAAGAGATTATGGGAATGAATACGAAGGTAATTATTTTGATGAAAGTGGTGAAATTAAAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGCAGATGGGTAGCTGAGCCCGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTATGAAGCTCGTGTTTCTGACCCAGAACGCCAAACCTTTTCTCTTTAA

Coding sequence (CDS)

ATGGGAGGAAGAGATTATGGGAATGAATACGAAGGTAATTATTTTGATGAAAGTGGTGAAATTAAAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGCAGATGGGTAGCTGAGCCCGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTATGAAGCTCGTGTTTCTGACCCAGAACGCCAAACCTTTTCTCTTTAA

Protein sequence

MGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTFSL

Homology

[Close]

BLAST of Cla021838 vs. TrEMBL
Match: A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 6.7e-29
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MGGRDYGNEYEGNYF-DESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGN+YEG+YF D+SGEI+RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTFSL 69
          DPERQT SL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of Cla021838 vs. TrEMBL
Match: E5GC50_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.8e-27
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60
          MGGRDYGN+Y G + D+SGE++RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 61 PERQTFSL 69
          PERQT SL
Sbjct: 61 PERQTLSL 68

[Close]

BLAST of Cla021838 vs. TrEMBL
Match: W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-13
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 4  RDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPER 63
          RD  N  EG Y      I+RR+ PSDEDRG  W+AEPGIDRKASAFIARFYE+RVSDPER
Sbjct: 27 RDDTNSEEGVY------IRRRICPSDEDRGG-WIAEPGIDRKASAFIARFYESRVSDPER 84

Query: 64 QTFSL 69
          QT ++
Sbjct: 87 QTLAV 84

[Close]

BLAST of Cla021838 vs. TrEMBL
Match: A0A067E1Z2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038144mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-12
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 15 FDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPER 64
          +D+ G   RR+WPSDED+G+ WVAEPGIDRKASAFIA+F+EAR+S+ ER
Sbjct: 30 WDDVGCTARRIWPSDEDKGAYWVAEPGIDRKASAFIAKFHEARISESER 78

[Close]

BLAST of Cla021838 vs. TrEMBL
Match: V4S2I2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013220mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-12
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 1


Query: 15 FDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPER 64
          +D+ G   RR+WPSDED+G+ WVAEPGIDRKASAFIA+F+EAR+S+ ER
Sbjct: 30 WDDVGCTARRIWPSDEDKGAYWVAEPGIDRKASAFIAKFHEARISESER 78

[Close]

BLAST of Cla021838 vs. NCBI nr
Match: gi|700202083|gb|KGN57216.1| (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 9.6e-29
Identity = 63/69 (91.30%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MGGRDYGNEYEGNYF-DESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGN+YEG+YF D+SGEI+RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTFSL 69
          DPERQT SL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of Cla021838 vs. NCBI nr
Match: gi|659077069|ref|XP_008439016.1| (PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60
          MGGRDYGN+Y G + D+SGE++RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD
Sbjct: 24 MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 83

Query: 61 PERQTFSL 69
          PERQT SL
Sbjct: 84 PERQTLSL 91

[Close]

BLAST of Cla021838 vs. NCBI nr
Match: gi|307136210|gb|ADN34048.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 128.6 bits (322), Expect = 4.0e-27
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 1


Query: 1  MGGRDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60
          MGGRDYGN+Y G + D+SGE++RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 61 PERQTFSL 69
          PERQT SL
Sbjct: 61 PERQTLSL 68

[Close]

BLAST of Cla021838 vs. NCBI nr
Match: gi|703107460|ref|XP_010098752.1| (hypothetical protein L484_026133 [Morus notabilis])

HSP 1 Score: 83.2 bits (204), Expect = 1.9e-13
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1


Query: 4  RDYGNEYEGNYFDESGEIKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPER 63
          RD  N  EG Y      I+RR+ PSDEDRG  W+AEPGIDRKASAFIARFYE+RVSDPER
Sbjct: 27 RDDTNSEEGVY------IRRRICPSDEDRGG-WIAEPGIDRKASAFIARFYESRVSDPER 84

Query: 64 QTFSL 69
          QT ++
Sbjct: 87 QTLAV 84

[Close]

BLAST of Cla021838 vs. NCBI nr
Match: gi|657995939|ref|XP_008390328.1| (PREDICTED: uncharacterized protein LOC103452598 [Malus domestica])

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-12
Identity = 39/62 (62.90%), Postives = 48/62 (77.42%), Query Frame = 1


Query: 7  GNEYEGNYFDESGE-IKRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQT 66
          G+  +  Y D+ G  ++RRM PSDEDRG  W AEPGIDRKA+AFI+RFY +RVSDPE QT
Sbjct: 21 GSRDDAYYSDDGGVYVRRRMCPSDEDRGG-WTAEPGIDRKATAFISRFYASRVSDPECQT 80

Query: 67 FS 68
          F+
Sbjct: 81 FA 81

The following BLAST results are available for this feature:

BLAST of Cla021838 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAW1_CUCSA	6.7e-29	91.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1	[more]
E5GC50_CUCME	2.8e-27	86.76	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RIP1_9ROSA	1.4e-13	67.69	Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1	[more]
A0A067E1Z2_CITSI	7.4e-12	69.39	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038144mg PE=4 SV=1	[more]
V4S2I2_9ROSI	7.4e-12	69.39	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013220mg PE=4 SV=1	[more]

BLAST of Cla021838 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202083\|gb\|KGN57216.1\|	9.6e-29	91.30	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
gi\|659077069\|ref\|XP_008439016.1\|	4.0e-27	86.76	PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo]	[more]
gi\|307136210\|gb\|ADN34048.1\|	4.0e-27	86.76	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|703107460\|ref\|XP_010098752.1\|	1.9e-13	67.69	hypothetical protein L484_026133 [Morus notabilis]	[more]
gi\|657995939\|ref\|XP_008390328.1\|	8.2e-12	62.90	PREDICTED: uncharacterized protein LOC103452598 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU63092	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021838	Cla021838.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU63092	WMU63092	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 23..68 score: 2.2
None	No IPR available	PANTHER	PTHR33511:SF3	SUBFAMILY NOT NAMED	coord: 23..68 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021838	Cla97C05G088610	Watermelon (97103) v2	wmwmbB206
Cla021838	Csa3G171730	Cucumber (Chinese Long) v2	cuwmB233
Cla021838	MELO3C006762	Melon (DHL92) v3.5.1	mewmB461
Cla021838	CSPI03G15470	Wild cucumber (PI 183967)	cpiwmB231
Cla021838	CmaCh14G015500	Cucurbita maxima (Rimu)	cmawmB242
Cla021838	CmaCh06G015950	Cucurbita maxima (Rimu)	cmawmB798
Cla021838	CmoCh14G015860	Cucurbita moschata (Rifu)	cmowmB231
Cla021838	CmoCh06G015900	Cucurbita moschata (Rifu)	cmowmB793
Cla021838	Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	cpewmB845
Cla021838	CsGy3G015530	Cucumber (Gy14) v2	cgybwmB217
Cla021838	MELO3C006762.2	Melon (DHL92) v3.6.1	medwmB447
Cla021838	Carg15520	Silver-seed gourd	carwmB0692
Cla021838	CsaV3_3G015630	Cucumber (Chinese Long) v3	cucwmB239

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021838	Wax gourd	wgowmB201
Cla021838	Cucumber (Gy14) v1	cgywmB479
Cla021838	Watermelon (Charleston Gray)	wcgwmB286
Cla021838	Cucurbita pepo (Zucchini)	cpewmB613
Cla021838	Bottle gourd (USVL1VR-Ls)	lsiwmB366
Cla021838	Silver-seed gourd	carwmB0269