MELO3C006762 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006762
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein transport protein sec23
Location	chr6 : 5769051 .. 5769515 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTACCTTTCATTCCTTCATCTCTCTCTTGAAAAGAGAGAAAAAGAAAAAAAATGCTTAGGGAAGCTGAGATCTAGAAAGGAAAAGAAAAGGGCACCATTATTATTATTTGAAGAAGGGGGAAGTTTTTATTAGAAGTGCTTTCTTCTCAAAGAAAATATATATATTGATATTGTTGTTGTCATTATATGGGGGGAAGATCAAAGTCATTGAAGTGCTTTTCATTTTGTGGCATATTGAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGACTATGGAGGTTATTTTGAAGATCAAAGTGGTGAAATGAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

mRNA sequence

AAATTACCTTTCATTCCTTCATCTCTCTCTTGAAAAGAGAGAAAAAGAAAAAAAATGCTTAGGGAAGCTGAGATCTAGAAAGGAAAAGAAAAGGGCACCATTATTATTATTTGAAGAAGGGGGAAGTTTTTATTAGAAGTGCTTTCTTCTCAAAGAAAATATATATATTGATATTGTTGTTGTCATTATATGGGGGGAAGATCAAAGTCATTGAAGTGCTTTTCATTTTGTGGCATATTGAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGACTATGGAGGTTATTTTGAAGATCAAAGTGGTGAAATGAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

Coding sequence (CDS)

ATGGGGGGAAGATCAAAGTCATTGAAGTGCTTTTCATTTTGTGGCATATTGAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGACTATGGAGGTTATTTTGAAGATCAAAGTGGTGAAATGAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

Protein sequence

MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTLSL*

Homology

[Close]

BLAST of MELO3C006762 vs. TrEMBL
Match: E5GC50_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 24 MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 83
          MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 84 PERQTLSL 92
          PERQTLSL
Sbjct: 61 PERQTLSL 68

[Close]

BLAST of MELO3C006762 vs. TrEMBL
Match: A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 24 MGGRDYGNDYGG-YFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 83
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 84 DPERQTLSL 92
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of MELO3C006762 vs. TrEMBL
Match: W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-16
Identity = 54/92 (58.70%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 1  MGGRSKSLKC-FSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRW 60
          MG + KS    FS C I  S CF    RD  N   G +      +RRR+ PSDEDRG  W
Sbjct: 1  MGRQGKSTSSLFSLCSIF-SACFSSSSRDDTNSEEGVY------IRRRICPSDEDRGG-W 60

Query: 61 VAEPGIDRKASAFIARFYEARVSDPERQTLSL 92
          +AEPGIDRKASAFIARFYE+RVSDPERQTL++
Sbjct: 61 IAEPGIDRKASAFIARFYESRVSDPERQTLAV 84

[Close]

BLAST of MELO3C006762 vs. TrEMBL
Match: B9HXC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00650g PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.8e-16
Identity = 56/95 (58.95%), Postives = 59/95 (62.11%), Query Frame = 1


Query: 1  MGGRS---KSLKC-FSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRG 60
          MGG S   KS  C FS   I KSCC+  G  D   D  GY+        RR  PSDED G
Sbjct: 1  MGGYSRQRKSSSCLFSIFSIFKSCCYSSGSDDMSED--GYYV-------RRACPSDED-G 60

Query: 61 SRWVAEPGIDRKASAFIARFYEARVSDPERQTLSL 92
           RWV EPGID KASAFIARFY  RVSDPERQTL+L
Sbjct: 61 RRWVGEPGIDGKASAFIARFYATRVSDPERQTLAL 85

[Close]

BLAST of MELO3C006762 vs. TrEMBL
Match: A0A067K878_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19109 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-14
Identity = 51/91 (56.04%), Postives = 59/91 (64.84%), Query Frame = 1


Query: 1  MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWV 60
          MG   KS  CFS   I K+CC   G  D   D G Y         RR++PSDED G RW+
Sbjct: 1  MGKLRKS--CFSMLNIFKACC-SHGSDDISED-GFYI--------RRIYPSDED-GRRWI 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTLSL 92
           +PGID +ASAFIARFYE+RVSDPERQTL+L
Sbjct: 61 GDPGIDGRASAFIARFYESRVSDPERQTLAL 78

[Close]

BLAST of MELO3C006762 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 4.5e-11
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1


Query: 46 RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTL 90
          R+ W SDED+   WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of MELO3C006762 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-11
Identity = 46/92 (50.00%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 1  MGG--RSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSR 60
          MGG  RS S K FS     K+       R +  +  G ++D  G  R+ M  SDED+   
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKT------RRSHRVEADGSWDD-FGYTRKAM-ASDEDK-RY 60

Query: 61 WVAEPGIDRKASAFIARFYEARVSDPERQTLS 91
          WVAEPGIDRKASAFIA+F+  RVS+ ERQTLS
Sbjct: 61 WVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of MELO3C006762 vs. TAIR10
Match: AT1G48325.1 (AT1G48325.1 Expressed protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.3e-06
Identity = 30/85 (35.29%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 1  MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWV 60
          MGG  +  K  S   ++KS  F    ++  N    + E++   +R R+  +D+D  S  +
Sbjct: 3  MGGHGRRRKSSSSFSVVKSL-FARCSKEKDN----WNEERMINVRPRIMTTDDDGCSWTI 62

Query: 61 AEPGIDRKASAFIARFYEARVSDPE 86
          AEP IDR+A+AFIA+F+E  + D E
Sbjct: 63 AEPCIDRRATAFIAKFHETPIQDTE 82

[Close]

BLAST of MELO3C006762 vs. NCBI nr
Match: gi|659077069|ref|XP_008439016.1| (PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-47
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWV 60
          MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWV
Sbjct: 1  MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWV 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTLSL 92
          AEPGIDRKASAFIARFYEARVSDPERQTLSL
Sbjct: 61 AEPGIDRKASAFIARFYEARVSDPERQTLSL 91

[Close]

BLAST of MELO3C006762 vs. NCBI nr
Match: gi|307136210|gb|ADN34048.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 24 MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 83
          MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 84 PERQTLSL 92
          PERQTLSL
Sbjct: 61 PERQTLSL 68

[Close]

BLAST of MELO3C006762 vs. NCBI nr
Match: gi|700202083|gb|KGN57216.1| (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 24 MGGRDYGNDYGG-YFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 83
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 84 DPERQTLSL 92
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of MELO3C006762 vs. NCBI nr
Match: gi|703107460|ref|XP_010098752.1| (hypothetical protein L484_026133 [Morus notabilis])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 54/92 (58.70%), Postives = 62/92 (67.39%), Query Frame = 1


Query: 1  MGGRSKSLKC-FSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRW 60
          MG + KS    FS C I  S CF    RD  N   G +      +RRR+ PSDEDRG  W
Sbjct: 1  MGRQGKSTSSLFSLCSIF-SACFSSSSRDDTNSEEGVY------IRRRICPSDEDRGG-W 60

Query: 61 VAEPGIDRKASAFIARFYEARVSDPERQTLSL 92
          +AEPGIDRKASAFIARFYE+RVSDPERQTL++
Sbjct: 61 IAEPGIDRKASAFIARFYESRVSDPERQTLAV 84

[Close]

BLAST of MELO3C006762 vs. NCBI nr
Match: gi|224106998|ref|XP_002314338.1| (hypothetical protein POPTR_0010s00650g [Populus trichocarpa])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 56/95 (58.95%), Postives = 59/95 (62.11%), Query Frame = 1


Query: 1  MGGRS---KSLKC-FSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRG 60
          MGG S   KS  C FS   I KSCC+  G  D   D  GY+        RR  PSDED G
Sbjct: 1  MGGYSRQRKSSSCLFSIFSIFKSCCYSSGSDDMSED--GYYV-------RRACPSDED-G 60

Query: 61 SRWVAEPGIDRKASAFIARFYEARVSDPERQTLSL 92
           RWV EPGID KASAFIARFY  RVSDPERQTL+L
Sbjct: 61 RRWVGEPGIDGKASAFIARFYATRVSDPERQTLAL 85

The following BLAST results are available for this feature:

BLAST of MELO3C006762 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC50_CUCME	1.8e-32	100.00	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LAW1_CUCSA	1.1e-29	95.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1	[more]
W9RIP1_9ROSA	1.0e-16	58.70	Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1	[more]
B9HXC1_POPTR	8.8e-16	58.95	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00650g PE=4 SV=1	[more]
A0A067K878_JATCU	3.7e-14	56.04	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19109 PE=4 SV=1	[more]

BLAST of MELO3C006762 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26620.1	4.5e-11	70.45	unknown protein	[more]
AT3G05858.1	5.8e-11	50.00	unknown protein	[more]
AT1G48325.1	4.3e-06	35.29	Expressed protein	[more]

BLAST of MELO3C006762 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077069\|ref\|XP_008439016.1\|	1.2e-47	100.00	PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo]	[more]
gi\|307136210\|gb\|ADN34048.1\|	2.5e-32	100.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700202083\|gb\|KGN57216.1\|	1.5e-29	95.65	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
gi\|703107460\|ref\|XP_010098752.1\|	1.5e-16	58.70	hypothetical protein L484_026133 [Morus notabilis]	[more]
gi\|224106998\|ref\|XP_002314338.1\|	1.3e-15	58.95	hypothetical protein POPTR_0010s00650g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU60404	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006762T1	MELO3C006762T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU60404	MU60404	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..90 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006762	Csa3G171730	Cucumber (Chinese Long) v2	cumeB236
MELO3C006762	Cla021838	Watermelon (97103) v1	mewmB461
MELO3C006762	Cla97C05G088610	Watermelon (97103) v2	mewmbB434
MELO3C006762	CSPI03G15470	Wild cucumber (PI 183967)	cpimeB230
MELO3C006762	CmaCh06G015950	Cucurbita maxima (Rimu)	cmameB763
MELO3C006762	CmaCh14G015500	Cucurbita maxima (Rimu)	cmameB242
MELO3C006762	CmoCh06G015900	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006762	CmoCh14G015860	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006762	Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006762	CsGy3G015530	Cucumber (Gy14) v2	cgybmeB200
MELO3C006762	Carg15520	Silver-seed gourd	carmeB0693
MELO3C006762	CsaV3_3G015630	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006762	Silver-seed gourd	carmeB0280
MELO3C006762	Wax gourd	mewgoB529
MELO3C006762	Cucumber (Gy14) v1	cgymeB439
MELO3C006762	Watermelon (Charleston Gray)	mewcgB427
MELO3C006762	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006762	Bottle gourd (USVL1VR-Ls)	lsimeB379