Csa3G171730 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G171730
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ribosomal protein S12; contains IPR008480 (Protein of unknown function DUF761, plant)
Location	Chr3 : 11449889 .. 11450098 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAAGAGATTATGGGAATGACTATGAAGGTCATTATTTTGAAGATCAAAGTGGTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

mRNA sequence

ATGGGAGGAAGAGATTATGGGAATGACTATGAAGGTCATTATTTTGAAGATCAAAGTGGTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

Coding sequence (CDS)

ATGGGAGGAAGAGATTATGGGAATGACTATGAAGGTCATTATTTTGAAGATCAAAGTGGTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

Protein sequence

MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTLSL*

Homology

[Close]

BLAST of Csa3G171730 vs. TrEMBL
Match: A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 2.7e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of Csa3G171730 vs. TrEMBL
Match: E5GC50_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 8.1e-30
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYGG-YFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 61 DPERQTLSL 68

[Close]

BLAST of Csa3G171730 vs. TrEMBL
Match: W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.8e-14
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 4  RDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPE 63
          RD  N  EG Y       IRRR+ PSDEDRG  W+AEPGIDRKASAFIARFYE+RVSDPE
Sbjct: 27 RDDTNSEEGVY-------IRRRICPSDEDRGG-WIAEPGIDRKASAFIARFYESRVSDPE 84

Query: 64 RQTLSL 70
          RQTL++
Sbjct: 87 RQTLAV 84

[Close]

BLAST of Csa3G171730 vs. TrEMBL
Match: A0A067E1Z2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038144mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1


Query: 17 DQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPER 65
          D  G   RR+WPSDED+G+ WVAEPGIDRKASAFIA+F+EAR+S+ ER
Sbjct: 31 DDVGCTARRIWPSDEDKGAYWVAEPGIDRKASAFIAKFHEARISESER 78

[Close]

BLAST of Csa3G171730 vs. TrEMBL
Match: V4S2I2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013220mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1


Query: 17 DQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPER 65
          D  G   RR+WPSDED+G+ WVAEPGIDRKASAFIA+F+EAR+S+ ER
Sbjct: 31 DDVGCTARRIWPSDEDKGAYWVAEPGIDRKASAFIAKFHEARISESER 78

[Close]

BLAST of Csa3G171730 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-11
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1


Query: 24 RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTL 68
          R+ W SDED+   WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of Csa3G171730 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-10
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 17 DQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTLS 69
          D  G  R+ M  SDED+   WVAEPGIDRKASAFIA+F+  RVS+ ERQTLS
Sbjct: 34 DDFGYTRKAM-ASDEDK-RYWVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Csa3G171730 vs. NCBI nr
Match: gi|700202083|gb|KGN57216.1| (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of Csa3G171730 vs. NCBI nr
Match: gi|659077069|ref|XP_008439016.1| (PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 24 MGGRDYGNDYGG-YFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 83

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 84 DPERQTLSL 91

[Close]

BLAST of Csa3G171730 vs. NCBI nr
Match: gi|307136210|gb|ADN34048.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYGG-YFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 61 DPERQTLSL 68

[Close]

BLAST of Csa3G171730 vs. NCBI nr
Match: gi|703107460|ref|XP_010098752.1| (hypothetical protein L484_026133 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-14
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 4  RDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPE 63
          RD  N  EG Y       IRRR+ PSDEDRG  W+AEPGIDRKASAFIARFYE+RVSDPE
Sbjct: 27 RDDTNSEEGVY-------IRRRICPSDEDRGG-WIAEPGIDRKASAFIARFYESRVSDPE 84

Query: 64 RQTLSL 70
          RQTL++
Sbjct: 87 RQTLAV 84

[Close]

BLAST of Csa3G171730 vs. NCBI nr
Match: gi|657995939|ref|XP_008390328.1| (PREDICTED: uncharacterized protein LOC103452598 [Malus domestica])

HSP 1 Score: 77.8 bits (190), Expect = 8.4e-12
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 7  GNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQT 66
          G+  + +Y +D    +RRRM PSDEDRG  W AEPGIDRKA+AFI+RFY +RVSDPE QT
Sbjct: 21 GSRDDAYYSDDGGVYVRRRMCPSDEDRGG-WTAEPGIDRKATAFISRFYASRVSDPECQT 80

Query: 67 LS 69
           +
Sbjct: 81 FA 81

The following BLAST results are available for this feature:

BLAST of Csa3G171730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAW1_CUCSA	2.7e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1	[more]
E5GC50_CUCME	8.1e-30	95.65	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RIP1_9ROSA	2.8e-14	69.70	Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1	[more]
A0A067E1Z2_CITSI	1.7e-11	70.83	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038144mg PE=4 SV=1	[more]
V4S2I2_9ROSI	1.7e-11	70.83	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013220mg PE=4 SV=1	[more]

BLAST of Csa3G171730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26620.1	3.4e-11	70.45	unknown protein	[more]
AT3G05858.1	2.9e-10	65.38	unknown protein	[more]

BLAST of Csa3G171730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202083\|gb\|KGN57216.1\|	3.9e-33	100.00	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
gi\|659077069\|ref\|XP_008439016.1\|	1.2e-29	95.65	PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo]	[more]
gi\|307136210\|gb\|ADN34048.1\|	1.2e-29	95.65	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|703107460\|ref\|XP_010098752.1\|	4.0e-14	69.70	hypothetical protein L484_026133 [Morus notabilis]	[more]
gi\|657995939\|ref\|XP_008390328.1\|	8.4e-12	61.29	PREDICTED: uncharacterized protein LOC103452598 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU092042	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G171730.1	Csa3G171730.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU092042	CU092042	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 2..68 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G171730	Cla021838	Watermelon (97103) v1	cuwmB233
Csa3G171730	MELO3C006762	Melon (DHL92) v3.5.1	cumeB236
Csa3G171730	MELO3C006762.2	Melon (DHL92) v3.6.1	cumedB223
Csa3G171730	Cla97C05G088610	Watermelon (97103) v2	cuwmbB204
Csa3G171730	CSPI03G15470	Wild cucumber (PI 183967)	cpicuB120
Csa3G171730	CmaCh14G015500	Cucurbita maxima (Rimu)	cmacuB253
Csa3G171730	CmaCh06G015950	Cucurbita maxima (Rimu)	cmacuB814
Csa3G171730	CmoCh06G015900	Cucurbita moschata (Rifu)	cmocuB806
Csa3G171730	CmoCh14G015860	Cucurbita moschata (Rifu)	cmocuB239
Csa3G171730	Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	cpecuB859
Csa3G171730	CsGy3G015530	Cucumber (Gy14) v2	cgybcuB109
Csa3G171730	Carg15520	Silver-seed gourd	carcuB0714

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G171730	Silver-seed gourd	carcuB0306
Csa3G171730	Wax gourd	cuwgoB269
Csa3G171730	Cucumber (Gy14) v1	cgycuB366
Csa3G171730	Watermelon (Charleston Gray)	cuwcgB222
Csa3G171730	Cucurbita pepo (Zucchini)	cpecuB609
Csa3G171730	Bottle gourd (USVL1VR-Ls)	culsiB210