MELO3C006762.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006762.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Ribosomal protein S12
Location	chr06 : 5768284 .. 5768748 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTACCTTTCATTCCTTCATCTCTCTCTTGAAAAGAGAGAAAAAGAAAAAAAATGCTTAGGGAAGCTGAGATCTAGAAAGGAAAAGAAAAGGGCACCATTATTATTATTTGAAGAAGGGGGAAGTTTTTATTAGAAGTGCTTTCTTCTCAAAGAAAATATATATATTGATATTGTTGTTGTCATTATATGGGGGGAAGATCAAAGTCATTGAAGTGCTTTTCATTTTGTGGCATATTGAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGACTATGGAGGTTATTTTGAAGATCAAAGTGGTGAAATGAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

mRNA sequence

AAATTACCTTTCATTCCTTCATCTCTCTCTTGAAAAGAGAGAAAAAGAAAAAAAATGCTTAGGGAAGCTGAGATCTAGAAAGGAAAAGAAAAGGGCACCATTATTATTATTTGAAGAAGGGGGAAGTTTTTATTAGAAGTGCTTTCTTCTCAAAGAAAATATATATATTGATATTGTTGTTGTCATTATATGGGGGGAAGATCAAAGTCATTGAAGTGCTTTTCATTTTGTGGCATATTGAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGACTATGGAGGTTATTTTGAAGATCAAAGTGGTGAAATGAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

Coding sequence (CDS)

ATGGGGGGAAGATCAAAGTCATTGAAGTGCTTTTCATTTTGTGGCATATTGAAAAGCTGTTGTTTCCCAATGGGAGGAAGAGATTATGGGAATGACTATGGAGGTTATTTTGAAGATCAAAGTGGTGAAATGAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

Protein sequence

MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTLSL

Homology

[Close]

BLAST of MELO3C006762.2 vs. NCBI nr
Match: ADN34048.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 145.6 bits (366), Expect = 8.3e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 24 MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 83
          MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 84 PERQTLSL 92
          PERQTLSL
Sbjct: 61 PERQTLSL 68

[Close]

BLAST of MELO3C006762.2 vs. NCBI nr
Match: XP_022138231.1 (uncharacterized protein LOC111009454 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 5.9e-30
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 1  MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWV 60
          MGGR KS KCFS C ILKSCCFPMGGR   ++ GGY+ D+S E+RRRMWPSDEDRG RWV
Sbjct: 1  MGGR-KSSKCFSICSILKSCCFPMGGR--SSEDGGYW-DESAEIRRRMWPSDEDRG-RWV 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTLSL 92
          AEPGIDRKASAFIARFYEARVSDP+RQT ++
Sbjct: 61 AEPGIDRKASAFIARFYEARVSDPQRQTFAV 86

[Close]

BLAST of MELO3C006762.2 vs. NCBI nr
Match: XP_022935735.1 (uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 uncharacterized protein LOC111800720 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.4 bits (350), Expect = 5.9e-30
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWV 60
          MGGRSKS+KCFS C I KSCCF  GGRD G      + D+SGE+RRRMWPSDED  +RWV
Sbjct: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEG------YWDESGEIRRRMWPSDED--TRWV 60

Query: 61 AEPGIDRKASAFIARFYEARVSDPERQTLSL 92
          AEPGIDRKASAFIARFY+ARVSDPERQTL++
Sbjct: 61 AEPGIDRKASAFIARFYDARVSDPERQTLAV 83

[Close]

BLAST of MELO3C006762.2 vs. NCBI nr
Match: KGN57216.1 (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 5.0e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 24 MGGRDYGNDY-GGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 83
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 84 DPERQTLSL 92
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of MELO3C006762.2 vs. NCBI nr
Match: XP_024922636.1 (uncharacterized protein LOC112488971 [Ziziphus jujuba])

HSP 1 Score: 94.7 bits (234), Expect = 1.7e-16
Identity = 51/89 (57.30%), Postives = 61/89 (68.54%), Query Frame = 0


Query: 3  GRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAE 62
          G+ KS   FSFC I K+ CF  G  +      GY+      +RRR++ SDEDRG  W AE
Sbjct: 2  GKGKSASLFSFCNIFKA-CFSSGSNEDAYSEEGYY------IRRRIYASDEDRGG-WTAE 61

Query: 63 PGIDRKASAFIARFYEARVSDPERQTLSL 92
          PGIDRKASAFIARFYE+RVSD ERQTL++
Sbjct: 62 PGIDRKASAFIARFYESRVSDSERQTLAV 82

[Close]

BLAST of MELO3C006762.2 vs. TAIR10
Match: AT5G26620.1 (unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 4.4e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 46 RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTL 90
          R+ W SDED+   WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of MELO3C006762.2 vs. TAIR10
Match: AT3G05858.1 (unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 5.8e-11
Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 1  MGG--RSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSR 60
          MGG  RS S K FS     K+       R +  +  G ++D  G  R+ M  SDED+   
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKT------RRSHRVEADGSWDD-FGYTRKAM-ASDEDK-RY 60

Query: 61 WVAEPGIDRKASAFIARFYEARVSDPERQTLS 91
          WVAEPGIDRKASAFIA+F+  RVS+ ERQTLS
Sbjct: 61 WVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of MELO3C006762.2 vs. TAIR10
Match: AT1G48325.1 (Expressed protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.3e-06
Identity = 30/85 (35.29%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1  MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWV 60
          MGG  +  K  S   ++KS  F    ++  N    + E++   +R R+  +D+D  S  +
Sbjct: 3  MGGHGRRRKSSSSFSVVKS-LFARCSKEKDN----WNEERMINVRPRIMTTDDDGCSWTI 62

Query: 61 AEPGIDRKASAFIARFYEARVSDPE 86
          AEP IDR+A+AFIA+F+E  + D E
Sbjct: 63 AEPCIDRRATAFIAKFHETPIQDTE 82

[Close]

BLAST of MELO3C006762.2 vs. TrEMBL
Match: tr|E5GC50|E5GC50_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 24 MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 83
          MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 84 PERQTLSL 92
          PERQTLSL
Sbjct: 61 PERQTLSL 68

[Close]

BLAST of MELO3C006762.2 vs. TrEMBL
Match: tr|A0A0A0LAW1|A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.3e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 24 MGGRDYGNDY-GGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 83
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 84 DPERQTLSL 92
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of MELO3C006762.2 vs. TrEMBL
Match: tr|W9RIP1|W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-16
Identity = 54/92 (58.70%), Postives = 62/92 (67.39%), Query Frame = 0


Query: 1  MGGRSKSL-KCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRW 60
          MG + KS    FS C I  S CF    RD  N   G +      +RRR+ PSDEDRG  W
Sbjct: 1  MGRQGKSTSSLFSLCSIF-SACFSSSSRDDTNSEEGVY------IRRRICPSDEDRGG-W 60

Query: 61 VAEPGIDRKASAFIARFYEARVSDPERQTLSL 92
          +AEPGIDRKASAFIARFYE+RVSDPERQTL++
Sbjct: 61 IAEPGIDRKASAFIARFYESRVSDPERQTLAV 84

[Close]

BLAST of MELO3C006762.2 vs. TrEMBL
Match: tr|B9HXC1|B9HXC1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G003900v3 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15
Identity = 56/95 (58.95%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 1  MGGRS---KSLKC-FSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRG 60
          MGG S   KS  C FS   I KSCC+  G  D   D  GY+        RR  PSDED G
Sbjct: 1  MGGYSRQRKSSSCLFSIFSIFKSCCYSSGSDDMSED--GYYV-------RRACPSDED-G 60

Query: 61 SRWVAEPGIDRKASAFIARFYEARVSDPERQTLSL 92
           RWV EPGID KASAFIARFY  RVSDPERQTL+L
Sbjct: 61 RRWVGEPGIDGKASAFIARFYATRVSDPERQTLAL 85

[Close]

BLAST of MELO3C006762.2 vs. TrEMBL
Match: tr|A0A199U9N6|A0A199U9N6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S097000 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-15
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 3  GRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAE 62
          GR +   CFS   I K+CC           +G     + G   RR+ PSDED G RW+A+
Sbjct: 5  GRQRKSSCFSIFNIFKTCC----------SHGSDDISEDGFYVRRICPSDED-GRRWIAD 64

Query: 63 PGIDRKASAFIARFYEARVSDPERQTLSL 92
          PGID +ASAFIARFYEARVSDPERQTL+L
Sbjct: 65 PGIDGRASAFIARFYEARVSDPERQTLAL 82

The following BLAST results are available for this feature:

BLAST of MELO3C006762.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34048.1	8.3e-32	100.00	hypothetical protein [Cucumis melo subsp. melo]	[more]
XP_022138231.1	5.9e-30	78.02	uncharacterized protein LOC111009454 [Momordica charantia]	[more]
XP_022935735.1	5.9e-30	74.73	uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 unchar...	[more]
KGN57216.1	5.0e-29	95.65	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
XP_024922636.1	1.7e-16	57.30	uncharacterized protein LOC112488971 [Ziziphus jujuba]	[more]

BLAST of MELO3C006762.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26620.1	4.4e-11	70.45	unknown protein	[more]
AT3G05858.1	5.8e-11	50.00	unknown protein	[more]
AT1G48325.1	4.3e-06	35.29	Expressed protein	[more]

BLAST of MELO3C006762.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C006762.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC50\|E5GC50_CUCME	5.5e-32	100.00	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0LAW1\|A0A0A0LAW1_CUCSA	3.3e-29	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1	[more]
tr\|W9RIP1\|W9RIP1_9ROSA	1.9e-16	58.70	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026133 PE=4 SV=1	[more]
tr\|B9HXC1\|B9HXC1_POPTR	1.6e-15	58.95	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G003900v3 PE=...	[more]
tr\|A0A199U9N6\|A0A199U9N6_MANES	3.6e-15	53.93	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S097000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006762.2.1	MELO3C006762.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF10	SUBFAMILY NOT NAMED	coord: 1..90
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006762.2	Csa3G171730	Cucumber (Chinese Long) v2	cumedB223
MELO3C006762.2	CSPI03G15470	Wild cucumber (PI 183967)	cpimedB224
MELO3C006762.2	CmaCh14G015500	Cucurbita maxima (Rimu)	cmamedB273
MELO3C006762.2	CmaCh06G015950	Cucurbita maxima (Rimu)	cmamedB863
MELO3C006762.2	CmoCh14G015860	Cucurbita moschata (Rifu)	cmomedB260
MELO3C006762.2	CmoCh06G015900	Cucurbita moschata (Rifu)	cmomedB857
MELO3C006762.2	Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	cpemedB951
MELO3C006762.2	CsGy3G015530	Cucumber (Gy14) v2	cgybmedB201
MELO3C006762.2	Cla021838	Watermelon (97103) v1	medwmB447
MELO3C006762.2	Cla97C05G088610	Watermelon (97103) v2	medwmbB423
MELO3C006762.2	Carg15520	Silver-seed gourd	carmedB0706
MELO3C006762.2	CsaV3_3G015630	Cucumber (Chinese Long) v3	cucmedB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006762.2	Wax gourd	medwgoB530
MELO3C006762.2	Cucumber (Gy14) v1	cgymedB432
MELO3C006762.2	Cucurbita pepo (Zucchini)	cpemedB693
MELO3C006762.2	Bottle gourd (USVL1VR-Ls)	lsimedB397
MELO3C006762.2	Watermelon (Charleston Gray)	medwcgB416
MELO3C006762.2	Silver-seed gourd	carmedB0292