CSPI03G15470 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G15470
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	BnaA09g04130D protein
Location	Chr3 : 11528434 .. 11528640 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAAGAGATTATGGGAATGACTATGAAGGTCATTATTTTGAAGATCAAAGTGGTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCTGATCCCGAACGCCAAACTCTTTCTCTT

mRNA sequence

ATGGGAGGAAGAGATTATGGGAATGACTATGAAGGTCATTATTTTGAAGATCAAAGTGGTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCTGATCCCGAACGCCAAACTCTTTCTCTT

Coding sequence (CDS)

ATGGGAGGAAGAGATTATGGGAATGACTATGAAGGTCATTATTTTGAAGATCAAAGTGGTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCTGATCCCGAACGCCAAACTCTTTCTCTT

Homology

[Close]

BLAST of CSPI03G15470 vs. TrEMBL
Match: A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of CSPI03G15470 vs. TrEMBL
Match: E5GC50_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYGG-YFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 61 DPERQTLSL 68

[Close]

BLAST of CSPI03G15470 vs. TrEMBL
Match: W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.6e-14
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 4  RDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPE 63
          RD  N  EG Y       IRRR+ PSDEDRG  W+AEPGIDRKASAFIARFYE+RVSDPE
Sbjct: 27 RDDTNSEEGVY-------IRRRICPSDEDRGG-WIAEPGIDRKASAFIARFYESRVSDPE 84

Query: 64 RQTLSL 70
          RQTL++
Sbjct: 87 RQTLAV 84

[Close]

BLAST of CSPI03G15470 vs. TrEMBL
Match: A0A067E1Z2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038144mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1


Query: 17 DQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPER 65
          D  G   RR+WPSDED+G+ WVAEPGIDRKASAFIA+F+EAR+S+ ER
Sbjct: 31 DDVGCTARRIWPSDEDKGAYWVAEPGIDRKASAFIAKFHEARISESER 78

[Close]

BLAST of CSPI03G15470 vs. TrEMBL
Match: V4S2I2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013220mg PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-11
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1


Query: 17 DQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPER 65
          D  G   RR+WPSDED+G+ WVAEPGIDRKASAFIA+F+EAR+S+ ER
Sbjct: 31 DDVGCTARRIWPSDEDKGAYWVAEPGIDRKASAFIAKFHEARISESER 78

[Close]

BLAST of CSPI03G15470 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1


Query: 24 RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTL 68
          R+ W SDED+   WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of CSPI03G15470 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-10
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 17 DQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTLS 69
          D  G  R+ M  SDED+   WVAEPGIDRKASAFIA+F+  RVS+ ERQTLS
Sbjct: 34 DDFGYTRKAM-ASDEDK-RYWVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CSPI03G15470 vs. NCBI nr
Match: gi|700202083|gb|KGN57216.1| (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of CSPI03G15470 vs. NCBI nr
Match: gi|659077069|ref|XP_008439016.1| (PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo])

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 24 MGGRDYGNDYGG-YFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 83

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 84 DPERQTLSL 91

[Close]

BLAST of CSPI03G15470 vs. NCBI nr
Match: gi|307136210|gb|ADN34048.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1


Query: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYGG-YFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 61 DPERQTLSL 70
          DPERQTLSL
Sbjct: 61 DPERQTLSL 68

[Close]

BLAST of CSPI03G15470 vs. NCBI nr
Match: gi|703107460|ref|XP_010098752.1| (hypothetical protein L484_026133 [Morus notabilis])

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-14
Identity = 46/66 (69.70%), Postives = 51/66 (77.27%), Query Frame = 1


Query: 4  RDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPE 63
          RD  N  EG Y       IRRR+ PSDEDRG  W+AEPGIDRKASAFIARFYE+RVSDPE
Sbjct: 27 RDDTNSEEGVY-------IRRRICPSDEDRGG-WIAEPGIDRKASAFIARFYESRVSDPE 84

Query: 64 RQTLSL 70
          RQTL++
Sbjct: 87 RQTLAV 84

[Close]

BLAST of CSPI03G15470 vs. NCBI nr
Match: gi|657995939|ref|XP_008390328.1| (PREDICTED: uncharacterized protein LOC103452598 [Malus domestica])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-11
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 7  GNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQT 66
          G+  + +Y +D    +RRRM PSDEDRG  W AEPGIDRKA+AFI+RFY +RVSDPE QT
Sbjct: 21 GSRDDAYYSDDGGVYVRRRMCPSDEDRGG-WTAEPGIDRKATAFISRFYASRVSDPECQT 80

Query: 67 LS 69
           +
Sbjct: 81 FA 81

The following BLAST results are available for this feature:

BLAST of CSPI03G15470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI03G15470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAW1_CUCSA	1.0e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1	[more]
E5GC50_CUCME	2.3e-29	95.65	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RIP1_9ROSA	3.6e-14	69.70	Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1	[more]
A0A067E1Z2_CITSI	1.7e-11	70.83	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038144mg PE=4 SV=1	[more]
V4S2I2_9ROSI	1.7e-11	70.83	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013220mg PE=4 SV=1	[more]

BLAST of CSPI03G15470 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26620.1	3.3e-11	70.45	unknown protein	[more]
AT3G05858.1	2.8e-10	65.38	unknown protein	[more]

BLAST of CSPI03G15470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202083\|gb\|KGN57216.1\|	1.5e-32	100.00	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
gi\|659077069\|ref\|XP_008439016.1\|	3.3e-29	95.65	PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo]	[more]
gi\|307136210\|gb\|ADN34048.1\|	3.3e-29	95.65	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|703107460\|ref\|XP_010098752.1\|	5.2e-14	69.70	hypothetical protein L484_026133 [Morus notabilis]	[more]
gi\|657995939\|ref\|XP_008390328.1\|	1.8e-11	61.29	PREDICTED: uncharacterized protein LOC103452598 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G15470.1	CSPI03G15470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 2..68 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G15470	Cla021838	Watermelon (97103) v1	cpiwmB231
CSPI03G15470	Csa3G171730	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G15470	MELO3C006762	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G15470	MELO3C006762.2	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G15470	CsaV3_3G015630	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G15470	Cla97C05G088610	Watermelon (97103) v2	cpiwmbB209
CSPI03G15470	CmaCh06G015950	Cucurbita maxima (Rimu)	cmacpiB826
CSPI03G15470	CmaCh14G015500	Cucurbita maxima (Rimu)	cmacpiB255
CSPI03G15470	CmoCh14G015860	Cucurbita moschata (Rifu)	cmocpiB243
CSPI03G15470	CmoCh06G015900	Cucurbita moschata (Rifu)	cmocpiB814
CSPI03G15470	Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	cpecpiB861
CSPI03G15470	CsGy3G015530	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G15470	Carg15520	Silver-seed gourd	carcpiB0728

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G15470	Wax gourd	cpiwgoB269
CSPI03G15470	Cucumber (Gy14) v1	cgycpiB383
CSPI03G15470	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G15470	Cucurbita pepo (Zucchini)	cpecpiB611
CSPI03G15470	Bottle gourd (USVL1VR-Ls)	cpilsiB208
CSPI03G15470	Silver-seed gourd	carcpiB0310