CmaCh06G015950 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G015950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Genomic DNA, chromosome 3, P1 clone: MKP6
Location	Cma_Chr06 : 9945376 .. 9945606 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGCTTCTCAATTTGCAGCATCTTTAAAAGCTGTTGCTTTTCAAAAGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATCGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

mRNA sequence

ATGAAATGCTTCTCAATTTGCAGCATCTTTAAAAGCTGTTGCTTTTCAAAAGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATCGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

Coding sequence (CDS)

ATGAAATGCTTCTCAATTTGCAGCATCTTTAAAAGCTGTTGCTTTTCAAAAGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATCGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

Protein sequence

MKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRKASAFIARFYDARVSDPERQTLAV

Homology

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BLAST of CmaCh06G015950 vs. TrEMBL
Match: A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-18
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 18 GGRDEG-------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 77
          GGRD G       + D+SGEIRRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSD
Sbjct: 2  GGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 61

[Close]

BLAST of CmaCh06G015950 vs. TrEMBL
Match: W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-18
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 4  FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGIDRKASAFIARFY 63
          FS+CSIF S CFS   RD+   +E   IRRR+ PSDED   W+AEPGIDRKASAFIARFY
Sbjct: 12 FSLCSIF-SACFSSSSRDDTNSEEGVYIRRRICPSDEDRGGWIAEPGIDRKASAFIARFY 71

Query: 64 DARVSDPERQTLAV 77
          ++RVSDPERQTLAV
Sbjct: 72 ESRVSDPERQTLAV 84

[Close]

BLAST of CmaCh06G015950 vs. TrEMBL
Match: E5GC50_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-18
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 18 GGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSDP 77
          GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSDP
Sbjct: 2  GGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDP 61

[Close]

BLAST of CmaCh06G015950 vs. TrEMBL
Match: B9HXC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00650g PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 51/74 (68.92%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 4  FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDED-TRWVAEPGIDRKASAFIARFY 63
          FSI SIFKSCC+S G  D     E G   RR  PSDED  RWV EPGID KASAFIARFY
Sbjct: 15 FSIFSIFKSCCYSSGSDD---MSEDGYYVRRACPSDEDGRRWVGEPGIDGKASAFIARFY 74

Query: 64 DARVSDPERQTLAV 77
            RVSDPERQTLA+
Sbjct: 75 ATRVSDPERQTLAL 85

[Close]

BLAST of CmaCh06G015950 vs. TrEMBL
Match: A0A067K878_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19109 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-15
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1


Query: 3  CFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDED-TRWVAEPGIDRKASAFIARF 62
          CFS+ +IFK+CC S G  D     E G   RR++PSDED  RW+ +PGID +ASAFIARF
Sbjct: 8  CFSMLNIFKACC-SHGSDDIS---EDGFYIRRIYPSDEDGRRWIGDPGIDGRASAFIARF 67

Query: 63 YDARVSDPERQTLAV 77
          Y++RVSDPERQTLA+
Sbjct: 68 YESRVSDPERQTLAL 78

[Close]

BLAST of CmaCh06G015950 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-13
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1


Query: 2  KCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGIDRKASAFIAR 61
          K FS+ S FK+    +   D G WD+ G  R+ M  SDED R WVAEPGIDRKASAFIA+
Sbjct: 11 KRFSLFSFFKTRRSHRVEAD-GSWDDFGYTRKAM-ASDEDKRYWVAEPGIDRKASAFIAK 70

Query: 62 FYDARVSDPERQTLA 76
          F+  RVS+ ERQTL+
Sbjct: 71 FHATRVSESERQTLS 83

[Close]

BLAST of CmaCh06G015950 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 9.7e-12
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1


Query: 33 RRMWPSDEDTR-WVAEPGIDRKASAFIARFYDARVSDPERQTL 75
          R+ W SDED R WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDKRYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|659077069|ref|XP_008439016.1| (PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-26
Identity = 61/84 (72.62%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 1  MKCFSICSIFKSCCFSKGGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDR 60
          +KCFS C I KSCCF  GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDR
Sbjct: 8  LKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDR 67

Query: 61 KASAFIARFYDARVSDPERQTLAV 77
          KASAFIARFY+ARVSDPERQTL++
Sbjct: 68 KASAFIARFYEARVSDPERQTLSL 91

[Close]

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|700202083|gb|KGN57216.1| (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-18
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 18 GGRDEG-------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 77
          GGRD G       + D+SGEIRRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSD
Sbjct: 2  GGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 61

[Close]

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|703107460|ref|XP_010098752.1| (hypothetical protein L484_026133 [Morus notabilis])

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1


Query: 4  FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGIDRKASAFIARFY 63
          FS+CSIF S CFS   RD+   +E   IRRR+ PSDED   W+AEPGIDRKASAFIARFY
Sbjct: 12 FSLCSIF-SACFSSSSRDDTNSEEGVYIRRRICPSDEDRGGWIAEPGIDRKASAFIARFY 71

Query: 64 DARVSDPERQTLAV 77
          ++RVSDPERQTLAV
Sbjct: 72 ESRVSDPERQTLAV 84

[Close]

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|307136210|gb|ADN34048.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-18
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 18 GGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSDP 77
          GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSDP
Sbjct: 2  GGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDP 61

[Close]

BLAST of CmaCh06G015950 vs. NCBI nr
Match: gi|224106998|ref|XP_002314338.1| (hypothetical protein POPTR_0010s00650g [Populus trichocarpa])

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-16
Identity = 51/74 (68.92%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 4  FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDED-TRWVAEPGIDRKASAFIARFY 63
          FSI SIFKSCC+S G  D     E G   RR  PSDED  RWV EPGID KASAFIARFY
Sbjct: 15 FSIFSIFKSCCYSSGSDD---MSEDGYYVRRACPSDEDGRRWVGEPGIDGKASAFIARFY 74

Query: 64 DARVSDPERQTLAV 77
            RVSDPERQTLA+
Sbjct: 75 ATRVSDPERQTLAL 85

The following BLAST results are available for this feature:

BLAST of CmaCh06G015950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G015950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAW1_CUCSA	1.6e-18	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1	[more]
W9RIP1_9ROSA	2.0e-18	70.27	Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1	[more]
E5GC50_CUCME	2.7e-18	74.63	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
B9HXC1_POPTR	1.5e-16	68.92	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00650g PE=4 SV=1	[more]
A0A067K878_JATCU	6.1e-15	61.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19109 PE=4 SV=1	[more]

BLAST of CmaCh06G015950 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	2.3e-13	57.33	unknown protein	[more]
AT5G26620.1	9.7e-12	74.42	unknown protein	[more]

BLAST of CmaCh06G015950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077069\|ref\|XP_008439016.1\|	2.9e-26	72.62	PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo]	[more]
gi\|700202083\|gb\|KGN57216.1\|	2.2e-18	75.00	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
gi\|703107460\|ref\|XP_010098752.1\|	2.9e-18	70.27	hypothetical protein L484_026133 [Morus notabilis]	[more]
gi\|307136210\|gb\|ADN34048.1\|	3.8e-18	74.63	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|224106998\|ref\|XP_002314338.1\|	2.1e-16	68.92	hypothetical protein POPTR_0010s00650g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G015950.1	CmaCh06G015950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 4..75 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G015950	Cla021838	Watermelon (97103) v1	cmawmB798
CmaCh06G015950	Csa3G171730	Cucumber (Chinese Long) v2	cmacuB814
CmaCh06G015950	MELO3C006762	Melon (DHL92) v3.5.1	cmameB763
CmaCh06G015950	CSPI03G15470	Wild cucumber (PI 183967)	cmacpiB826
CmaCh06G015950	CmoCh06G015900	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G015950	CmoCh14G015860	Cucurbita moschata (Rifu)	cmacmoB797
CmaCh06G015950	Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	cmacpeB853
CmaCh06G015950	MELO3C006762.2	Melon (DHL92) v3.6.1	cmamedB863
CmaCh06G015950	CsaV3_3G015630	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G015950	Cla97C05G088610	Watermelon (97103) v2	cmawmbB856
CmaCh06G015950	CsGy3G015530	Cucumber (Gy14) v2	cgybcmaB427
CmaCh06G015950	Carg15520	Silver-seed gourd	carcmaB0974

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G015950	CmaCh14G015500	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G015950	Wax gourd	cmawgoB1006
CmaCh06G015950	Cucumber (Gy14) v1	cgycmaB0727
CmaCh06G015950	Watermelon (Charleston Gray)	cmawcgB737
CmaCh06G015950	Cucurbita pepo (Zucchini)	cmacpeB837
CmaCh06G015950	Bottle gourd (USVL1VR-Ls)	cmalsiB765
CmaCh06G015950	Silver-seed gourd	carcmaB0393