Cp4.1LG08g05510 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g05510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaA03g29190D protein
Location	Cp4.1LG08 : 826720 .. 826971 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGAAGATCAAAGTCCATGAAATGCTTCTCAATTTGCAGCATCTTTAAGAGCTGTTGCTTTTCAAAGGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATTGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

mRNA sequence

ATGGGGGGAAGATCAAAGTCCATGAAATGCTTCTCAATTTGCAGCATCTTTAAGAGCTGTTGCTTTTCAAAGGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATTGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

Coding sequence (CDS)

ATGGGGGGAAGATCAAAGTCCATGAAATGCTTCTCAATTTGCAGCATCTTTAAGAGCTGTTGCTTTTCAAAGGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATTGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTGCTGTTTAG

Protein sequence

MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRKASAFIARFYDARVSDPERQTLAV

Homology

[Close]

BLAST of Cp4.1LG08g05510 vs. TrEMBL
Match: W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.9e-19
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 1


Query: 1  MGGRSKSMKC-FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGID 60
          MG + KS    FS+CSIF S CFS   RD+   +E   IRRR+ PSDED   W+AEPGID
Sbjct: 1  MGRQGKSTSSLFSLCSIF-SACFSSSSRDDTNSEEGVYIRRRICPSDEDRGGWIAEPGID 60

Query: 61 RKASAFIARFYDARVSDPERQTLAV 84
          RKASAFIARFY++RVSDPERQTLAV
Sbjct: 61 RKASAFIARFYESRVSDPERQTLAV 84

[Close]

BLAST of Cp4.1LG08g05510 vs. TrEMBL
Match: A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-18
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 25 GGRDEG-------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 84
          GGRD G       + D+SGEIRRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSD
Sbjct: 2  GGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 61

[Close]

BLAST of Cp4.1LG08g05510 vs. TrEMBL
Match: E5GC50_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.9e-18
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 25 GGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSDP 84
          GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSDP
Sbjct: 2  GGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDP 61

[Close]

BLAST of Cp4.1LG08g05510 vs. TrEMBL
Match: B9HXC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00650g PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 58/88 (65.91%), Postives = 60/88 (68.18%), Query Frame = 1


Query: 1  MGGRS---KSMKC-FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDED-TRWVAEP 60
          MGG S   KS  C FSI SIFKSCC+S G  D     E G   RR  PSDED  RWV EP
Sbjct: 1  MGGYSRQRKSSSCLFSIFSIFKSCCYSSGSDD---MSEDGYYVRRACPSDEDGRRWVGEP 60

Query: 61 GIDRKASAFIARFYDARVSDPERQTLAV 84
          GID KASAFIARFY  RVSDPERQTLA+
Sbjct: 61 GIDGKASAFIARFYATRVSDPERQTLAL 85

[Close]

BLAST of Cp4.1LG08g05510 vs. TrEMBL
Match: A5C459_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01000 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.9e-15
Identity = 52/81 (64.20%), Postives = 56/81 (69.14%), Query Frame = 1


Query: 4  RSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGIDRKAS 63
          R K    FSI SIFK+CC S G  D   WDE+G   RR+ PSDED   WVAEPGIDRKAS
Sbjct: 6  RQKKSSFFSIFSIFKACC-SPGWDDT--WDEAGNYGRRICPSDEDRHGWVAEPGIDRKAS 65

Query: 64 AFIARFYDARVSDPERQTLAV 84
           FIA+FY  RVSDP  QTLAV
Sbjct: 66 EFIAKFYATRVSDP--QTLAV 81

[Close]

BLAST of Cp4.1LG08g05510 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 4.6e-15
Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 1  MGG--RSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGI 60
          MGG  RS S K FS+ S FK+    +   D G WD+ G  R+ M  SDED R WVAEPGI
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKTRRSHRVEAD-GSWDDFGYTRKAM-ASDEDKRYWVAEPGI 60

Query: 61 DRKASAFIARFYDARVSDPERQTLA 83
          DRKASAFIA+F+  RVS+ ERQTL+
Sbjct: 61 DRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Cp4.1LG08g05510 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 1


Query: 40 RRMWPSDEDTR-WVAEPGIDRKASAFIARFYDARVSDPERQTL 82
          R+ W SDED R WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDKRYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of Cp4.1LG08g05510 vs. TAIR10
Match: AT1G48325.1 (AT1G48325.1 Expressed protein)

HSP 1 Score: 50.8 bits (120), Expect = 4.6e-07
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 1


Query: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESG--EIRRRMWPSDED-TRW-VAEPG 60
          MGG  +  K  S  S+ KS  F++  +++  W+E     +R R+  +D+D   W +AEP 
Sbjct: 3  MGGHGRRRKSSSSFSVVKSL-FARCSKEKDNWNEERMINVRPRIMTTDDDGCSWTIAEPC 62

Query: 61 IDRKASAFIARFYDARVSDPE 78
          IDR+A+AFIA+F++  + D E
Sbjct: 63 IDRRATAFIAKFHETPIQDTE 82

[Close]

BLAST of Cp4.1LG08g05510 vs. NCBI nr
Match: gi|659077069|ref|XP_008439016.1| (PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 2.8e-30
Identity = 68/91 (74.73%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEG------YWDESGEIRRRMWPSDED--TRWV 60
          MGGRSKS+KCFS C I KSCCF  GGRD G      + D+SGE+RRRMWPSDED  +RWV
Sbjct: 1  MGGRSKSLKCFSFCGILKSCCFPMGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWV 60

Query: 61 AEPGIDRKASAFIARFYDARVSDPERQTLAV 84
          AEPGIDRKASAFIARFY+ARVSDPERQTL++
Sbjct: 61 AEPGIDRKASAFIARFYEARVSDPERQTLSL 91

[Close]

BLAST of Cp4.1LG08g05510 vs. NCBI nr
Match: gi|703107460|ref|XP_010098752.1| (hypothetical protein L484_026133 [Morus notabilis])

HSP 1 Score: 101.3 bits (251), Expect = 8.4e-19
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = 1


Query: 1  MGGRSKSMKC-FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGID 60
          MG + KS    FS+CSIF S CFS   RD+   +E   IRRR+ PSDED   W+AEPGID
Sbjct: 1  MGRQGKSTSSLFSLCSIF-SACFSSSSRDDTNSEEGVYIRRRICPSDEDRGGWIAEPGID 60

Query: 61 RKASAFIARFYDARVSDPERQTLAV 84
          RKASAFIARFY++RVSDPERQTLAV
Sbjct: 61 RKASAFIARFYESRVSDPERQTLAV 84

[Close]

BLAST of Cp4.1LG08g05510 vs. NCBI nr
Match: gi|700202083|gb|KGN57216.1| (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 2.4e-18
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 25 GGRDEG-------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 84
          GGRD G       + D+SGEIRRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSD
Sbjct: 2  GGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 61

[Close]

BLAST of Cp4.1LG08g05510 vs. NCBI nr
Match: gi|307136210|gb|ADN34048.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-18
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1


Query: 25 GGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSDP 84
          GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSDP
Sbjct: 2  GGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDP 61

[Close]

BLAST of Cp4.1LG08g05510 vs. NCBI nr
Match: gi|224106998|ref|XP_002314338.1| (hypothetical protein POPTR_0010s00650g [Populus trichocarpa])

HSP 1 Score: 97.1 bits (240), Expect = 1.6e-17
Identity = 58/88 (65.91%), Postives = 60/88 (68.18%), Query Frame = 1


Query: 1  MGGRS---KSMKC-FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDED-TRWVAEP 60
          MGG S   KS  C FSI SIFKSCC+S G  D     E G   RR  PSDED  RWV EP
Sbjct: 1  MGGYSRQRKSSSCLFSIFSIFKSCCYSSGSDD---MSEDGYYVRRACPSDEDGRRWVGEP 60

Query: 61 GIDRKASAFIARFYDARVSDPERQTLAV 84
          GID KASAFIARFY  RVSDPERQTLA+
Sbjct: 61 GIDGKASAFIARFYATRVSDPERQTLAL 85

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG08g05510 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RIP1_9ROSA	5.9e-19	65.88	Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1	[more]
A0A0A0LAW1_CUCSA	1.7e-18	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1	[more]
E5GC50_CUCME	2.9e-18	74.63	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
B9HXC1_POPTR	1.1e-17	65.91	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s00650g PE=4 SV=1	[more]
A5C459_VITVI	3.9e-15	64.20	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01000 PE=4 SV=...	[more]

BLAST of Cp4.1LG08g05510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	4.6e-15	57.65	unknown protein	[more]
AT5G26620.1	1.1e-11	74.42	unknown protein	[more]
AT1G48325.1	4.6e-07	37.04	Expressed protein	[more]

BLAST of Cp4.1LG08g05510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077069\|ref\|XP_008439016.1\|	2.8e-30	74.73	PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo]	[more]
gi\|703107460\|ref\|XP_010098752.1\|	8.4e-19	65.88	hypothetical protein L484_026133 [Morus notabilis]	[more]
gi\|700202083\|gb\|KGN57216.1\|	2.4e-18	75.00	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
gi\|307136210\|gb\|ADN34048.1\|	4.2e-18	74.63	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|224106998\|ref\|XP_002314338.1\|	1.6e-17	65.91	hypothetical protein POPTR_0010s00650g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g05510.1	Cp4.1LG08g05510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..82 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g05510	CmaCh14G015500	Cucurbita maxima (Rimu)	cmacpeB292
Cp4.1LG08g05510	CmaCh06G015950	Cucurbita maxima (Rimu)	cmacpeB853
Cp4.1LG08g05510	CmoCh14G015860	Cucurbita moschata (Rifu)	cmocpeB254
Cp4.1LG08g05510	CmoCh06G015900	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g05510	Cla021838	Watermelon (97103) v1	cpewmB845
Cp4.1LG08g05510	Csa3G171730	Cucumber (Chinese Long) v2	cpecuB859
Cp4.1LG08g05510	MELO3C006762	Melon (DHL92) v3.5.1	cpemeB813
Cp4.1LG08g05510	CSPI03G15470	Wild cucumber (PI 183967)	cpecpiB861
Cp4.1LG08g05510	MELO3C006762.2	Melon (DHL92) v3.6.1	cpemedB951
Cp4.1LG08g05510	CsaV3_3G015630	Cucumber (Chinese Long) v3	cpecucB1056
Cp4.1LG08g05510	CsGy3G015530	Cucumber (Gy14) v2	cgybcpeB454
Cp4.1LG08g05510	Carg15520	Silver-seed gourd	carcpeB0974

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g05510	Wax gourd	cpewgoB1110
Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	cpecpeB482
Cp4.1LG08g05510	Cucumber (Gy14) v1	cgycpeB0687
Cp4.1LG08g05510	Cucurbita maxima (Rimu)	cmacpeB412
Cp4.1LG08g05510	Cucurbita moschata (Rifu)	cmocpeB373
Cp4.1LG08g05510	Bottle gourd (USVL1VR-Ls)	cpelsiB697
Cp4.1LG08g05510	Bottle gourd (USVL1VR-Ls)	cpelsiB715
Cp4.1LG08g05510	Watermelon (Charleston Gray)	cpewcgB787
Cp4.1LG08g05510	Watermelon (97103) v1	cpewmB853
Cp4.1LG08g05510	Melon (DHL92) v3.5.1	cpemeB793
Cp4.1LG08g05510	Silver-seed gourd	carcpeB0396