CmaCh14G015500 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G015500
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Genomic DNA, chromosome 3, P1 clone: MKP6
Location	Cma_Chr14 : 11683061 .. 11683658 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGAAGATCAAAGTCCTTGAAATGCTTCTCAATTTGCAGCATATTGAAAAGCTGCTGCTTCCCAATGGTGGGAGGAAGAGATAATGATGAAGCTTATTGGGATGAAAGCGCTGAAATTAGAAGAAGGATGTGGCCAAGTGATCAAGATAGTAGAGGTAGATGGGTGGCTGAGCCTGGAATTGATCGTAAAGCTTCTGATTTTATTGCTAGATTCTATGAGTCTCGTGTTTCTGATTCTGAGCAACAAACTTTTGCGGTTTGAATCACAGCTGTTCTTCTTCTTTGGCCGAATCTATGCTCCGTTCTTCCTTACTGATATCGTTCTCTTTGAGCTGATGTAATGTTCGTGGGTTGGTTTGGTTTAGGTTGAGTTGAGTTGAGTTGGATTTTGGCCGATCTTTCTGTTTCTCTCGATTTTGTAATCTTTTGTTCTTGTGATCAATAAAAGTTGGAATTTTTTTAAGTGGGTTGATCAATATCTCGATTACTAGGTCGATTTAGTTTAAGATATTAATTTTGGAATTATTTTGGTTCTTGATGTTTAGGTTTTGAAGGTGTTCTCGATAGATTTGGAGCCATATTTTTGTTCTTGA

mRNA sequence

ATGGGAGGAAGATCAAAGTCCTTGAAATGCTTCTCAATTTGCAGCATATTGAAAAGCTGCTGCTTCCCAATGGTGGGAGGAAGAGATAATGATGAAGCTTATTGGGATGAAAGCGCTGAAATTAGAAGAAGGATGTGGCCAAGTGATCAAGATAGTAGAGGTAGATGGGTGGCTGAGCCTGGAATTGATCGTAAAGCTTCTGATTTTATTGCTAGATTCTATGAGTCTCGTGTTTCTGATTCTGAGCAACAAACTTTTGCGGTTTTGAAGGTGTTCTCGATAGATTTGGAGCCATATTTTTGTTCTTGA

Coding sequence (CDS)

ATGGGAGGAAGATCAAAGTCCTTGAAATGCTTCTCAATTTGCAGCATATTGAAAAGCTGCTGCTTCCCAATGGTGGGAGGAAGAGATAATGATGAAGCTTATTGGGATGAAAGCGCTGAAATTAGAAGAAGGATGTGGCCAAGTGATCAAGATAGTAGAGGTAGATGGGTGGCTGAGCCTGGAATTGATCGTAAAGCTTCTGATTTTATTGCTAGATTCTATGAGTCTCGTGTTTCTGATTCTGAGCAACAAACTTTTGCGGTTTTGAAGGTGTTCTCGATAGATTTGGAGCCATATTTTTGTTCTTGA

Protein sequence

MGGRSKSLKCFSICSILKSCCFPMVGGRDNDEAYWDESAEIRRRMWPSDQDSRGRWVAEPGIDRKASDFIARFYESRVSDSEQQTFAVLKVFSIDLEPYFCS

Homology

[Close]

BLAST of CmaCh14G015500 vs. TrEMBL
Match: A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.7e-16
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 25 VGGRDNDEAYW-----DESAEIRRRMWPSDQDSRGRWVAEPGIDRKASDFIARFYESRVS 84
          +GGRD    Y      D+S EIRRRMWPSD+D   RWVAEPGIDRKAS FIARFYE+RVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 85 DSEQQTFAV 89
          D E+QT ++
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of CmaCh14G015500 vs. TrEMBL
Match: E5GC50_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-15
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 25 VGGRDNDEAYW----DESAEIRRRMWPSDQDSRGRWVAEPGIDRKASDFIARFYESRVSD 84
          +GGRD    Y     D+S E+RRRMWPSD+D   RWVAEPGIDRKAS FIARFYE+RVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 85 SEQQTFAV 89
           E+QT ++
Sbjct: 61 PERQTLSL 68

[Close]

BLAST of CmaCh14G015500 vs. TrEMBL
Match: W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-15
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 1


Query: 1  MGGRSKSLKC-FSICSILKSCCFPMVGGRDNDEAYWDESAEIRRRMWPSDQDSRGRWVAE 60
          MG + KS    FS+CSI  +C          D+   +E   IRRR+ PSD+D RG W+AE
Sbjct: 1  MGRQGKSTSSLFSLCSIFSAC----FSSSSRDDTNSEEGVYIRRRICPSDED-RGGWIAE 60

Query: 61 PGIDRKASDFIARFYESRVSDSEQQTFAV 89
          PGIDRKAS FIARFYESRVSD E+QT AV
Sbjct: 61 PGIDRKASAFIARFYESRVSDPERQTLAV 84

[Close]

BLAST of CmaCh14G015500 vs. TrEMBL
Match: G7JR32_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g124220 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1


Query: 1  MGGRSKSLKCFSICSILKSCCFPMVGGRDNDEAYWDESAEIRRRMWPSDQDSRGRWVAEP 60
          MGG+  S    S C +LKSC     GG   D+ Y+ +     RR++ SD+D RGRWVAEP
Sbjct: 1  MGGKKSS----SFCGMLKSCFSS--GGSSRDDYYYYDDDGSSRRIFASDED-RGRWVAEP 60

Query: 61 GIDRKASDFIARFYESRVSDSEQQ 85
          GID+KAS FIARFY +R +DSEQQ
Sbjct: 61 GIDKKASAFIARFYANRATDSEQQ 77

[Close]

BLAST of CmaCh14G015500 vs. TrEMBL
Match: A5C459_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01000 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.5e-13
Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 4  RSKSLKCFSICSILKSCCFPMVGGRDNDEAYWDESAEIRRRMWPSDQDSRGRWVAEPGID 63
          R K    FSI SI K+CC P   G D+    WDE+    RR+ PSD+D  G WVAEPGID
Sbjct: 6  RQKKSSFFSIFSIFKACCSP---GWDDT---WDEAGNYGRRICPSDEDRHG-WVAEPGID 65

Query: 64 RKASDFIARFYESRVSDSEQQTFAV 89
          RKAS+FIA+FY +RVSD   QT AV
Sbjct: 66 RKASEFIAKFYATRVSD--PQTLAV 81

[Close]

BLAST of CmaCh14G015500 vs. TAIR10
Match: AT3G05858.1 (AT3G05858.1 unknown protein)

HSP 1 Score: 67.0 bits (162), Expect = 7.6e-12
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 1  MGG--RSKSLKCFSICSILKSCCFPMVGGRDNDEAYWDESAEIRRRMWPSDQDSRGRWVA 60
          MGG  RS S K FS+ S  K+        R   +  WD+    R+ M  SD+D R  WVA
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKT----RRSHRVEADGSWDDFGYTRKAM-ASDEDKR-YWVA 60

Query: 61 EPGIDRKASDFIARFYESRVSDSEQQTFA 88
          EPGIDRKAS FIA+F+ +RVS+SE+QT +
Sbjct: 61 EPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CmaCh14G015500 vs. TAIR10
Match: AT5G26620.1 (AT5G26620.1 unknown protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-11
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 1


Query: 32 EAYWDESAEIRRRMWPSDQDSRGRWVAEPGIDRKASDFIARFYESRVSDSEQQT 86
          +A WD+     R+ W SD+D R  WVAEPGIDRKAS FIA+F+ SRVS+SE+QT
Sbjct: 14 DASWDDVI-YTRKAWASDEDKR-YWVAEPGIDRKASAFIAKFHASRVSESERQT 65

[Close]

BLAST of CmaCh14G015500 vs. TAIR10
Match: AT1G48325.1 (AT1G48325.1 Expressed protein)

HSP 1 Score: 50.4 bits (119), Expect = 7.4e-07
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 1


Query: 1  MGGRSKSLKCFSICSILKSCCFPMVGGRDNDEAYWDESA--EIRRRMWPSDQDSRGRWVA 60
          MGG  +  K  S  S++KS        +DN    W+E     +R R+  +D D     +A
Sbjct: 3  MGGHGRRRKSSSSFSVVKSLFARCSKEKDN----WNEERMINVRPRIMTTDDDGCSWTIA 62

Query: 61 EPGIDRKASDFIARFYESRVSDSE 83
          EP IDR+A+ FIA+F+E+ + D+E
Sbjct: 63 EPCIDRRATAFIAKFHETPIQDTE 82

[Close]

BLAST of CmaCh14G015500 vs. NCBI nr
Match: gi|659077069|ref|XP_008439016.1| (PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.4e-28
Identity = 66/92 (71.74%), Postives = 73/92 (79.35%), Query Frame = 1


Query: 1  MGGRSKSLKCFSICSILKSCCFPMVGGRDNDEAYW----DESAEIRRRMWPSDQDSRGRW 60
          MGGRSKSLKCFS C ILKSCCFPM GGRD    Y     D+S E+RRRMWPSD+D   RW
Sbjct: 1  MGGRSKSLKCFSFCGILKSCCFPM-GGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRW 60

Query: 61 VAEPGIDRKASDFIARFYESRVSDSEQQTFAV 89
          VAEPGIDRKAS FIARFYE+RVSD E+QT ++
Sbjct: 61 VAEPGIDRKASAFIARFYEARVSDPERQTLSL 91

[Close]

BLAST of CmaCh14G015500 vs. NCBI nr
Match: gi|700202083|gb|KGN57216.1| (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 25 VGGRDNDEAYW-----DESAEIRRRMWPSDQDSRGRWVAEPGIDRKASDFIARFYESRVS 84
          +GGRD    Y      D+S EIRRRMWPSD+D   RWVAEPGIDRKAS FIARFYE+RVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 85 DSEQQTFAV 89
          D E+QT ++
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of CmaCh14G015500 vs. NCBI nr
Match: gi|307136210|gb|ADN34048.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1


Query: 25 VGGRDNDEAYW----DESAEIRRRMWPSDQDSRGRWVAEPGIDRKASDFIARFYESRVSD 84
          +GGRD    Y     D+S E+RRRMWPSD+D   RWVAEPGIDRKAS FIARFYE+RVSD
Sbjct: 1  MGGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 60

Query: 85 SEQQTFAV 89
           E+QT ++
Sbjct: 61 PERQTLSL 68

[Close]

BLAST of CmaCh14G015500 vs. NCBI nr
Match: gi|703107460|ref|XP_010098752.1| (hypothetical protein L484_026133 [Morus notabilis])

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-15
Identity = 50/89 (56.18%), Postives = 59/89 (66.29%), Query Frame = 1


Query: 1  MGGRSKSLKC-FSICSILKSCCFPMVGGRDNDEAYWDESAEIRRRMWPSDQDSRGRWVAE 60
          MG + KS    FS+CSI  +C          D+   +E   IRRR+ PSD+D RG W+AE
Sbjct: 1  MGRQGKSTSSLFSLCSIFSAC----FSSSSRDDTNSEEGVYIRRRICPSDED-RGGWIAE 60

Query: 61 PGIDRKASDFIARFYESRVSDSEQQTFAV 89
          PGIDRKAS FIARFYESRVSD E+QT AV
Sbjct: 61 PGIDRKASAFIARFYESRVSDPERQTLAV 84

[Close]

BLAST of CmaCh14G015500 vs. NCBI nr
Match: gi|657995939|ref|XP_008390328.1| (PREDICTED: uncharacterized protein LOC103452598 [Malus domestica])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 1


Query: 3  GRSKSLKCFSICSILKSCCFPMVGGRDNDEAYW--DESAEIRRRMWPSDQDSRGRWVAEP 62
          G+  SL  FS C+I K+C          D+AY+  D    +RRRM PSD+D RG W AEP
Sbjct: 2  GKQSSL--FSFCNIFKAC----FSSGSRDDAYYSDDGGVYVRRRMCPSDED-RGGWTAEP 61

Query: 63 GIDRKASDFIARFYESRVSDSEQQTFA 88
          GIDRKA+ FI+RFY SRVSD E QTFA
Sbjct: 62 GIDRKATAFISRFYASRVSDPECQTFA 81

The following BLAST results are available for this feature:

BLAST of CmaCh14G015500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh14G015500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAW1_CUCSA	9.7e-16	65.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G171730 PE=4 SV=1	[more]
E5GC50_CUCME	1.3e-15	64.71	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RIP1_9ROSA	1.7e-15	56.18	Uncharacterized protein OS=Morus notabilis GN=L484_026133 PE=4 SV=1	[more]
G7JR32_MEDTR	3.5e-13	53.57	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g124220 PE=4 SV=1	[more]
A5C459_VITVI	3.5e-13	56.47	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01000 PE=4 SV=...	[more]

BLAST of CmaCh14G015500 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	7.6e-12	48.31	unknown protein	[more]
AT5G26620.1	3.8e-11	61.11	unknown protein	[more]
AT1G48325.1	7.4e-07	35.71	Expressed protein	[more]

BLAST of CmaCh14G015500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077069\|ref\|XP_008439016.1\|	1.4e-28	71.74	PREDICTED: uncharacterized protein LOC103483934 [Cucumis melo]	[more]
gi\|700202083\|gb\|KGN57216.1\|	1.4e-15	65.22	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
gi\|307136210\|gb\|ADN34048.1\|	1.8e-15	64.71	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|703107460\|ref\|XP_010098752.1\|	2.4e-15	56.18	hypothetical protein L484_026133 [Morus notabilis]	[more]
gi\|657995939\|ref\|XP_008390328.1\|	1.3e-13	55.17	PREDICTED: uncharacterized protein LOC103452598 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G015500.1	CmaCh14G015500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..87 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G015500	Cla021838	Watermelon (97103) v1	cmawmB242
CmaCh14G015500	Csa3G171730	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G015500	MELO3C006762	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G015500	CSPI03G15470	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G015500	CmoCh06G015900	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G015500	CmoCh14G015860	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G015500	Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G015500	MELO3C006762.2	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G015500	CsaV3_3G015630	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G015500	Cla97C05G088610	Watermelon (97103) v2	cmawmbB263
CmaCh14G015500	CsGy3G015530	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G015500	Carg15520	Silver-seed gourd	carcmaB0972

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G015500	CmaCh06G015950	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G015500	Wax gourd	cmawgoB0328
CmaCh14G015500	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G015500	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G015500	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G015500	Bottle gourd (USVL1VR-Ls)	cmalsiB246
CmaCh14G015500	Silver-seed gourd	carcmaB0391