Carg15520 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15520
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	BnaC03g34390D protein
Location	Cucurbita_argyrosperma_scaffold_069 : 652944 .. 653195 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGAAGATCAAAGTCCATGAAATGCTTCTCAATTTGCAGCATCTTTAAGAGCTGTTGCTTTTCAAAGGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATTGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTTCCGTTTAG

mRNA sequence

ATGGGGGGAAGATCAAAGTCCATGAAATGCTTCTCAATTTGCAGCATCTTTAAGAGCTGTTGCTTTTCAAAGGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATTGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTTCCGTTTAG

Coding sequence (CDS)

ATGGGGGGAAGATCAAAGTCCATGAAATGCTTCTCAATTTGCAGCATCTTTAAGAGCTGTTGCTTTTCAAAGGGTGGAAGAGATGAAGGGTATTGGGATGAAAGTGGTGAGATTAGGCGTAGGATGTGGCCTAGTGATGAAGATACAAGATGGGTGGCTGAGCCTGGGATTGATCGGAAAGCTTCTGCTTTTATTGCTAGATTCTATGACGCTCGTGTTTCTGATCCCGAACGACAAACGCTTTCCGTTTAG

Protein sequence

MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRKASAFIARFYDARVSDPERQTLSV

Homology

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BLAST of Carg15520 vs. NCBI nr
Match: XP_022935735.1 (uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 uncharacterized protein LOC111800720 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRK 60
          MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRK
Sbjct: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTRWVAEPGIDRK 60

Query: 61 ASAFIARFYDARVSDPERQTLSV 84
          ASAFIARFYDARVSDPERQTL+V
Sbjct: 61 ASAFIARFYDARVSDPERQTLAV 83

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BLAST of Carg15520 vs. NCBI nr
Match: XP_022138231.1 (uncharacterized protein LOC111009454 [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-30
Identity = 71/87 (81.61%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MGGRSKSMKCFSICSIFKSCCFSKGGR---DEGYWDESGEIRRRMWPSDEDT-RWVAEPG 60
          MGGR KS KCFSICSI KSCCF  GGR   D GYWDES EIRRRMWPSDED  RWVAEPG
Sbjct: 1  MGGR-KSSKCFSICSILKSCCFPMGGRSSEDGGYWDESAEIRRRMWPSDEDRGRWVAEPG 60

Query: 61 IDRKASAFIARFYDARVSDPERQTLSV 84
          IDRKASAFIARFY+ARVSDP+RQT +V
Sbjct: 61 IDRKASAFIARFYEARVSDPQRQTFAV 86

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BLAST of Carg15520 vs. NCBI nr
Match: KGN57216.1 (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 1.6e-18
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 25 GGRDEG-------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 84
          GGRD G       + D+SGEIRRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSD
Sbjct: 2  GGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 61

[Close]

BLAST of Carg15520 vs. NCBI nr
Match: ADN34048.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-18
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 25 GGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSDP 84
          GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSDP
Sbjct: 2  GGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDP 61

[Close]

BLAST of Carg15520 vs. NCBI nr
Match: XP_024922636.1 (uncharacterized protein LOC112488971 [Ziziphus jujuba])

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 3  GRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDT-RWVAEPGIDRKA 62
          G+ KS   FS C+IFK+ CFS G  ++ Y +E   IRRR++ SDED   W AEPGIDRKA
Sbjct: 2  GKGKSASLFSFCNIFKA-CFSSGSNEDAYSEEGYYIRRRIYASDEDRGGWTAEPGIDRKA 61

Query: 63 SAFIARFYDARVSDPERQTLSV 84
          SAFIARFY++RVSD ERQTL+V
Sbjct: 62 SAFIARFYESRVSDSERQTLAV 82

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BLAST of Carg15520 vs. TAIR10
Match: AT3G05858.1 (unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-15
Identity = 50/85 (58.82%), Postives = 58/85 (68.24%), Query Frame = 0


Query: 1  MGG--RSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDTR-WVAEPGI 60
          MGG  RS S K FS+ S FK+    +   D G WD+ G  R+ M  SDED R WVAEPGI
Sbjct: 1  MGGKNRSHSSKRFSLFSFFKTRRSHRVEAD-GSWDDFGYTRKAM-ASDEDKRYWVAEPGI 60

Query: 61 DRKASAFIARFYDARVSDPERQTLS 83
          DRKASAFIA+F+  RVS+ ERQTLS
Sbjct: 61 DRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of Carg15520 vs. TAIR10
Match: AT5G26620.1 (unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.1e-11
Identity = 32/43 (74.42%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 40 RRMWPSDEDTR-WVAEPGIDRKASAFIARFYDARVSDPERQTL 82
          R+ W SDED R WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDKRYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of Carg15520 vs. TAIR10
Match: AT1G48325.1 (Expressed protein)

HSP 1 Score: 50.8 bits (120), Expect = 4.6e-07
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MGGRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESG--EIRRRMWPSDED-TRW-VAEPG 60
          MGG  +  K  S  S+ KS  F++  +++  W+E     +R R+  +D+D   W +AEP 
Sbjct: 3  MGGHGRRRKSSSSFSVVKS-LFARCSKEKDNWNEERMINVRPRIMTTDDDGCSWTIAEPC 62

Query: 61 IDRKASAFIARFYDARVSDPE 78
          IDR+A+AFIA+F++  + D E
Sbjct: 63 IDRRATAFIAKFHETPIQDTE 82

[Close]

BLAST of Carg15520 vs. TrEMBL
Match: tr|A0A0A0LAW1|A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 25 GGRDEG-------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSD 84
          GGRD G       + D+SGEIRRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSD
Sbjct: 2  GGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSD 61

[Close]

BLAST of Carg15520 vs. TrEMBL
Match: tr|E5GC50|E5GC50_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 25 GGRDEG------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIARFYDARVSDP 84
          GGRD G      + D+SGE+RRRMWPSDED  +RWVAEPGIDRKASAFIARFY+ARVSDP
Sbjct: 2  GGRDYGNDYGGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDP 61

[Close]

BLAST of Carg15520 vs. TrEMBL
Match: tr|W9RIP1|W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 1  MGGRSKS-MKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDT-RWVAEPGID 60
          MG + KS    FS+CSIF S CFS   RD+   +E   IRRR+ PSDED   W+AEPGID
Sbjct: 1  MGRQGKSTSSLFSLCSIF-SACFSSSSRDDTNSEEGVYIRRRICPSDEDRGGWIAEPGID 60

Query: 61 RKASAFIARFYDARVSDPERQTLSV 84
          RKASAFIARFY++RVSDPERQTL+V
Sbjct: 61 RKASAFIARFYESRVSDPERQTLAV 84

[Close]

BLAST of Carg15520 vs. TrEMBL
Match: tr|B9HXC1|B9HXC1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G003900v3 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-17
Identity = 57/88 (64.77%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 1  MGGRS---KSMKC-FSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDED-TRWVAEP 60
          MGG S   KS  C FSI SIFKSCC+S G  D     E G   RR  PSDED  RWV EP
Sbjct: 1  MGGYSRQRKSSSCLFSIFSIFKSCCYSSGSDD---MSEDGYYVRRACPSDEDGRRWVGEP 60

Query: 61 GIDRKASAFIARFYDARVSDPERQTLSV 84
          GID KASAFIARFY  RVSDPERQTL++
Sbjct: 61 GIDGKASAFIARFYATRVSDPERQTLAL 85

[Close]

BLAST of Carg15520 vs. TrEMBL
Match: tr|A0A2P5CUX2|A0A2P5CUX2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_120410 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.5e-17
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 3  GRSKSMKCFSICSIFKSCCFSKGGRDEGYWDESGEIRRRMWPSDEDT-RWVAEPGIDRKA 62
          GR      FS+CSIF S CFS   RD+   +E   IRRR+ PSDED   W+AEPGIDR+A
Sbjct: 2  GRHGKSSLFSLCSIF-SACFSSSSRDDTNSEEGVYIRRRICPSDEDRGGWIAEPGIDRRA 61

Query: 63 SAFIARFYDARVSDPERQTLSV 84
          S FI+RFY++RVSDPERQTL+V
Sbjct: 62 SDFISRFYESRVSDPERQTLTV 82

The following BLAST results are available for this feature:

BLAST of Carg15520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935735.1	1.4e-41	98.80	uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 unchar...	[more]
XP_022138231.1	1.4e-30	81.61	uncharacterized protein LOC111009454 [Momordica charantia]	[more]
KGN57216.1	1.6e-18	76.47	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
ADN34048.1	2.8e-18	76.12	hypothetical protein [Cucumis melo subsp. melo]	[more]
XP_024922636.1	3.6e-18	62.20	uncharacterized protein LOC112488971 [Ziziphus jujuba]	[more]

BLAST of Carg15520 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05858.1	2.1e-15	58.82	unknown protein	[more]
AT5G26620.1	1.1e-11	74.42	unknown protein	[more]
AT1G48325.1	4.6e-07	37.04	Expressed protein	[more]

BLAST of Carg15520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15520 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAW1\|A0A0A0LAW1_CUCSA	1.1e-18	76.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1	[more]
tr\|E5GC50\|E5GC50_CUCME	1.8e-18	76.12	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|W9RIP1\|W9RIP1_9ROSA	2.4e-18	64.71	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026133 PE=4 SV=1	[more]
tr\|B9HXC1\|B9HXC1_POPTR	4.5e-17	64.77	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G003900v3 PE=...	[more]
tr\|A0A2P5CUX2\|A0A2P5CUX2_PARAD	4.5e-17	60.98	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_120410 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15520-RA	Carg15520-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 1..80
None	No IPR available	PANTHER	PTHR33511:SF8	SUBFAMILY NOT NAMED	coord: 1..80

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15520	Cla021838	Watermelon (97103) v1	carwmB0692
Carg15520	Csa3G171730	Cucumber (Chinese Long) v2	carcuB0714
Carg15520	MELO3C006762	Melon (DHL92) v3.5.1	carmeB0693
Carg15520	CSPI03G15470	Wild cucumber (PI 183967)	carcpiB0728
Carg15520	CmaCh06G015950	Cucurbita maxima (Rimu)	carcmaB0974
Carg15520	CmaCh14G015500	Cucurbita maxima (Rimu)	carcmaB0972
Carg15520	CmoCh14G015860	Cucurbita moschata (Rifu)	carcmoB0946
Carg15520	CmoCh06G015900	Cucurbita moschata (Rifu)	carcmoB0947
Carg15520	Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	carcpeB0974
Carg15520	CsGy3G015530	Cucumber (Gy14) v2	carcgybB0691
Carg15520	MELO3C006762.2	Melon (DHL92) v3.6.1	carmedB0706
Carg15520	CsaV3_3G015630	Cucumber (Chinese Long) v3	carcucB0731
Carg15520	Cla97C05G088610	Watermelon (97103) v2	carwmbB0720

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None