CsaV3_3G015630 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G015630
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	BnaA09g04130D protein
Location	chr3 : 11641897 .. 11642128 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATTGAAAAGCTGTTGTTTCATGGGAGGAAGAGATTATGGGAATGACTATGAAGGTCATTATTTTGAAGATCAAAGTGGTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

mRNA sequence

ATATTGAAAAGCTGTTGTTTCATGGGAGGAAGAGATTATGGGAATGACTATGAAGGTCATTATTTTGAAGATCAAAGTGGTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

Coding sequence (CDS)

ATATTGAAAAGCTGTTGTTTCATGGGAGGAAGAGATTATGGGAATGACTATGAAGGTCATTATTTTGAAGATCAAAGTGGTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATAGAGGAAGTAGATGGGTTGCTGAGCCTGGAATTGATCGTAAAGCTTCTGCTTTTATTGCTAGATTCTACGAAGCTCGTGTTTCCGATCCCGAACGCCAAACTCTTTCTCTTTAA

Protein sequence

ILKSCCFMGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTLSL

Homology

[Close]

BLAST of CsaV3_3G015630 vs. NCBI nr
Match: KGN57216.1 (hypothetical protein Csa_3G171730 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 8.3e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 8  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 67
          MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 68 DPERQTLSL 77
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of CsaV3_3G015630 vs. NCBI nr
Match: ADN34048.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 137.1 bits (344), Expect = 2.5e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 8  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 67
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDY-GGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 68 DPERQTLSL 77
          DPERQTLSL
Sbjct: 61 DPERQTLSL 68

[Close]

BLAST of CsaV3_3G015630 vs. NCBI nr
Match: XP_022138231.1 (uncharacterized protein LOC111009454 [Momordica charantia])

HSP 1 Score: 112.8 bits (281), Expect = 5.0e-22
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  ILKSCCF-MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIA 60
          ILKSCCF MGGR   +  +G Y+ D+S EIRRRMWPSDEDRG RWVAEPGIDRKASAFIA
Sbjct: 15 ILKSCCFPMGGR---SSEDGGYW-DESAEIRRRMWPSDEDRG-RWVAEPGIDRKASAFIA 74

Query: 61 RFYEARVSDPERQTLSL 77
          RFYEARVSDP+RQT ++
Sbjct: 75 RFYEARVSDPQRQTFAV 86

[Close]

BLAST of CsaV3_3G015630 vs. NCBI nr
Match: XP_022935735.1 (uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 uncharacterized protein LOC111800720 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 57/77 (74.03%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 1  ILKSCCF-MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIA 60
          I KSCCF  GGRD G       + D+SGEIRRRMWPSDED  +RWVAEPGIDRKASAFIA
Sbjct: 16 IFKSCCFSKGGRDEG-------YWDESGEIRRRMWPSDED--TRWVAEPGIDRKASAFIA 75

Query: 61 RFYEARVSDPERQTLSL 77
          RFY+ARVSDPERQTL++
Sbjct: 76 RFYDARVSDPERQTLAV 83

[Close]

BLAST of CsaV3_3G015630 vs. NCBI nr
Match: EXB75655.1 (hypothetical protein L484_026133 [Morus notabilis])

HSP 1 Score: 90.9 bits (224), Expect = 2.1e-15
Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  ILKSCCFMGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAR 60
          I  +C     RD  N  EG Y       IRRR+ PSDEDRG  W+AEPGIDRKASAFIAR
Sbjct: 17 IFSACFSSSSRDDTNSEEGVY-------IRRRICPSDEDRGG-WIAEPGIDRKASAFIAR 76

Query: 61 FYEARVSDPERQTLSL 77
          FYE+RVSDPERQTL++
Sbjct: 77 FYESRVSDPERQTLAV 84

[Close]

BLAST of CsaV3_3G015630 vs. TAIR10
Match: AT5G26620.1 (unknown protein)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-11
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 31 RRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTL 75
          R+ W SDED+   WVAEPGIDRKASAFIA+F+ +RVS+ ERQTL
Sbjct: 24 RKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSESERQTL 66

[Close]

BLAST of CsaV3_3G015630 vs. TAIR10
Match: AT3G05858.1 (unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-10
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 24 DQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPERQTLS 76
          D  G  R+ M  SDED+   WVAEPGIDRKASAFIA+F+  RVS+ ERQTLS
Sbjct: 34 DDFGYTRKAM-ASDEDK-RYWVAEPGIDRKASAFIAKFHATRVSESERQTLS 83

[Close]

BLAST of CsaV3_3G015630 vs. TAIR10
Match: AT1G48325.1 (Expressed protein)

HSP 1 Score: 45.1 bits (105), Expect = 2.3e-05
Identity = 21/48 (43.75%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 23 EDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVSDPE 71
          E++   +R R+  +D+D  S  +AEP IDR+A+AFIA+F+E  + D E
Sbjct: 35 EERMINVRPRIMTTDDDGCSWTIAEPCIDRRATAFIAKFHETPIQDTE 82

[Close]

BLAST of CsaV3_3G015630 vs. TrEMBL
Match: tr|A0A0A0LAW1|A0A0A0LAW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 5.5e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 8  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 67
          MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 68 DPERQTLSL 77
          DPERQTLSL
Sbjct: 61 DPERQTLSL 69

[Close]

BLAST of CsaV3_3G015630 vs. TrEMBL
Match: tr|E5GC50|E5GC50_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-29
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 8  MGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 67
          MGGRDYGNDY G YFEDQSGE+RRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS
Sbjct: 1  MGGRDYGNDY-GGYFEDQSGEMRRRMWPSDEDRGSRWVAEPGIDRKASAFIARFYEARVS 60

Query: 68 DPERQTLSL 77
          DPERQTLSL
Sbjct: 61 DPERQTLSL 68

[Close]

BLAST of CsaV3_3G015630 vs. TrEMBL
Match: tr|W9RIP1|W9RIP1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026133 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 48/76 (63.16%), Postives = 54/76 (71.05%), Query Frame = 0


Query: 1  ILKSCCFMGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAR 60
          I  +C     RD  N  EG Y       IRRR+ PSDEDRG  W+AEPGIDRKASAFIAR
Sbjct: 17 IFSACFSSSSRDDTNSEEGVY-------IRRRICPSDEDRGG-WIAEPGIDRKASAFIAR 76

Query: 61 FYEARVSDPERQTLSL 77
          FYE+RVSDPERQTL++
Sbjct: 77 FYESRVSDPERQTLAV 84

[Close]

BLAST of CsaV3_3G015630 vs. TrEMBL
Match: tr|A0A2P5CUX2|A0A2P5CUX2_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_120410 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.3e-14
Identity = 45/76 (59.21%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 1  ILKSCCFMGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAR 60
          I  +C     RD  N  EG Y       IRRR+ PSDEDRG  W+AEPGIDR+AS FI+R
Sbjct: 15 IFSACFSSSSRDDTNSEEGVY-------IRRRICPSDEDRGG-WIAEPGIDRRASDFISR 74

Query: 61 FYEARVSDPERQTLSL 77
          FYE+RVSDPERQTL++
Sbjct: 75 FYESRVSDPERQTLTV 82

[Close]

BLAST of CsaV3_3G015630 vs. TrEMBL
Match: tr|A0A199U9N6|A0A199U9N6_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S097000 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.4e-14
Identity = 46/76 (60.53%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 1  ILKSCCFMGGRDYGNDYEGHYFEDQSGEIRRRMWPSDEDRGSRWVAEPGIDRKASAFIAR 60
          I K+CC  G  D   D  G Y         RR+ PSDED G RW+A+PGID +ASAFIAR
Sbjct: 18 IFKTCCSHGSDDISED--GFYV--------RRICPSDED-GRRWIADPGIDGRASAFIAR 77

Query: 61 FYEARVSDPERQTLSL 77
          FYEARVSDPERQTL+L
Sbjct: 78 FYEARVSDPERQTLAL 82

The following BLAST results are available for this feature:

BLAST of CsaV3_3G015630 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57216.1	8.3e-33	100.00	hypothetical protein Csa_3G171730 [Cucumis sativus]	[more]
ADN34048.1	2.5e-29	95.65	hypothetical protein [Cucumis melo subsp. melo]	[more]
XP_022138231.1	5.0e-22	76.62	uncharacterized protein LOC111009454 [Momordica charantia]	[more]
XP_022935735.1	1.9e-21	74.03	uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 unchar...	[more]
EXB75655.1	2.1e-15	63.16	hypothetical protein L484_026133 [Morus notabilis]	[more]

BLAST of CsaV3_3G015630 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26620.1	2.2e-11	70.45	unknown protein	[more]
AT3G05858.1	1.9e-10	65.38	unknown protein	[more]
AT1G48325.1	2.3e-05	43.75	Expressed protein	[more]

BLAST of CsaV3_3G015630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G015630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAW1\|A0A0A0LAW1_CUCSA	5.5e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1	[more]
tr\|E5GC50\|E5GC50_CUCME	1.7e-29	95.65	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|W9RIP1\|W9RIP1_9ROSA	1.4e-15	63.16	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026133 PE=4 SV=1	[more]
tr\|A0A2P5CUX2\|A0A2P5CUX2_PARAD	3.3e-14	59.21	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_120410 PE...	[more]
tr\|A0A199U9N6\|A0A199U9N6_MANES	7.4e-14	60.53	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S097000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G015630.1	CsaV3_3G015630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF8	SUBFAMILY NOT NAMED	coord: 2..73
None	No IPR available	PANTHER	PTHR33511	FAMILY NOT NAMED	coord: 2..73

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G015630	CSPI03G15470	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G015630	CmaCh14G015500	Cucurbita maxima (Rimu)	cmacucB0291
CsaV3_3G015630	CmaCh06G015950	Cucurbita maxima (Rimu)	cmacucB0965
CsaV3_3G015630	CmoCh14G015860	Cucurbita moschata (Rifu)	cmocucB0283
CsaV3_3G015630	CmoCh06G015900	Cucurbita moschata (Rifu)	cmocucB0953
CsaV3_3G015630	Cp4.1LG08g05510	Cucurbita pepo (Zucchini)	cpecucB1056
CsaV3_3G015630	CsGy3G015530	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G015630	Carg15520	Silver-seed gourd	carcucB0731
CsaV3_3G015630	Cla021838	Watermelon (97103) v1	cucwmB239
CsaV3_3G015630	MELO3C006762	Melon (DHL92) v3.5.1	cucmeB236
CsaV3_3G015630	MELO3C006762.2	Melon (DHL92) v3.6.1	cucmedB230
CsaV3_3G015630	Cla97C05G088610	Watermelon (97103) v2	cucwmbB206

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G015630	Silver-seed gourd	carcucB0309
CsaV3_3G015630	Cucumber (Gy14) v1	cgycucB387
CsaV3_3G015630	Cucurbita pepo (Zucchini)	cpecucB0759
CsaV3_3G015630	Bottle gourd (USVL1VR-Ls)	cuclsiB229
CsaV3_3G015630	Bottle gourd (USVL1VR-Ls)	cuclsiB245
CsaV3_3G015630	Watermelon (Charleston Gray)	cucwcgB225
CsaV3_3G015630	Wax gourd	cucwgoB272