Cla021088 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021088
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Holliday junction resolvase (AHRD V1 ***- B6TEN1_MAIZE); contains Interpro domain(s) IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Location	Chr5 : 325914 .. 329488 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGCGCAACGTTTCCAACCCTTTCAGTTTCCGCTGCAGAGCCACAATCTTGTGTCTCCCACCATTTTCTGTCTTCCACCACTCCCTTCCTCCCTATCCCTTCCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCACAACCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTAATTTTTCTTCATTTTCGCCTCTCTGCGTTTTTCTGTAGCTTGTAATTTCAGCACATTGAACTAATCCACTCTTGTCCTAGATGCTTGCTTTACATTTTTCTGTCTTTCTGCCTACTTTTCTCCTAAATTTAGCGTTATTAACGCAATCATGGTCGATGTCTGGGACATCACTGTTTATAATGTGGCCAACGGCAGACTGCTATTATATTTTCAATTATGTTTTACACAGTCCACCACGCTCTTTTTACTCGGCTGGTTTTATGTTATACATGTATATTGAAATTACAAACGCTTTCCGGCATTAGACTCAATGGTGTGTGTTATCATTCGTTTGGGACTTATGATTTCTGTAGCTGGCTTAGGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGTATATACCTCTCCATCTCTGACGATCTTGCTAATGAAATGCTATCAACATGTTGGAATTATATTTCTTCTCTTTACTTGCACAATAATTCATCCATTGATGGAAAAAAAAACTGTAGGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACACCTCAGTCAAATAAAATTCGAAGTATTGCTGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGTGAAATACACCGAATGGTTGCACTTGATTCTCCTATGTCTTCCTCTCTGTTCTGATACTGCTTTTAGTTTAGGGGCTGGAGAGTTTACTTGCATGATGAACATGGGACAACGGCAGAAGCGGACAGCCATATGATTTCCAAGTATTGTTGTCCTCAACACTCACTTATGTTGTCTCTTGTTTAATATTGTTTCCGTGGATTCTATCCTATAAAATTTCATGCATCTCCTCTATTAATATTGTCAGTGTAAACTATATCGCACTTAATGGATTGTCATTCAACATAGTGCCATATTGATTTATCCATTTCCTCTGAGGATTTTGTTGACGTAGATTTTAGGGGTTTGTAGAAATGATAGACTGCCATGTGAAGATTCTTAGACCAATGGCGAACTGAAACTGATGTTAATCTCTATTCTCTACCATTTGGCATTAACTTCATGAATTTATCAAGGTGATGCAGACAGTTGGTTGTTATTTGCTATGGTATTATTGGGATAGGTAGGAATGGAAGAGATGAACACTGGATAAGAAGGTAGAAAAAGCTTATCCCAAATGGAGAAAAAAAAAAGATCTAAGAAGTGCAATGATTTAACATAAGAGATAAAATGAGAACTTTCTCCAAGAATCAAATTAAAATCTTTATTATCAATTAAAAGCGATCAATACTGGCAGGCTAAGTCTGTCTCTTTGTGGGACCCTGTGGTGTTTAAAGTTTGGAATCGGTTAGCCCATTGGAATAGCCCATTGGAAAAATTCCCCCCCCCCCCAAAAAAAAGCAGGTAGGCTAACCTTGATGAAGACTACCTTGAGTGGTATTCCTATTTATTACTTTTCGCTTTTCAGGGCCCATGTGAGGTGTATAAGTGTATGGAGAGGTTGATGCATGACTTCCTTTGGGAAGGGGTTGATGAAGGTAAAGGCAAAGGTTCACACTTGATTAGATGGGGGATGAGACGGTAAAGGCAAAGGTTCCCACTTGATTAGATGGGAGATGAGAGAATGGTTTCCTTGGGGGGTTTGAAAATTGGGAATCTTAGGATTCGTGACAAAACCCTTTTAGCCAAATGGTTAAGGCGCTTTTCCTCCGAGCCCAATTCTTTGTGGCGTAGGATCACTGAAAGTAAACATGGCCCCCATCATTTTGAACGGTTGTCTAAAGGGATCAAAGGTACCCACCGGAATTTGTGAAAAGATATTTCGAAAGAGCTCCCTTTTTTTGTTCATTTGGTTTGTTGTGTGGTGGGGGAGGGGAGAGATACTTACTTTTGGGAAGATCACTGGTGGGAGCTCTTGTTCCTTTTCATTCGGATTCCATCATTCTTTTTCTGATAGGGAAGCAGGGATGTGGCCGCTCTTCTTTCTTTACTCGAGGGTCACCCTTTTAGGTTGGGGAGAAGGGATGTCAGACTTTTCACCTAGCAAATGTCTCCACTGAATGCTATTGAGATCATCTGTTGATTTTATGCCTGAAAACTCAACACTGGAAGGATCTAAAAGAAACCACATTGTGACTGAGGGAGCAAAGCAAAAGTAAGATTGAATGACGTGAATGATGGAGAACCTAGTCAATTACTAGAAATTTTGATACTCGTGCAAACTTCTATATGAAACTGATGGAGAATTGACTTGTTTCTTGTGAGGGTTGTTGCATGGATAGTGACACATTTTTGTCGCCTGTGGTTATTGATGTTATCAGTTTCTGTTATTGATGTTATCAGTTTCTGTTTTGCTTTATTGTATTTAATGGAAGAGTACAATGGTACAGTTTATATTTAAAATGGGCCTTGCGGCTGTTTTTAGATTTTCATCATGCAAACAAGATACTTTGTTGACATAAGAAAAGAAAAAAATTTGTTATCCCACTAGTATAGAAAAGACTTCTTTTTTTTTTTTTTTTTTCTTTTTGTTTTCTAATTGTTTTTTAGATATTTCTCTTGCGGTTCTCTCAGTTTAAATTGTATGACTCTGAGACCCTGTCCGTTCATTAGCTATGGTTAGACTGTATGTTGCATCGACTGGAAGAACTCTATGTAATCTTTTAGGCTCGGGGTTGGCTTTCCTCCCCCTCCTTTCCTCCACTCCTTTTGTAGTTCCAATTAATCTATGAAATTGGTTGGTTTGTTACTGAAAAATAGATAATGATATCCTCTTTATATCAGTAGATCTATACTTCTCTATTTGGGTTGGTCACGTAATGACGTATAGTAATGTAACAAGATTTGAATATGGAAAATTGACATTTTGATGTTTTGTTCAGGGGGCTCAATAAATCTACTCGGCAGAAGAAGATTGATGCCTATGCTGCCATGGTAAAGTTGTGAATATTTTCATATTATGAGCACTGGATTATATGAAATGCAGCAATCCATGTGCAGGCTTCCTTTTTTTTTTTTTTAATAATTTTTTCACTTTACTTCTCTTTATTTGATGCAGATGGTACTAGAGAGATATTTTTTCTAATAATTTTTTCACATTACTTCTCTTTATTTGATGCAGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAACCGAGCTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAGCTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA

mRNA sequence

ATGTGTGCGCAACGTTTCCAACCCTTTCAGTTTCCGCTGCAGAGCCACAATCTTGTGTCTCCCACCATTTTCTGTCTTCCACCACTCCCTTCCTCCCTATCCCTTCCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCACAACCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACACCTCAGTCAAATAAAATTCGAAGTATTGCTGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGGGCTGGAGAGTTTACTTGCATGATGAACATGGGACAACGGCAGAAGCGGACAGCCATATGATTTCCAAGGGGCTCAATAAATCTACTCGGCAGAAGAAGATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAACCGAGCTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAGCTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA

Coding sequence (CDS)

ATGTGTGCGCAACGTTTCCAACCCTTTCAGTTTCCGCTGCAGAGCCACAATCTTGTGTCTCCCACCATTTTCTGTCTTCCACCACTCCCTTCCTCCCTATCCCTTCCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCACAACCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACACCTCAGTCAAATAAAATTCGAAGTATTGCTGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGGGCTGGAGAGTTTACTTGCATGATGAACATGGGACAACGGCAGAAGCGGACAGCCATATGATTTCCAAGGGGCTCAATAAATCTACTCGGCAGAAGAAGATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAACCGAGCTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAGCTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA

Protein sequence

MCAQRFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD

Homology

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BLAST of Cla021088 vs. Swiss-Prot
Match: YQGF_NOCSJ (Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-12
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 1


Query: 71  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEEAD---EF 130
           R G  +G+D G +R G+A S   GF   P+ TV   +G    +  I  AE++E     E 
Sbjct: 2   RAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEV 61

Query: 131 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNK 190
           ++GLP+S  G+E P + K+R  AGR+AAR A     V L DE  TT  A++ +  +G   
Sbjct: 62  VVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTTVSAEAMLRDQGRTG 121

Query: 191 STRQKKIDAYAAMMVLE 202
             R+  +D  AA+++L+
Sbjct: 122 GKRRAVVDQAAAVLILQ 136

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BLAST of Cla021088 vs. Swiss-Prot
Match: YQGF_ECO57 (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-12
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1


Query: 73  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEVKLIE-IAEQEEADEFIIGLP 132
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 133 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQK 192
            + DG E P + + R  A R+  R    G  V LHDE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 193 KIDAYAAMMVLERYF 205
           KID+ +A+++LE YF
Sbjct: 123 KIDSASAVIILESYF 134

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BLAST of Cla021088 vs. Swiss-Prot
Match: YQGF_ECO5E (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-12
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1


Query: 73  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEVKLIE-IAEQEEADEFIIGLP 132
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 133 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQK 192
            + DG E P + + R  A R+  R    G  V LHDE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 193 KIDAYAAMMVLERYF 205
           KID+ +A+++LE YF
Sbjct: 123 KIDSASAVIILESYF 134

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BLAST of Cla021088 vs. Swiss-Prot
Match: YQGF_SALTY (Putative pre-16S rRNA nuclease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-12
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 1


Query: 73  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEVKLIE-IAEQEEADEFIIGLP 132
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62

Query: 133 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQK 192
            + DG E P + + R  A R+  R    G  V LHDE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 122

Query: 193 KIDAYAAMMVLERYF 205
           K+D+ +A+++LE YF
Sbjct: 123 KVDSASAVIILESYF 134

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BLAST of Cla021088 vs. Swiss-Prot
Match: YQGF_SHIFL (Putative pre-16S rRNA nuclease OS=Shigella flexneri GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.5e-12
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 1


Query: 73  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEVKLIE-IAEQEEADEFIIGLP 132
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 133 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQK 192
            + DG E P + + R  A R+  R    G  V LHDE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 193 KIDAYAAMMVLERYF 205
           K+D+ +A+++LE YF
Sbjct: 123 KVDSASAVIILESYF 134

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BLAST of Cla021088 vs. TrEMBL
Match: A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 3.4e-104
Identity = 199/235 (84.68%), Postives = 208/235 (88.51%), Query Frame = 1


Query: 5   RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCH--NPISSIELPPNAL 64
           +FQ FQFPLQ+H L+      LPP          P SP LI K H  NPISSIELPPNAL
Sbjct: 11  QFQAFQFPLQTHKLLHSLHPHLPP----------PSSPALISKSHNNNPISSIELPPNAL 70

Query: 65  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEAD 124
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEAD
Sbjct: 71  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 130

Query: 125 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGL 184
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SHMIS+GL
Sbjct: 131 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 190

Query: 185 NKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 238
           NKSTRQKKIDAYAAMMVLERYF  SG+GTEL+VPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 191 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]

BLAST of Cla021088 vs. TrEMBL
Match: A0A067KPF4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04739 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.3e-76
Identity = 162/238 (68.07%), Postives = 182/238 (76.47%), Query Frame = 1


Query: 1   MCAQRFQPFQFPLQSHNLVSPTIFCLPPL---PSSLSLPPLPPSPTLICKCHNPISSIEL 60
           MC+ +  PF   LQ   L + +I  LP +   PSSL LP LP +     +    +S  E+
Sbjct: 1   MCSLQ-NPF---LQLTELFTSSINSLPRVSNVPSSLRLP-LPQTYKHGFRLRALLSIQEI 60

Query: 61  PPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAE 120
           PPNALRRK D  WRGGFSLG+DLG SRTGLALSKGFS RPLTVLELRGQKLE++L+EIAE
Sbjct: 61  PPNALRRKSDSLWRGGFSLGIDLGLSRTGLALSKGFSFRPLTVLELRGQKLELRLLEIAE 120

Query: 121 QEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHM 180
            EEADEFIIGLPKS DGKETPQSNK+R +AGR+A RAAERGWRVYL DEHGT+ EA   M
Sbjct: 121 DEEADEFIIGLPKSSDGKETPQSNKVRCVAGRLAVRAAERGWRVYLQDEHGTSMEATYRM 180

Query: 181 ISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 236
           I  GL KS RQK +DAYAA+MVLERYF MSGEGTELVVPK L LQDKL +GPP D DF
Sbjct: 181 IDMGLRKSARQKSVDAYAAVMVLERYFCMSGEGTELVVPKQLDLQDKLRKGPPKDLDF 233

[Close]

BLAST of Cla021088 vs. TrEMBL
Match: A0A0L9VR24_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.6e-74
Identity = 152/229 (66.38%), Postives = 176/229 (76.86%), Query Frame = 1


Query: 18  LVSPTIFCLPPLPSSLSLPPLPPS--PTLI-CKCH--------NPISSIELPPNALRRKL 77
           ++S  +  LPP    LS  PL     P+ + CK          N +   ELPPNALRRK 
Sbjct: 1   MLSQQVLHLPPQKLFLSCSPLNVRKIPSFVNCKIGYGHSFLTVNALKLDELPPNALRRKR 60

Query: 78  DPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFII 137
           +P WRGGFSLG+DLG +RTGLALSKGFS RPLTVLELRGQKLEV++I IAEQEE DEFII
Sbjct: 61  EPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEQEEVDEFII 120

Query: 138 GLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKST 197
           GLPKS DGKETPQSNK+RS+AGR+A +AAERGWRVYL DEHGTT+EA   MI+ GL+KS 
Sbjct: 121 GLPKSADGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGTTSEAMDRMINMGLSKSC 180

Query: 198 RQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 236
           +QKK+DA+AAMMVLERYF  SG+GTELV+PK+L LQ KL  GPP D DF
Sbjct: 181 QQKKLDAFAAMMVLERYFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 229

[Close]

BLAST of Cla021088 vs. TrEMBL
Match: A0A0S3SXV5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.6e-74
Identity = 152/229 (66.38%), Postives = 176/229 (76.86%), Query Frame = 1


Query: 18  LVSPTIFCLPPLPSSLSLPPLPPS--PTLI-CKCH--------NPISSIELPPNALRRKL 77
           ++S  +  LPP    LS  PL     P+ + CK          N +   ELPPNALRRK 
Sbjct: 1   MLSQQVLHLPPQKLFLSCSPLNVRKIPSFVNCKIGYGHSFLTVNALKLDELPPNALRRKR 60

Query: 78  DPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFII 137
           +P WRGGFSLG+DLG +RTGLALSKGFS RPLTVLELRGQKLEV++I IAEQEE DEFII
Sbjct: 61  EPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEQEEVDEFII 120

Query: 138 GLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKST 197
           GLPKS DGKETPQSNK+RS+AGR+A +AAERGWRVYL DEHGTT+EA   MI+ GL+KS 
Sbjct: 121 GLPKSADGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGTTSEAMDRMINMGLSKSC 180

Query: 198 RQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 236
           +QKK+DA+AAMMVLERYF  SG+GTELV+PK+L LQ KL  GPP D DF
Sbjct: 181 QQKKLDAFAAMMVLERYFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 229

[Close]

BLAST of Cla021088 vs. TrEMBL
Match: A0A0B2QT40_GLYSO (Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.2e-74
Identity = 148/214 (69.16%), Postives = 168/214 (78.50%), Query Frame = 1


Query: 37  PLPP-SPTLICKCHNP--------------ISSIELPPNALRRKLDPHWRGGFSLGVDLG 96
           PLPP  P L C   NP              ++  ELPPNALR+K +P WRGGFSLG+DLG
Sbjct: 8   PLPPHKPFLRCSPSNPSFVNGKNGYCRVKALTLDELPPNALRKKREPQWRGGFSLGLDLG 67

Query: 97  TSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSN 156
            +RTGLALSKGFS RPLTVLELRGQKLEV++I IAE+EE DEFIIGLPKS DGKETPQSN
Sbjct: 68  LARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSN 127

Query: 157 KIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKKIDAYAAMMVLE 216
           K+RS+AGR+A RAAERGWRVYL DEHGTT EA   MI+  L+KS++QKK+DAYAAMMVLE
Sbjct: 128 KVRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLE 187

Query: 217 RYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 236
           RYF  SG+GTELV+PK+L LQ KL  GPP D DF
Sbjct: 188 RYFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 221

[Close]

BLAST of Cla021088 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus])

HSP 1 Score: 386.0 bits (990), Expect = 4.9e-104
Identity = 199/235 (84.68%), Postives = 208/235 (88.51%), Query Frame = 1


Query: 5   RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCH--NPISSIELPPNAL 64
           +FQ FQFPLQ+H L+      LPP          P SP LI K H  NPISSIELPPNAL
Sbjct: 11  QFQAFQFPLQTHKLLHSLHPHLPP----------PSSPALISKSHNNNPISSIELPPNAL 70

Query: 65  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEAD 124
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEAD
Sbjct: 71  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 130

Query: 125 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGL 184
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SHMIS+GL
Sbjct: 131 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 190

Query: 185 NKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 238
           NKSTRQKKIDAYAAMMVLERYF  SG+GTEL+VPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 191 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]

BLAST of Cla021088 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo])

HSP 1 Score: 385.2 bits (988), Expect = 8.3e-104
Identity = 200/241 (82.99%), Postives = 208/241 (86.31%), Query Frame = 1


Query: 1   MCAQ--RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHN--PISSIE 60
           +C Q  +FQ FQFPLQSH L+      LPP          P  P L  K HN  P SSIE
Sbjct: 42  LCGQCFQFQAFQFPLQSHRLLHSLHPHLPP----------PSPPALFSKSHNNNPFSSIE 101

Query: 61  LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIA 120
           LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLE KLI+IA
Sbjct: 102 LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIA 161

Query: 121 EQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSH 180
           EQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SH
Sbjct: 162 EQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESH 221

Query: 181 MISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFK 238
           MISKGLNKSTRQKKIDAYAAMMVLERYF MSG+GTEL+VPKSLVLQDKLIEGPPTDPDFK
Sbjct: 222 MISKGLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFK 272

[Close]

BLAST of Cla021088 vs. NCBI nr
Match: gi|778676650|ref|XP_011650631.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 1.1e-82
Identity = 164/196 (83.67%), Postives = 171/196 (87.24%), Query Frame = 1


Query: 5   RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCH--NPISSIELPPNAL 64
           +FQ FQFPLQ+H L+      LPP          P SP LI K H  NPISSIELPPNAL
Sbjct: 11  QFQAFQFPLQTHKLLHSLHPHLPP----------PSSPALISKSHNNNPISSIELPPNAL 70

Query: 65  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEAD 124
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEAD
Sbjct: 71  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 130

Query: 125 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGL 184
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SHMIS+GL
Sbjct: 131 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 190

Query: 185 NKSTRQKKIDAYAAMM 199
           NKSTRQKKIDAYAAM+
Sbjct: 191 NKSTRQKKIDAYAAMV 196

[Close]

BLAST of Cla021088 vs. NCBI nr
Match: gi|802596489|ref|XP_012072278.1| (PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas])

HSP 1 Score: 293.5 bits (750), Expect = 3.3e-76
Identity = 162/238 (68.07%), Postives = 182/238 (76.47%), Query Frame = 1


Query: 1   MCAQRFQPFQFPLQSHNLVSPTIFCLPPL---PSSLSLPPLPPSPTLICKCHNPISSIEL 60
           MC+ +  PF   LQ   L + +I  LP +   PSSL LP LP +     +    +S  E+
Sbjct: 1   MCSLQ-NPF---LQLTELFTSSINSLPRVSNVPSSLRLP-LPQTYKHGFRLRALLSIQEI 60

Query: 61  PPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAE 120
           PPNALRRK D  WRGGFSLG+DLG SRTGLALSKGFS RPLTVLELRGQKLE++L+EIAE
Sbjct: 61  PPNALRRKSDSLWRGGFSLGIDLGLSRTGLALSKGFSFRPLTVLELRGQKLELRLLEIAE 120

Query: 121 QEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHM 180
            EEADEFIIGLPKS DGKETPQSNK+R +AGR+A RAAERGWRVYL DEHGT+ EA   M
Sbjct: 121 DEEADEFIIGLPKSSDGKETPQSNKVRCVAGRLAVRAAERGWRVYLQDEHGTSMEATYRM 180

Query: 181 ISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 236
           I  GL KS RQK +DAYAA+MVLERYF MSGEGTELVVPK L LQDKL +GPP D DF
Sbjct: 181 IDMGLRKSARQKSVDAYAAVMVLERYFCMSGEGTELVVPKQLDLQDKLRKGPPKDLDF 233

[Close]

BLAST of Cla021088 vs. NCBI nr
Match: gi|720012470|ref|XP_010259874.1| (PREDICTED: uncharacterized protein LOC104599161 [Nelumbo nucifera])

HSP 1 Score: 290.4 bits (742), Expect = 2.8e-75
Identity = 148/215 (68.84%), Postives = 172/215 (80.00%), Query Frame = 1


Query: 26  LPPLPSSLSLPPLPPSPTLICKCHNP-----ISSIELPPNALRRKLDPHWRGGFSLGVDL 85
           L P+   ++  P+     L+ K H P     +S  E+PPNA RRK+DPHWRGGFS+GVDL
Sbjct: 28  LGPVLRKVTPTPISWQSPLMNKVHIPSKIRAVSIDEIPPNAFRRKIDPHWRGGFSVGVDL 87

Query: 86  GTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQS 145
           G SRTG+A+SKGFS RPLTVLELRGQKLE +L+EIAE+EEADEFIIGLPKS  GKETPQS
Sbjct: 88  GLSRTGVAVSKGFSARPLTVLELRGQKLESRLLEIAEREEADEFIIGLPKSRHGKETPQS 147

Query: 146 NKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKKIDAYAAMMVL 205
           NK+RS+AGR+A RAAERGWRVYL DEHGT+ EA   MI  G+NKSTRQ +IDA+AAMMVL
Sbjct: 148 NKVRSVAGRLAVRAAERGWRVYLQDEHGTSMEALDFMIDTGINKSTRQGRIDAFAAMMVL 207

Query: 206 ERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 236
           ERYF MSG GTELV+PK L LQ+KL +GPP D DF
Sbjct: 208 ERYFSMSGHGTELVLPKQLDLQEKLRKGPPKDEDF 242

The following BLAST results are available for this feature:

BLAST of Cla021088 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YQGF_NOCSJ	4.4e-12	35.77	Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=N...	[more]
YQGF_ECO57	5.7e-12	34.07	Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 GN=yqgF PE=3 SV=1	[more]
YQGF_ECO5E	5.7e-12	34.07	Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC...	[more]
YQGF_SALTY	7.5e-12	33.33	Putative pre-16S rRNA nuclease OS=Salmonella typhimurium (strain LT2 / SGSC1412 ...	[more]
YQGF_SHIFL	7.5e-12	33.33	Putative pre-16S rRNA nuclease OS=Shigella flexneri GN=yqgF PE=3 SV=1	[more]

BLAST of Cla021088 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3L5_CUCSA	3.4e-104	84.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1	[more]
A0A067KPF4_JATCU	2.3e-76	68.07	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04739 PE=3 SV=1	[more]
A0A0L9VR24_PHAAN	1.6e-74	66.38	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1	[more]
A0A0S3SXV5_PHAAN	1.6e-74	66.38	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=...	[more]
A0A0B2QT40_GLYSO	2.2e-74	69.16	Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1	[more]

BLAST of Cla021088 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431960\|ref\|XP_004133768.1\|	4.9e-104	84.68	PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus]	[more]
gi\|659074761\|ref\|XP_008437782.1\|	8.3e-104	82.99	PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo]	[more]
gi\|778676650\|ref\|XP_011650631.1\|	1.1e-82	83.67	PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus]	[more]
gi\|802596489\|ref\|XP_012072278.1\|	3.3e-76	68.07	PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]	[more]
gi\|720012470\|ref\|XP_010259874.1\|	2.8e-75	68.84	PREDICTED: uncharacterized protein LOC104599161 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005227	YqgF
IPR006641	YqgF/RNaseH-like_dom
IPR012337	RNaseH-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006364	rRNA processing
biological_process	GO:0031564	transcription antitermination
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0000967	rRNA 5'-end processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU53552	watermelon EST collection version 2.0	transcribed_cluster
WMU56549	watermelon EST collection version 2.0	transcribed_cluster
WMU60285	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021088	Cla021088.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU60285	WMU60285	transcribed_cluster
WMU56549	WMU56549	transcribed_cluster
WMU53552	WMU53552	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 73..208 score: 16
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 75..204 score: 5.6
IPR005227	Putative pre-16S rRNA nuclease	TIGRFAMs	TIGR00250	TIGR00250	coord: 76..204 score: 1.3
IPR006641	YqgF/RNase H-like domain	GENE3D	G3DSA:3.30.420.140		coord: 75..205 score: 1.7
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 73..173 score: 1.9
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 74..204 score: 7.74
None	No IPR available	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 56..235 score: 9.5E
None	No IPR available	PANTHER	PTHR33317:SF2	HOLLIDAY JUNCTION RESOLVASE-RELATED	coord: 56..235 score: 9.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021088	Cla97C05G080180	Watermelon (97103) v2	wmwmbB206
Cla021088	Csa3G116900	Cucumber (Chinese Long) v2	cuwmB233
Cla021088	MELO3C005958	Melon (DHL92) v3.5.1	mewmB461
Cla021088	ClCG05G000210	Watermelon (Charleston Gray)	wcgwmB286
Cla021088	CSPI03G07240	Wild cucumber (PI 183967)	cpiwmB231
Cla021088	Cucsa.259880	Cucumber (Gy14) v1	cgywmB479
Cla021088	Lsi05G022080	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021088	CsGy3G007380	Cucumber (Gy14) v2	cgybwmB217
Cla021088	MELO3C005958.2	Melon (DHL92) v3.6.1	medwmB447
Cla021088	CsaV3_3G007360	Cucumber (Chinese Long) v3	cucwmB239
Cla021088	Bhi01G000439	Wax gourd	wgowmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021088	Silver-seed gourd	carwmB0094
Cla021088	Silver-seed gourd	carwmB0130
Cla021088	Cucurbita maxima (Rimu)	cmawmB242
Cla021088	Cucurbita maxima (Rimu)	cmawmB799
Cla021088	Cucurbita moschata (Rifu)	cmowmB231
Cla021088	Cucurbita moschata (Rifu)	cmowmB793
Cla021088	Cucurbita pepo (Zucchini)	cpewmB613
Cla021088	Cucurbita pepo (Zucchini)	cpewmB845