Cucsa.259880 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGGGGgTTGTGATTTGTTAAAGAGCTCCGATCCATTGTTTGCATAGGTTCTTGAAATCCCCAATTCCCACAAATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTCCTCCATCTTCACCGGCCCTAATTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTAATTTTTTTTTTTtCATTCTTCCATTTCTGCGTTTCTCTCTACCTTCTAATTTCACCACATTCATCATTCAACCTCTCCACTCTTTTCTGCATATTTTCATTTCTCCTCATTTTTGCCTTTTTAACTCAATCACGGTTCATGTTCTTATTCAATTTCATTTCTTCTGGGATATAACTGTTTATAATGTGGCCAACGGCAGACTGCTATTTATTATATTGAAACTATCCTGCGTTTGGGACTCATGATTTCTTTTCCTGCCTTAGGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGTATATATATCTCTCCCTCTCCGACCATCTTCCTAATGAAATGCTATCAACATGTTGTTACTTTATTTCTTCTGTTTACTAGCACATTAATTGATGGAAAAAAAAaCTTTAGGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGTGAAGTACACCGAATGCTTGTACTGTCTCTCCGATGTCTTTCTTTCTGTACTAATACTGCTTTTAGTTTAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGTATTGTTGTCCCCAACACTCACTTATGTTGTCTTTTGTTTAATATTGTTTCCTTGGATCCTATCCTATAAATCTAGGTTCATCTCCTTTATCAGTATTGTTAGTGTGGATTCTGTTGCCTGTAAACTATATATTGCACTTAGGAGCTGTTTGGAGAGCTAATTTACTGGGTATCAGAGGAGTATTGGGTATCATGAATTTATCAAGGTGATGCAGACAATTGGCTGTTAATTGCTATGGTATAATGTATTATTGGGATGTGTAGGAATGGAGGAGATAAACACTGAGATAAGAATTTAGAAAAAACTTGTCCCAAAATGGAAAAAGAAAACGAAACATTTAAGAAGTGCAGTTATTACCGGTAAATAAGAAATATATGGCTTGAGGATTCAATAGTCAATGATGTGGCGGTGATCACATTCTGGTTCAATTGCCCAAAATAAACAGTAGGTTCCCAATTATATTTCCCTTCATTCCAAATAGGCAGACTAGTGCTCGAACCAACTCCAAGAGCATTGGGATGGAATCATCTACTGTTTGTGGTAGAAACTTGTTGACGAAAGCTCTTTTCTGTGGCTTGAATGTCGCTCAATGTTTGCAAAGCACTCCTTTGATATTTATGGCTGATAAAAAaCAACAGAATTTTTTAAGAGAAATATGAGTGAACAGATTTGTTGGATTTAGTACATCTCCATATTTTCTTTCTTTAATTACTCTGAGTTTCCATCTACAGCTAGTTGGGAATCACTGTTGAATCTCCTTGGCTTGGGCTGGGGGACACGTCACAGTCTTTGGTGCACTTTTCTAATCAATTGGAGTTCACCATTTCCTAATATAAAAAGAAAAGGAGAATTTGACTGAGGAAAACAAAATCTGTAAGACTTAAGATAAAATGAATACCTTTAATGGAAACCTGGATTTTCTGAAAATAGGGGTTGAAACATCTTTTAGTTTCTAAGGTTTTGCTTCTTTTCTTGAAGAATTGGTGGCATTACAACCCTATTAATGGTCGTTGTCATAATCTTCTACCGAAGCTCAAAGGTTTTAAGTTGGCTTTTAAAGCATGGAACTCCACCTTTGGGCTTTGGCTGTCTCTCTTATATGAAAATTAATCTCCAGAAGACCCTAGCGACCCTCGATGTTGTGGAAGATCAATGGTCTCTTGATCCCCCATCTTTTCAAAAGCACACTGAAATTAGCGAAGTTTTTCAAGTCCAAGTAGTTGTTTGAGTGATGAAGCTCAACTTATTTCAATCAAATCATGGCTAGTAAGCAATAGTAGGAAAAACATCATCTTGATCCTTGGTAAATATAGGTTCAATAATTTAAATGACAAAGAAATAGAAAATTACAAAGAAATAGAAGAGCTACCGAGAAAGCCGGTTTGAGATTCACACCACACGCAAAATAGTTGGGGATTACAAACCAAACACTCTTATTAGATGTTTATACAAGATTTTAGCAATAGTTTTCACTTAAAAGTTGAAGAAAGCTCTTCCTTATACCATAACTAAATTCCAATCAGCCTTTGTGGAAAATAAGATAAATCATAGGTACTTCACTTATTGCAAATTAGCTTACCGATGAATGAGGGAGCAAAGCAAAAGTAGGATTGAATGACGTGAATGATGGAGAACCTAGTCTTTCTTTTTTtAAAAGGGGACGGCCTCTTACTAGTATAATAATAATGTGACAAAAGCTCATAGTACAATTATACAATGAGCATGTAACCATGGATTAGGAGGTGCACCTGGGCTTCTCAACTAGGTTGACATCCCTATGGCACCCTCATCATATTCAAACAAGCTAAAAACCAAAACAAAAGAGTAATGTCCAAAAGCAAAACGAAACCAAAAGAAGTACAAAGAAATACAAATCAAAAGAGGAATGTCTCAAGATCCTTGGTGAAGGAACACCACGAGGAGGCTAAAAGTTGATGACTCCATTGAAGTGTTATGCTGAGAAGCTTGCTCGAAAAAAAATCTCTAGGATCTTCCCAAACACAATTCTGATAACGATGCAAACAAGTTGAGAATAAGCAATCAAAACCAAGTTCTGTGAAGAGTCACTAGCGGCTGAGCAAAAGTGCAGATTGAAGGAGACAAACAGTGACCAAAAGCCATTTTCCAAATTAGATTAACAATTCGACGTAGACTTCTGTAATCCCATCGAATTTTTCCCACTTTAATTTAGAGGAATGAATTAACTCAAAAAATTTCCAACCGGAGCCAACGACCACTAACTTTAGTTGATTATAACCCTTTCTTTCCAGTGTGACTAAAGTTGGCTTTCCTACCCTTCTTTCCTTCACTTCTTTTGTAGGTTCAATGATCTATGAAATTGGTCGGTTTCTTATTGAAAAATAAAaTAATAATATCTTGTATCAGCAGATCTATACTTTTCTATTTGGATTGGTCACGTATAATGACGTATCCTAATCGAACAAAATATGAATATGGAAAATTGATATATATTTTTTTtAATGTTTTCTTTAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGGTAAAGTGGTGAATATTGTCATGTTTTTTAACATTGGGATGATAGTAAATGCAGCAATCCAGTCGTGTGTTGTTTTTAGAAACAATAGTCTGACATTTTACTTCCTTTATTTGACGCAGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGAGGATGTGCTTCAGGTACGGAAAAATAATCTGGGAGAGCCCCTTAGGGAATTTTTTCTTTGACGGATAACAAAATTGCTATCAAACAAAGATATTTATTTCTGTTGAAGTGGAAGAGAGCCGCAATCAACTTAGAAATGGAGGGTTGCATCCTCAAAACATGGTCACGGAATTAGGTGAAAAGAGAGATACCACCGTTCCTAATGAGAAGGGTTCAGTTGAAGGCGATGATGCTTTTGACATTATATGTTTTTAACAACCTTATCAGAATCATCCTCACATATTGAATTCAC GGGGGGTTGTGATTTGTTAAAGAGCTCCGATCCATTGTTTGCATAGGTTCTTGAAATCCCCAATTCCCACAAATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTCCTCCATCTTCACCGGCCCTAATTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGAGGATGTGCTTCAGGTACGGAAAAATAATCTGGGAGAGCCCCTTAGGGAATTTTTTCTTTGACGGATAACAAAATTGCTATCAAACAAAGATATTTATTTCTGTTGAAGTGGAAGAGAGCCGCAATCAACTTAGAAATGGAGGGTTGCATCCTCAAAACATGGTCACGGAATTAGGTGAAAAGAGAGATACCACCGTTCCTAATGAGAAGGGTTCAGTTGAAGGCGATGATGCTTTTGACATTATATGTTTTTAACAACCTTATCAGAATCATCCTCACATATTGAATTCAC ATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTCCTCCATCTTCACCGGCCCTAATTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGA MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD*
BLAST of Cucsa.259880 vs. Swiss-Prot
Match: YQGF_NOCSJ (Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.5e-12 Identity = 51/142 (35.92%), Postives = 75/142 (52.82%), Query Frame = 1
BLAST of Cucsa.259880 vs. Swiss-Prot
Match: YQGF_ECO5E (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yqgF PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
BLAST of Cucsa.259880 vs. Swiss-Prot
Match: YQGF_ECO57 (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 GN=yqgF PE=3 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 1.7e-11 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
BLAST of Cucsa.259880 vs. Swiss-Prot
Match: YQGF_ANADE (Putative pre-16S rRNA nuclease OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=Adeh_1232 PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 4.8e-11 Identity = 45/130 (34.62%), Postives = 74/130 (56.92%), Query Frame = 1
BLAST of Cucsa.259880 vs. Swiss-Prot
Match: YQGF_NITWN (Putative pre-16S rRNA nuclease OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=Nwi_2004 PE=3 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.1e-10 Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 1
BLAST of Cucsa.259880 vs. TrEMBL
Match: A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1) HSP 1 Score: 476.5 bits (1225), Expect = 1.9e-131 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1
BLAST of Cucsa.259880 vs. TrEMBL
Match: A0A0R0KEA6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 6.7e-76 Identity = 147/213 (69.01%), Postives = 174/213 (81.69%), Query Frame = 1
BLAST of Cucsa.259880 vs. TrEMBL
Match: A0A0B2QT40_GLYSO (Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 6.7e-76 Identity = 147/213 (69.01%), Postives = 174/213 (81.69%), Query Frame = 1
BLAST of Cucsa.259880 vs. TrEMBL
Match: A0A0L9VR24_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 9.6e-75 Identity = 142/186 (76.34%), Postives = 161/186 (86.56%), Query Frame = 1
BLAST of Cucsa.259880 vs. TrEMBL
Match: A0A0S3SXV5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=3 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 9.6e-75 Identity = 142/186 (76.34%), Postives = 161/186 (86.56%), Query Frame = 1
BLAST of Cucsa.259880 vs. TAIR10
Match: AT1G12244.1 (AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein) HSP 1 Score: 265.0 bits (676), Expect = 4.4e-71 Identity = 126/180 (70.00%), Postives = 155/180 (86.11%), Query Frame = 1
BLAST of Cucsa.259880 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus]) HSP 1 Score: 476.5 bits (1225), Expect = 2.7e-131 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1
BLAST of Cucsa.259880 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo]) HSP 1 Score: 449.1 bits (1154), Expect = 4.7e-123 Identity = 221/235 (94.04%), Postives = 226/235 (96.17%), Query Frame = 1
BLAST of Cucsa.259880 vs. NCBI nr
Match: gi|778676650|ref|XP_011650631.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus]) HSP 1 Score: 397.5 bits (1020), Expect = 1.6e-107 Identity = 195/196 (99.49%), Postives = 196/196 (100.00%), Query Frame = 1
BLAST of Cucsa.259880 vs. NCBI nr
Match: gi|778676652|ref|XP_011650632.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus]) HSP 1 Score: 364.8 bits (935), Expect = 1.2e-97 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1
BLAST of Cucsa.259880 vs. NCBI nr
Match: gi|356506432|ref|XP_003521987.1| (PREDICTED: putative pre-16S rRNA nuclease [Glycine max]) HSP 1 Score: 292.0 bits (746), Expect = 9.6e-76 Identity = 147/213 (69.01%), Postives = 174/213 (81.69%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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