Lsi05G022080 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G022080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Holliday junction resolvase-like protein
Location	chr05 : 28653660 .. 28659211 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTAAAGTATTATCTATGTGATAGTTTAGATATTAAATATTCGTATTGAATAAGAAAAAAATGAAATAGATAACTTTCTAATTGAATGCAAATTTACCGACGACGATTAGGGCGATGACAAATCTAAGAGGGAAGAAGAAGATGGAGAGAGAATATATATATATATATGTTGGTGCTCCAATCTCGTCTGCATTAAGCTTCATTGCGTGTGCTCGGTGGCCTTAACCCCTGACCTACTTTTCTCTAGTCTGGTCTCGATATCTCCGAAGCTAACATGCGTAAGAGATTCTTGCACCAATATAGTGTTGAGCCTACTGCACTATGATGTGTTAAGTTAATATAAGGAGTGACTAATTCAGCTAAGCACGAAATCGAAGGTCGAGTTTCTCCTTTTGATTATTTACTCTCTCATTTGGGGTGGTCGAATGGAGCTATTCATAAGCCTGTCATTTGACACAGGACAACAGTTACGTGTGACGACAGGAGTGTCAGGGACGTCTTTAGGTGCTTGGGTTTGTAGGGTGCTAGTCTGACCTTGGTTCGTTTATTTTCTTATTATTATATATTTACCAACTCGAGTGGTCGACTCAAACTCTGAAGCACTGACATTGTCCTTTTAGGACATGATAGAAATATCAATGTTTTAATTTTACGAAAATTTCGATGGATATTTCTAGAAAAATTATAAAAACAAAAATTCAAAAAATAAATTTATACTAGTAAACAAACATTTAATGATTTTTAAACAAGTTCGCATATCTATTATTTGTATTATATTTACATTGGTGACATGTTGTTACTTATTTTTTATTTTTCTTGGACTTTTCTACGATATAATGGAAATATCAATCCACCCCTAACGTTGATGCCGAACCCGATAGAAAGGTAGAAATATCGATATAAATATCAACATGTGAACAAAAATTTAACAATATATATAATAGTAATAATAGTTAAAACAAAATTTGTCTATATATAAGAAATAGGTGTCACGTCAATTGTTTTTATTAGTAATTAATGGAGGAGAGATCTAGGATGCTACCAATACCAAAACCCATACATAAAGTTGTTGATTTTTCTCGTTAGTATAGTGATCAATTAGTTTGAAGTTTTCATGAGTTCGAAAAGAACTAATTTTAAAACAAATTATATAGATATCCTTATTTTTTTCATATAAATTCTCTCATTTTTCTCTTATTTTTTCAACTCTTACACCAATTTTCAACGGAATCAAAATAAAAACCAAAATTTTAAGTCAAAACATACCATTCCACAAAATCTCACAAAATTTCAAAATCAAAATCTCTCCTTAAAACATACCATTATGATAAATAGTCAAATAAAAAAAATGTAGTTAGCTATTAACACATGTACAACTACCAACGTACAATTTTGTTATAAAATTTAAGTCCTAAAATTTCTTGGTAGTTTCGTTTTTTTTTTTTTTTATAGTTCATAACTTTAACTCAAGTGTGCAGTTTTATTTATTAATTTTATTTTTAGATGAATAAATGTTAAACAGTTAATAAAAAGGGGAGTAAAAGAAATTTGGGGAAGGAGAAGAACAAGGGAAAATAGAGAAGTAGGGTATTTAGTTTAAGGGTTTTTTTTTTTTTTTTTTTTTTTTATTTTAGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTATAGTTCATAACTTTAACTCAAGTGTGCAGTTTTATTTATTAATTTTATTTTTAGATGAATAAATGTTAAACAGTTAATAAAAAGGGGAGTAAAAGAAATTTGGGGAAGGAGAAGAACAAGGGAAAATAGAGAAGTAGGGTATTTAGTTTAAGGGTTTTTTTTTTTTTTTTTTTTTTTTAATTTAGGATTTTTTATATACAAAATACTAAGTGTTTTTTAATTTTTTAATTTTTTTTTTTAAAATTTAAGAATATTTTTGACAGAAAATACAAGTATATTTTGTATAATTTAGTTTAGGTTTTAATATAAAGACGTAATCCAAAAAATGAGTATTTTGGCGCGGCCGCGCGGGTTGTGATGTGCGAAACAGCGGCACCGTGACTGTGAGTGCGGAGCTTCTTCTTCTATCGTGTTGGTTGGAAATAATGCGTGCGCAAAGTTTCCAACCCTTTCCGCTGCAAAGCCACAATCTTCAGTCTCCGACGATTTTCTGTCTTCCACCAGCCCCTTCCTCTCTTGCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCAGAAGCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCAGTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTATTTTTTCTGCTACTTACACTTTATTTTATTTCATTTTTCCCTCTCTGCATTTTTCTGTTGCCTGTTTTCCTAGATGCATGCTTTAGATGATCGATGTTCTTATTGAATTTCATTTCTTCTAAGGCATAAGTGTTTATAATGTGCCGAACGGCAGACTGCTATTCAATTATGTTTTACACAGTCCACCACGCTTTTTTTACTCGGCTGGTTTTGTGTTATACCTGTATATTCAAATTATAAACAGTTTCCGGCATTTAACTCAGTGTTCTGTGTTATCATACGTTTGGGACTCATGATTCTTTATCTGGCTTAGGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGTATACATCTCTCCCTCTCTGACGATCTTGCGAATGAAATGTTATGAACATGTTGGAACTATATTTCTTCTCTTTACTTACACATTAATTGATGGAAAAAAACCGTAGGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACGCCTCAGTCAAACAAAATTCGAAGTATTGCCGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGTGAAATACACCGAATGGTTGTACTTTGTCTCTCCTATGTCTTCCTTTCTGTTCTGATACTGCTTTTAGTTTAGGGGCTGGAGAGTTTACTTGCATGATGAACACGGGACAACAGCAGAAGCGGAAAGCCATATGATTTCCAAGTATTGTTGTCCTCAACACTCACTTATGTTGTCTTTTGTTTAATATTGTTTCCGTGGATTCTATCCTATAAAATTTCATGCATCTCCTTTATTAGTATTGTCAGTGTGGATTCTGTATCCTGTAAATTATGTTGCACTTAATGAATTGTCATTCAACATAGTGCCATATTGATTTATTCATTTCCTTTGAGGATTTTGTTGACATAGATTTTAGGGGTCTGTAGATATGATTGACTACCATGTGAAGATTCTTAGACTAATGGCGCACTGCAATTAAAAAAAACAAAAAAAAACTGATGTTAATCTTTATTCTCTACCATATTTTGGCATTAACTTCATTAATTAAGGTGATGCAGACAATTGGTTGCTAATTGCTATGGTATTATTGGGATGGGTAGGAATGGAGGAGATGAACACTGAGATGAAGAAGGTAGGAAAAGCTTTTCCCAAAATGAAAATAAAATCTAAGAAGCGTGATAATGTAATCTAAGAGATAAAATGAGAACTCTCTCCAAGAATCAAATTAAAGTCTTTATTATCAATTAAAAGTTATCAATACAAGAAGACAATTCCTCTATTTATAGAGAATTGGAAAGCAAACTAATCCTAATCCTAATTAATCAAAGAAACTAATCCTAATTCTAATAAACCAAGAAAACTAATCCTAATCCTAATCACTCAAGGAAACTAATCATAATCCTAATCTATTAAGGATTTGACCAAGGTACCTAATTTACCATAATCCTACCACATTTTGTTTTAATTGCACAAAAAAAAATGGTTAGTTGCCAACTACATTTCTCTGCATTCCTAATATGCAGACTAGTGCTCAGACCAACTCGCAAGGATTTATGAGGCCTGGATTTTAACAAGAGCATTGGATTCCAATCATCTAAAGTTTGTGGTATAAAGTTGTTGACCAAAGCTCTTACTCTGTGGCTTGATGCTTGCAAAGTTCTCCTTTGCTATTTATCGCTGGATAAAAAACAACAGAATTTTTAAAGAAAAATGTAAGGAGTGAACAGATTTGTTGGTTTTAGTGCATCCTCTTGGAGCTCCATCTCCCTACACATTTTTTTTCTTTTTTAATTACTCTGATTTTCTATCTACAGCTAGTTGCGAACCATTGTTGAATCTCCTTGGCTTGGGCTGGAGAATGCCTCACTGTCTTTGGTGCACTCTTCTAATCAACTGGAGTTCACCATTTCCTATTATAAAAAGAAAAGGCGAATTTGACAAAGGCAAACAAAATCTGTAAGAGAAAATGATTACCTTTGATGGAAACTTGGACTTTTTATTGCAATCGAGAAAATATGGGTTGAAACATCTTATAGTTCCTAATATTTTGTTGCAACGTCCATCTTTTGCTTCTTTTCAGAATTGGTGGCATAACAACCCTATTAGTGGTCGTGGTCACAGTCTTCTACCGAAGCTCAAAGGTTTTAAGTTGGCTCTTAAAGCATGGAAATCCTCCACCTTTAATCGTCTTTCTGATGTGAAAACTAATCTCTAGAAAACCCTAGCTACCCTCGATTTTTTGGAAGAACAAGGATCTCTAGATTCTCCATCTTTTCAAAAGCACAATGAAATTAGAGCCGGGCCTTTTAAGTCCAAGCACAACTTATTTCAATCACATCATGGCTGTTAAGCTTAGGAAAAGCACCATCGTTGGGATCCTTGGTAAATATAGGTTCAACATTTTAAATGACAAAGAACTAGAAGAGGACATCGTTGATTTTTATAAACAGCTATATACCAAGAAAGCCCTATTACTATCGAAGGGTGCATCTCCTCCCCTATTTCTCCATCATCATCAACGACAAGTCACAAGGCTTGAGGAAAGATCCTAG

mRNA sequence

ATGATATTTTGGCGCGGCCGCGCGGGTTGTGATGTGCGAAACAGCGGCACCGTGACTGTGAGTGCGGAGCTTCTTCTTCTATCGTGTTGGTTGGAAATAATGCGTGCGCAAAGTTTCCAACCCTTTCCGCTGCAAAGCCACAATCTTCAGTCTCCGACGATTTTCTGTCTTCCACCAGCCCCTTCCTCTCTTGCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCAGAAGCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCAGTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGTATACATCTCTCCCTCTCTGACGATCTTGCGAATGAAATGTTATGAACATGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACGCCTCAGTCAAACAAAATTCGAAGTATTGCCGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGGGCTGGAGAGTTTACTTGCATGATGAACACGGGACAACAGCAGAAGCGGAAAGCCATATGATTTCCAAACAATTGGTTGCTAATTGCTATGCTAGTTGCGAACCATTGTTGAATCTCCTTGGCTTGGGCTGGAGAATGCCTCACTGTCTTTGGTGCACTCTTCTAATCAACTGGAGTTCACCATTTCCTATTATAAAAAGAAAAGGCGAATTTGACAAAGGCAAACAAAATCTAATTGGTGGCATAACAACCCTATTAGTGGTCGTGGTCACAGTCTTCTACCGAAGCTCAAAGATTCTCCATCTTTTCAAAAGCACAATGAAATTAGAGCCGGGCCTTTTAAGTCCAAGCACAACTTATTTCAATCACATCATGGCTGTTAAGCTTAGGAAAAGCACCATCGTTGGGATCCTTGGTAAATATAGGTTCAACATTTTAAATGACAAAGAACTAGAAGAGGACATCGTTGATTTTTATAAACAGCTATATACCAAGAAAGCCCTATTACTATCGAAGGGTGCATCTCCTCCCCTATTTCTCCATCATCATCAACGACAAGTCACAAGGCTTGAGGAAAGATCCTAG

Coding sequence (CDS)

ATGATATTTTGGCGCGGCCGCGCGGGTTGTGATGTGCGAAACAGCGGCACCGTGACTGTGAGTGCGGAGCTTCTTCTTCTATCGTGTTGGTTGGAAATAATGCGTGCGCAAAGTTTCCAACCCTTTCCGCTGCAAAGCCACAATCTTCAGTCTCCGACGATTTTCTGTCTTCCACCAGCCCCTTCCTCTCTTGCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCAGAAGCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCAGTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGTATACATCTCTCCCTCTCTGACGATCTTGCGAATGAAATGTTATGAACATGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACGCCTCAGTCAAACAAAATTCGAAGTATTGCCGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGGGCTGGAGAGTTTACTTGCATGATGAACACGGGACAACAGCAGAAGCGGAAAGCCATATGATTTCCAAACAATTGGTTGCTAATTGCTATGCTAGTTGCGAACCATTGTTGAATCTCCTTGGCTTGGGCTGGAGAATGCCTCACTGTCTTTGGTGCACTCTTCTAATCAACTGGAGTTCACCATTTCCTATTATAAAAAGAAAAGGCGAATTTGACAAAGGCAAACAAAATCTAATTGGTGGCATAACAACCCTATTAGTGGTCGTGGTCACAGTCTTCTACCGAAGCTCAAAGATTCTCCATCTTTTCAAAAGCACAATGAAATTAGAGCCGGGCCTTTTAAGTCCAAGCACAACTTATTTCAATCACATCATGGCTGTTAAGCTTAGGAAAAGCACCATCGTTGGGATCCTTGGTAAATATAGGTTCAACATTTTAAATGACAAAGAACTAGAAGAGGACATCGTTGATTTTTATAAACAGCTATATACCAAGAAAGCCCTATTACTATCGAAGGGTGCATCTCCTCCCCTATTTCTCCATCATCATCAACGACAAGTCACAAGGCTTGAGGAAAGATCCTAG

Protein sequence

MIFWRGRAGCDVRNSGTVTVSAELLLLSCWLEIMRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQLVANCYASCEPLLNLLGLGWRMPHCLWCTLLINWSSPFPIIKRKGEFDKGKQNLIGGITTLLVVVVTVFYRSSKILHLFKSTMKLEPGLLSPSTTYFNHIMAVKLRKSTIVGILGKYRFNILNDKELEEDIVDFYKQLYTKKALLLSKGASPPLFLHHHQRQVTRLEERS

Homology

[Close]

BLAST of Lsi05G022080 vs. Swiss-Prot
Match: YQGF_NOCSJ (Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.4e-07
Identity = 45/125 (36.00%), Postives = 63/125 (50.40%), Query Frame = 1


Query: 100 RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEVYISPSLT 159
           R G  +G+D G +R G+A S   GF   P+ TV   +G    +  I  AE++       T
Sbjct: 2   RAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEED----EGAT 61

Query: 160 ILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTT 219
           +L          E ++GLP+S  G+E P + K+R  AGR+AAR A     V L DE  TT
Sbjct: 62  VL----------EVVVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTT 110

Query: 220 AEAES 222
             AE+
Sbjct: 122 VSAEA 110

[Close]

BLAST of Lsi05G022080 vs. TrEMBL
Match: A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.6e-64
Identity = 145/194 (74.74%), Postives = 149/194 (76.80%), Query Frame = 1


Query: 37  QSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQ--KPISSIELPPNALRRK 96
           Q+FQ FPLQ+H L       LPP        P SP LI K     PISSIELPPNALRRK
Sbjct: 13  QAFQ-FPLQTHKLLHSLHPHLPP--------PSSPALISKSHNNNPISSIELPPNALRRK 72

Query: 97  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPS 156
           LDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQE      
Sbjct: 73  LDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQE------ 132

Query: 157 LTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHG 216
                      EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHG
Sbjct: 133 -----------EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHG 180

Query: 217 TTAEAESHMISKQL 229
           TTAEAESHMIS+ L
Sbjct: 193 TTAEAESHMISRGL 180

[Close]

BLAST of Lsi05G022080 vs. TrEMBL
Match: A0A0L9VR24_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.2e-49
Identity = 104/148 (70.27%), Postives = 116/148 (78.38%), Query Frame = 1


Query: 85  ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEI 144
           ELPPNALRRK +PQWRGGFSLG+DLG +RTGLALSKGFS RPLTVLELRGQKLEV++I I
Sbjct: 50  ELPPNALRRKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINI 109

Query: 145 AEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERG 204
           AEQE                 E DEFIIGLPKS DGKETPQSNK+RS+AGR+A +AAERG
Sbjct: 110 AEQE-----------------EVDEFIIGLPKSADGKETPQSNKVRSVAGRLAVQAAERG 169

Query: 205 WRVYLHDEHGTTAEAESHMISKQLVANC 233
           WRVYL DEHGTT+EA   MI+  L  +C
Sbjct: 170 WRVYLQDEHGTTSEAMDRMINMGLSKSC 180

[Close]

BLAST of Lsi05G022080 vs. TrEMBL
Match: A0A0S3SXV5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.2e-49
Identity = 104/148 (70.27%), Postives = 116/148 (78.38%), Query Frame = 1


Query: 85  ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEI 144
           ELPPNALRRK +PQWRGGFSLG+DLG +RTGLALSKGFS RPLTVLELRGQKLEV++I I
Sbjct: 50  ELPPNALRRKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINI 109

Query: 145 AEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERG 204
           AEQE                 E DEFIIGLPKS DGKETPQSNK+RS+AGR+A +AAERG
Sbjct: 110 AEQE-----------------EVDEFIIGLPKSADGKETPQSNKVRSVAGRLAVQAAERG 169

Query: 205 WRVYLHDEHGTTAEAESHMISKQLVANC 233
           WRVYL DEHGTT+EA   MI+  L  +C
Sbjct: 170 WRVYLQDEHGTTSEAMDRMINMGLSKSC 180

[Close]

BLAST of Lsi05G022080 vs. TrEMBL
Match: A0A0R0KEA6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.4e-48
Identity = 110/178 (61.80%), Postives = 128/178 (71.91%), Query Frame = 1


Query: 57  LPPAPSSLAPLPPSPTLI------CKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLG 116
           LPP    L   P +P+ +      C+  K ++  ELPPNALR+K +PQWRGGFSLG+DLG
Sbjct: 9   LPPHKPFLRCSPSNPSFVNGKNGYCRV-KALTLDELPPNALRKKREPQWRGGFSLGLDLG 68

Query: 117 TSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEF 176
            +RTGLALSKGFS RPLTVLELRGQKLEV++I IAE+E                 E DEF
Sbjct: 69  LARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEE-----------------EVDEF 128

Query: 177 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL 229
           IIGLPKS DGKETPQSNK+RS+AGR+A RAAERGWRVYL DEHGTT EA+  MI+  L
Sbjct: 129 IIGLPKSSDGKETPQSNKVRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSL 168

[Close]

BLAST of Lsi05G022080 vs. TrEMBL
Match: A0A0B2QT40_GLYSO (Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.4e-48
Identity = 110/178 (61.80%), Postives = 128/178 (71.91%), Query Frame = 1


Query: 57  LPPAPSSLAPLPPSPTLI------CKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLG 116
           LPP    L   P +P+ +      C+  K ++  ELPPNALR+K +PQWRGGFSLG+DLG
Sbjct: 9   LPPHKPFLRCSPSNPSFVNGKNGYCRV-KALTLDELPPNALRKKREPQWRGGFSLGLDLG 68

Query: 117 TSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEF 176
            +RTGLALSKGFS RPLTVLELRGQKLEV++I IAE+E                 E DEF
Sbjct: 69  LARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEE-----------------EVDEF 128

Query: 177 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL 229
           IIGLPKS DGKETPQSNK+RS+AGR+A RAAERGWRVYL DEHGTT EA+  MI+  L
Sbjct: 129 IIGLPKSSDGKETPQSNKVRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSL 168

[Close]

BLAST of Lsi05G022080 vs. TAIR10
Match: AT1G12244.1 (AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-46
Identity = 92/140 (65.71%), Postives = 110/140 (78.57%), Query Frame = 1


Query: 85  ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEI 144
           E+PPNA+RRK+D  WRGGFSLGVDLG SRTG+A+SKG++ +PLTVL+ RGQKLE +L+EI
Sbjct: 64  EIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRLLEI 123

Query: 145 AEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERG 204
           AE+E                 EADEFIIGLP+S DGKET QSNKIRS+AGR+A +AAERG
Sbjct: 124 AEEE-----------------EADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERG 183

Query: 205 WRVYLHDEHGTTAEAESHMI 225
           WRVY+ DEHGTT+EA   MI
Sbjct: 184 WRVYVFDEHGTTSEASDRMI 186

[Close]

BLAST of Lsi05G022080 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 3.7e-64
Identity = 145/194 (74.74%), Postives = 149/194 (76.80%), Query Frame = 1


Query: 37  QSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQ--KPISSIELPPNALRRK 96
           Q+FQ FPLQ+H L       LPP        P SP LI K     PISSIELPPNALRRK
Sbjct: 13  QAFQ-FPLQTHKLLHSLHPHLPP--------PSSPALISKSHNNNPISSIELPPNALRRK 72

Query: 97  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPS 156
           LDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQE      
Sbjct: 73  LDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQE------ 132

Query: 157 LTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHG 216
                      EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHG
Sbjct: 133 -----------EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHG 180

Query: 217 TTAEAESHMISKQL 229
           TTAEAESHMIS+ L
Sbjct: 193 TTAEAESHMISRGL 180

[Close]

BLAST of Lsi05G022080 vs. NCBI nr
Match: gi|778676650|ref|XP_011650631.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 3.7e-64
Identity = 145/194 (74.74%), Postives = 149/194 (76.80%), Query Frame = 1


Query: 37  QSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQ--KPISSIELPPNALRRK 96
           Q+FQ FPLQ+H L       LPP        P SP LI K     PISSIELPPNALRRK
Sbjct: 13  QAFQ-FPLQTHKLLHSLHPHLPP--------PSSPALISKSHNNNPISSIELPPNALRRK 72

Query: 97  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPS 156
           LDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQE      
Sbjct: 73  LDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQE------ 132

Query: 157 LTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHG 216
                      EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHG
Sbjct: 133 -----------EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHG 180

Query: 217 TTAEAESHMISKQL 229
           TTAEAESHMIS+ L
Sbjct: 193 TTAEAESHMISRGL 180

[Close]

BLAST of Lsi05G022080 vs. NCBI nr
Match: gi|778676652|ref|XP_011650632.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 8.3e-64
Identity = 144/192 (75.00%), Postives = 148/192 (77.08%), Query Frame = 1


Query: 37  QSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPPSPTLICKCQ--KPISSIELPPNALRRK 96
           Q+FQ FPLQ+H L       LPP        P SP LI K     PISSIELPPNALRRK
Sbjct: 13  QAFQ-FPLQTHKLLHSLHPHLPP--------PSSPALISKSHNNNPISSIELPPNALRRK 72

Query: 97  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEVYISPS 156
           LDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQE      
Sbjct: 73  LDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQE------ 132

Query: 157 LTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHG 216
                      EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHG
Sbjct: 133 -----------EADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHG 178

Query: 217 TTAEAESHMISK 227
           TTAEAESHMIS+
Sbjct: 193 TTAEAESHMISR 178

[Close]

BLAST of Lsi05G022080 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 9.1e-63
Identity = 146/219 (66.67%), Postives = 154/219 (70.32%), Query Frame = 1


Query: 10  CDVRNSGTVTVSAELLLLSCWLEIMRAQSFQPFPLQSHNLQSPTIFCLPPAPSSLAPLPP 69
           C V  S    +   +  L C  +  + Q+FQ FPLQSH L       LPP      P PP
Sbjct: 24  CWVLESPIPPILPTMFTLLCG-QCFQFQAFQ-FPLQSHRLLHSLHPHLPP------PSPP 83

Query: 70  SPTLICKCQKPISSIELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTV 129
           +         P SSIELPPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFS RPLTV
Sbjct: 84  ALFSKSHNNNPFSSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTV 143

Query: 130 LELRGQKLEVKLIEIAEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKI 189
           LELRGQKLE KLI+IAEQE                 EADEFIIGLPKSCDGKETPQSNKI
Sbjct: 144 LELRGQKLEAKLIQIAEQE-----------------EADEFIIGLPKSCDGKETPQSNKI 203

Query: 190 RSIAGRVAARAAERGWRVYLHDEHGTTAEAESHMISKQL 229
           RSIAGRVAARAAERGWRVYL+DEHGTTAEAESHMISK L
Sbjct: 204 RSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL 217

[Close]

BLAST of Lsi05G022080 vs. NCBI nr
Match: gi|920718308|gb|KOM57505.1| (hypothetical protein LR48_Vigan11g053800 [Vigna angularis])

HSP 1 Score: 203.4 bits (516), Expect = 7.5e-49
Identity = 104/148 (70.27%), Postives = 116/148 (78.38%), Query Frame = 1


Query: 85  ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEI 144
           ELPPNALRRK +PQWRGGFSLG+DLG +RTGLALSKGFS RPLTVLELRGQKLEV++I I
Sbjct: 50  ELPPNALRRKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINI 109

Query: 145 AEQEVYISPSLTILRMKCYEHEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERG 204
           AEQE                 E DEFIIGLPKS DGKETPQSNK+RS+AGR+A +AAERG
Sbjct: 110 AEQE-----------------EVDEFIIGLPKSADGKETPQSNKVRSVAGRLAVQAAERG 169

Query: 205 WRVYLHDEHGTTAEAESHMISKQLVANC 233
           WRVYL DEHGTT+EA   MI+  L  +C
Sbjct: 170 WRVYLQDEHGTTSEAMDRMINMGLSKSC 180

The following BLAST results are available for this feature:

BLAST of Lsi05G022080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YQGF_NOCSJ	5.4e-07	36.00	Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=N...	[more]

BLAST of Lsi05G022080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3L5_CUCSA	2.6e-64	74.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1	[more]
A0A0L9VR24_PHAAN	5.2e-49	70.27	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1	[more]
A0A0S3SXV5_PHAAN	5.2e-49	70.27	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=...	[more]
A0A0R0KEA6_SOYBN	4.4e-48	61.80	Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1	[more]
A0A0B2QT40_GLYSO	4.4e-48	61.80	Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1	[more]

BLAST of Lsi05G022080 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12244.1	1.7e-46	65.71	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Lsi05G022080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431960\|ref\|XP_004133768.1\|	3.7e-64	74.74	PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus]	[more]
gi\|778676650\|ref\|XP_011650631.1\|	3.7e-64	74.74	PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus]	[more]
gi\|778676652\|ref\|XP_011650632.1\|	8.3e-64	75.00	PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus]	[more]
gi\|659074761\|ref\|XP_008437782.1\|	9.1e-63	66.67	PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo]	[more]
gi\|920718308\|gb\|KOM57505.1\|	7.5e-49	70.27	hypothetical protein LR48_Vigan11g053800 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process
GO:0006364	rRNA processing

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR006641	YqgF/RNaseH-like_dom
IPR005227	YqgF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006364	rRNA processing
biological_process	GO:0031564	transcription antitermination
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G022080.1	Lsi05G022080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 104..228 score: 1.6
IPR006641	YqgF/RNase H-like domain	GENE3D	G3DSA:3.30.420.140		coord: 104..227 score: 8.1
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 102..219 score: 2.4
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 103..228 score: 5.46
None	No IPR available	unknown	Coil	Coil	coord: 383..397 scor
None	No IPR available	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 85..148 score: 2.4E-70coord: 166..225 score: 2.4
None	No IPR available	PANTHER	PTHR33317:SF2	HOLLIDAY JUNCTION RESOLVASE-RELATED	coord: 85..148 score: 2.4E-70coord: 166..225 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G022080	Csa3G116900	Cucumber (Chinese Long) v2	culsiB209
Lsi05G022080	CSPI03G07240	Wild cucumber (PI 183967)	cpilsiB207
Lsi05G022080	Cucsa.259880	Cucumber (Gy14) v1	cgylsiB415
Lsi05G022080	Cla021088	Watermelon (97103) v1	lsiwmB365
Lsi05G022080	MELO3C005958	Melon (DHL92) v3.5.1	lsimeB378
Lsi05G022080	ClCG05G000210	Watermelon (Charleston Gray)	lsiwcgB335
Lsi05G022080	MELO3C005958.2	Melon (DHL92) v3.6.1	lsimedB396
Lsi05G022080	Cla97C05G080180	Watermelon (97103) v2	lsiwmbB333
Lsi05G022080	Bhi01G000439	Wax gourd	lsiwgoB433
Lsi05G022080	CsGy3G007380	Cucumber (Gy14) v2	cgyblsiB196
Lsi05G022080	CsaV3_3G007360	Cucumber (Chinese Long) v3	cuclsiB228

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G022080	Cucurbita maxima (Rimu)	cmalsiB245
Lsi05G022080	Cucurbita maxima (Rimu)	cmalsiB766
Lsi05G022080	Cucurbita moschata (Rifu)	cmolsiB233
Lsi05G022080	Cucurbita moschata (Rifu)	cmolsiB758
Lsi05G022080	Cucurbita pepo (Zucchini)	cpelsiB506
Lsi05G022080	Cucurbita pepo (Zucchini)	cpelsiB714
Lsi05G022080	Silver-seed gourd	carlsiB088
Lsi05G022080	Silver-seed gourd	carlsiB119