CsGy3G007380 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G007380
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	putative pre-16S rRNA nuclease
Location	Chr3 : 6405709 .. 6410434 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATCCCCAATTCCCACAAATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTCCTCCATCTTCACCGGCCCTAATTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTAATTTTTTTTTTTTTTCATTCTTCCATTTCTGCGTTTCTCTCTACCTTCTAATTTCACCACATTCATCATTCAACCTCTCCACTCTTTTCTGCATATTTTCATTTCTCCTCATTTTTGCCTTTTTAACTCAATCACGGTTCATGTTCTTATTCAATTTCATTTCTTCTGGGATATAACTGTTTATAATGTGGCCAACGGCAGACTGCTATTTATTATATTGAAACTATCCTGCGTTTGGGACTCATGATTTCTTTTCCTGCCTTAGGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGTATATATATCTCTCCCTCTCCGACCATCTTCCTAATGAAATGCTATCAACATGTTGTTACTTTATTTCTTCTGTTTACTAGCACATTAATTGATGGAAAAAAAAAACTTTAGGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGTGAAGTACACCGAATGCTTGTACTGTCTCTCCGATGTCTTTCTTTCTGTACTAATACTGCTTTTAGTTTAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGTATTGTTGTCCCCAACACTCACTTATGTTGTCTTTTGTTTAATATTGTTTCCTTGGATCCTATCCTATAAATCTAGGTTCATCTCCTTTATCAGTATTGTTAGTGTGGATTCTGTTGCCTGTAAACTATATATTGCACTTAGGAGCTGTTTGGAGAGCTAATTTACTGGGTATCAGAGGAGTATTGGGTATCATGAATTTATCAAGGTGATGCAGACAATTGGCTGTTAATTGCTATGGTATAATGTATTATTGGGATGTGTAGGAATGGAGGAGATAAACACTGAGATAAGAATTTAGAAAAAACTTGTCCCAAAATGGAAAAAGAAAACGAAACATTTAAGAAGTGCAGTTATTACCGGTAAATAAGAAATATATGGCTTGAGGATTCAATAGTCAATGATGTGGCGGTGATCACATTCTGGTTCAATTGCCCAAAATAAACAGTAGGTTCCCAATTATATTTCCCTTCATTCCAAATAGGCAGACTAGTGCTCGAACCAACTCCAAGAGCATTGGGATGGAATCATCTACTGTTTGTGGTAGAAACTTGTTGACGAAAGCTCTTTTCTGTGGCTTGAATGTCGCTCAATGTTTGCAAAGCACTCCTTTGATATTTATGGCTGATAAAAAACAACAGAATTTTTTAAGAGAAATATGAGTGAACAGATTTGTTGGATTTAGTACATCTCCATATTTTCTTTCTTTAATTACTCTGAGTTTCCATCTACAGCTAGTTGGGAATCACTGTTGAATCTCCTTGGCTTGGGCTGGGGGACACGTCACAGTCTTTGGTGCACTTTTCTAATCAATTGGAGTTCACCATTTCCTAATATAAAAAGAAAAGGAGAATTTGACTGAGGAAAACAAAATCTGTAAGACTTAAGATAAAATGAATACCTTTAATGGAAACCTGGATTTTCTGAAAATAGGGGTTGAAACATCTTTTAGTTTCTAAGGTTTTGCTTCTTTTCTTGAAGAATTGGTGGCATTACAACCCTATTAATGGTCGTTGTCATAATCTTCTACCGAAGCTCAAAGGTTTTAAGTTGGCTTTTAAAGCATGGAACTCCACCTTTGGGCTTTGGCTGTCTCTCTTATATGAAAATTAATCTCCAGAAGACCCTAGCGACCCTCGATGTTGTGGAAGATCAATGGTCTCTTGATCCCCCATCTTTTCAAAAGCACACTGAAATTAGCGAAGTTTTTCAAGTCCAAGTAGTTGTTTGAGTGATGAAGCTCAACTTATTTCAATCAAATCATGGCTAGTAAGCAATAGTAGGAAAAACATCATCTTGATCCTTGGTAAATATAGGTTCAATAATTTAAATGACAAAGAAATAGAAAATTACAAAGAAATAGAAGAGCTACCGAGAAAGCCGGTTTGAGATTCACACCACACGCAAAATAGTTGGGGATTACAAACCAAACACTCTTATTAGATGTTTATACAAGATTTTAGCAATAGTTTTCACTTAAAAGTTGAAGAAAGCTCTTCCTTATACCATAACTAAATTCCAATCAGCCTTTGTGGAAAATAAGATAAATCATAGGTACTTCACTTATTGCAAATTAGCTTACCGATGAATGAGGGAGCAAAGCAAAAGTAGGATTGAATGACGTGAATGATGGAGAACCTAGTCTTTCTTTTTTTAAAAGGGGACGGCCTCTTACTAGTATAATAATAATGTGACAAAAGCTCATAGTACAATTATACAATGAGCATGTAACCATGGATTAGGAGGTGCACCTGGGCTTCTCAACTAGGTTGACATCCCTATGGCACCCTCATCATATTCAAACAAGCTAAAAACCAAAACAAAAGAGTAATGTCCAAAAGCAAAACGAAACCAAAAGAAGTACAAAGAAATACAAATCAAAAGAGGAATGTCTCAAGATCCTTGGTGAAGGAACACCACGAGGAGGCTAAAAGTTGATGACTCCATTGAAGTGTTATGCTGAGAAGCTTGCTCGAAAAAAAATCTCTAGGATCTTCCCAAACACAATTCTGATAACGATGCAAACAAGTTGAGAATAAGCAATCAAAACCAAGTTCTGTGAAGAGTCACTAGCGGCTGAGCAAAAGTGCAGATTGAAGGAGACAAACAGTGACCAAAAGCCATTTTCCAAATTAGATTAACAATTCGACGTAGACTTCTGTAATCCCATCGAATTTTTCCCACTTTAATTTAGAGGAATGAATTAACTCAAAAAATTTCCAACCGGAGCCAACGACCACTAACTTTAGTTGATTATAACCCTTTCTTTCCAGTGTGACTAAAGTTGGCTTTCCTACCCTTCTTTCCTTCACTTCTTTTGTAGGTTCAATGATCTATGAAATTGGTCGGTTTCTTATTGAAAAATAAAATAATAATATCTTGTATCAGCAGATCTATACTTTTCTATTTGGATTGGTCACGTATAATGACGTATCCTAATCGAACAAAATATGAATATGGAAAATTGATATATATTTTTTTTAATGTTTTCTTTAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGGTAAAGTGGTGAATATTGTCATGTTTTTTAACATTGGGATGATAGTAAATGCAGCAATCCAGTCGTGTGTTGTTTTTAGAAACAATAGTCTGACATTTTACTTCCTTTATTTGACGCAGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGAGGATGTGCTTCAGGTACGGAAAAATAATCTGGGAGAGCCCCTTAGGGAATTTTTTCTTTGACGGATAACAAAATTGCTATCAAACAAAGATATTTATTTCTGTTGAAGTGGAAGAGAGCCGCAATCAACTTAGAAATGGAGGGTTGCATCCTCAAAACATGGTCACGGAATTAGGTGAAAAGAGAGATACCACCGTTCCTAATGAGAAGGGTTCAGTTGAAGGCGATGATGCTTTTGACATTATATGTTTTTAACAACCTTATCAGAATCATCCTCACATATTGAATTCACCTACACATTGGTTAGTTAAGGATGGGATTTGCCTTGGTCCGTCCTATGCAATTGTGCTTGTCCTTGATCAGAAAAGTAGTGGAAGAAAAAAAGAAAGGATCTGCTGAATCTCGTATGTATCTACTTGGTTGAAATTATTTATAAACAAAGAAATTGATTTAAAAATGGTGCTTTGGTAAGTTAATACTGTGGTAAAGCGGAAGTCTTCCTAACTTCATATGCTTGGAGACTCTTCGTTGCTCATCTCATGGGTTGAAGTTAAACATGGCCCTAGTTTACTTTTACCATTAGATGCTAATTTTACTGGATCTCACGTAACGATAGCTAATTTTTACTGGGAGATCTATTTTATAAACAAAGATCTAAGGAATCTCTGAAATATCAATATACATCTTATATGGTTCATCGTTCATGGACAGGTAGAGATGGACCTAAACAATGGTAATAACAATTGCCTCCCTACACTCCATTTACATTTCTTAGAAGCTATAATCCACTTTTCCTTAGAAGAAAAATCCTTTGGACATTTGGTTGACGGTCACTATGAACACCTCTTTGCCCTCTTAGCAGAATTATCCAATCAAGGAAGAAAAAAAAAGAGAAAAGAACACCATCCATCACTTTTTTTTTTTTAAAAAAA

mRNA sequence

GAAATCCCCAATTCCCACAAATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTCCTCCATCTTCACCGGCCCTAATTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGAGGATGTGCTTCAGGTACGGAAAAATAATCTGGGAGAGCCCCTTAGGGAATTTTTTCTTTGACGGATAACAAAATTGCTATCAAACAAAGATATTTATTTCTGTTGAAGTGGAAGAGAGCCGCAATCAACTTAGAAATGGAGGGTTGCATCCTCAAAACATGGTCACGGAATTAGGTGAAAAGAGAGATACCACCGTTCCTAATGAGAAGGGTTCAGTTGAAGGCGATGATGCTTTTGACATTATATGTTTTTAACAACCTTATCAGAATCATCCTCACATATTGAATTCACCTACACATTGGTTAGTTAAGGATGGGATTTGCCTTGGTCCGTCCTATGCAATTGTGCTTGTCCTTGATCAGAAAAGTAGTGGAAGAAAAAAAGAAAGGATCTGCTGAATCTCGTATGTATCTACTTGGTTGAAATTATTTATAAACAAAGAAATTGATTTAAAAATGGTGCTTTGGTAAGTTAATACTGTGGTAAAGCGGAAGTCTTCCTAACTTCATATGCTTGGAGACTCTTCGTTGCTCATCTCATGGGTTGAAGTTAAACATGGCCCTAGTTTACTTTTACCATTAGATGCTAATTTTACTGGATCTCACGTAACGATAGCTAATTTTTACTGGGAGATCTATTTTATAAACAAAGATCTAAGGAATCTCTGAAATATCAATATACATCTTATATGGTTCATCGTTCATGGACAGGTAGAGATGGACCTAAACAATGGTAATAACAATTGCCTCCCTACACTCCATTTACATTTCTTAGAAGCTATAATCCACTTTTCCTTAGAAGAAAAATCCTTTGGACATTTGGTTGACGGTCACTATGAACACCTCTTTGCCCTCTTAGCAGAATTATCCAATCAAGGAAGAAAAAAAAAGAGAAAAGAACACCATCCATCACTTTTTTTTTTTTAAAAAAA

Coding sequence (CDS)

ATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTCCTCCATCTTCACCGGCCCTAATTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGA

Protein sequence

MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD

Homology

[Close]

BLAST of CsGy3G007380 vs. NCBI nr
Match: XP_004133768.1 (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus] >XP_011650630.1 PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus] >KGN56353.1 hypothetical protein Csa_3G116900 [Cucumis sativus])

HSP 1 Score: 471.9 bits (1213), Expect = 1.3e-129
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60
           MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180

Query: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 236
           NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD
Sbjct: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]

BLAST of CsGy3G007380 vs. NCBI nr
Match: XP_008437782.1 (PREDICTED: uncharacterized protein LOC103483114 isoform X1 [Cucumis melo])

HSP 1 Score: 444.5 bits (1142), Expect = 2.2e-121
Identity = 221/235 (94.04%), Postives = 226/235 (96.17%), Query Frame = 0


Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60
           MFT   GQCFQFQAFQFPLQ+H+LLHSLHPHLPPPS PAL SKSHNNNP SSIELPPNAL
Sbjct: 38  MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 97

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLEAKLI+IAEQEEAD
Sbjct: 98  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 157

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS+GL
Sbjct: 158 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL 217

Query: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 236
           NKSTRQKKIDAYAAMMVLERYF  SGQGTELLVPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 218 NKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD 272

[Close]

BLAST of CsGy3G007380 vs. NCBI nr
Match: XP_011650631.1 (PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus])

HSP 1 Score: 392.1 bits (1006), Expect = 1.3e-105
Identity = 195/196 (99.49%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60
           MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180

Query: 181 NKSTRQKKIDAYAAMM 197
           NKSTRQKKIDAYAAM+
Sbjct: 181 NKSTRQKKIDAYAAMV 196

[Close]

BLAST of CsGy3G007380 vs. NCBI nr
Match: XP_011650632.1 (PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus])

HSP 1 Score: 359.8 bits (922), Expect = 7.2e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60
           MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISR 179
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISR
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISR 178

[Close]

BLAST of CsGy3G007380 vs. NCBI nr
Match: XP_022979278.1 (uncharacterized protein LOC111479048 [Cucurbita maxima])

HSP 1 Score: 351.3 bits (900), Expect = 2.6e-93
Identity = 187/225 (83.11%), Postives = 197/225 (87.56%), Query Frame = 0


Query: 17  FPLQTHKLLHSLHPHLPP-PSSPALISKSHN-----NNPISSIELPPNALRRKLDPHWRG 76
           FPLQ+HK LHS     PP PSS  L+  S N        ISS+ELPPNALRRKLDP WRG
Sbjct: 9   FPLQSHK-LHSSAIFCPPRPSSLPLLPPSPNLICKCRTAISSVELPPNALRRKLDPQWRG 68

Query: 77  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSC 136
           GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEADEFIIGLPKS 
Sbjct: 69  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFIIGLPKSL 128

Query: 137 DGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKID 196
           DGKETPQSNKIRSIAGRVAA+AAERGWRVYL+DEHGTTAEAESHMI RGLNK+TRQKKID
Sbjct: 129 DGKETPQSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTTRQKKID 188

Query: 197 AYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 236
           AYAAMMVLERYFS SG+GTEL+VPK  VLQ+KLIEGPP DPDF+D
Sbjct: 189 AYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

[Close]

BLAST of CsGy3G007380 vs. TAIR10
Match: AT1G12244.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 264.2 bits (674), Expect = 7.5e-71
Identity = 126/180 (70.00%), Postives = 155/180 (86.11%), Query Frame = 0


Query: 54  ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEI 113
           E+PPNA+RRK+D +WRGGFSLGVDLG SRTG+A+SKG++ +PLTVL+ RGQKLE +L+EI
Sbjct: 64  EIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRLLEI 123

Query: 114 AEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAES 173
           AE+EEADEFIIGLP+S DGKET QSNKIRS+AGR+A +AAERGWRVY++DEHGTT+EA  
Sbjct: 124 AEEEEADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASD 183

Query: 174 HMISRGLNKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDF 233
            MI  GL+KS RQ + DAYAA+++LERYFST G G E+++PKSL LQ K+  G P DPDF
Sbjct: 184 RMIVMGLSKSERQNRSDAYAAVILLERYFSTQGLGIEIILPKSLELQAKIKNGAPVDPDF 243

[Close]

BLAST of CsGy3G007380 vs. Swiss-Prot
Match: sp|A1SJC8|YQGF_NOCSJ (Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain ATCC BAA-499 / JS614) OX=196162 GN=Noca_2408 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-12
Identity = 51/142 (35.92%), Postives = 75/142 (52.82%), Query Frame = 0


Query: 69  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEAKLIEIAEQEEAD---EF 128
           R G  +G+D G +R G+A S   GF   P+ TV   +G       I  AE++E     E 
Sbjct: 2   RAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEV 61

Query: 129 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNK 188
           ++GLP+S  G+E P + K+R  AGR+AAR A     V L DE  TT  AE+ +  +G   
Sbjct: 62  VVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTTVSAEAMLRDQGRTG 121

Query: 189 STRQKKIDAYAAMMVLERYFST 205
             R+  +D  AA+++L+    T
Sbjct: 122 GKRRAVVDQAAAVLILQHALDT 141

[Close]

BLAST of CsGy3G007380 vs. Swiss-Prot
Match: sp|A5D3C3|YQGF_PELTS (Putative pre-16S rRNA nuclease OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) OX=370438 GN=PTH_1065 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-11
Identity = 41/138 (29.71%), Postives = 80/138 (57.97%), Query Frame = 0


Query: 74  LGVDLGTSRTGLALS--KGFSTRPLTVLELRG--QKLEAKLIEIAEQEEADEFIIGLPKS 133
           +G+DLG  + G+ALS   G++ + L V+ ++G  +    ++ E+  Q    + ++GLP++
Sbjct: 4   MGLDLGDKKIGVALSDPMGWTAQGLDVIAVKGPPEASVERISELVRQYGVGKIVVGLPRN 63

Query: 134 CDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKI 193
            +G   P++ + R+ AG +A         V L+DE  TT EAE  +I   L+++ R++ I
Sbjct: 64  MNGSFGPRAERARAFAGCLAGAL---NLPVELWDERMTTLEAEKLLIEADLSRARRRQVI 123

Query: 194 DAYAAMMVLERYFSTSGQ 208
           D  AA+++L+ +  + G+
Sbjct: 124 DKMAAVLILQSFLDSQGR 138

[Close]

BLAST of CsGy3G007380 vs. Swiss-Prot
Match: sp|Q3SR28|YQGF_NITWN (Putative pre-16S rRNA nuclease OS=Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255) OX=323098 GN=Nwi_2004 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.2e-10
Identity = 46/137 (33.58%), Postives = 76/137 (55.47%), Query Frame = 0


Query: 67  HWRG-GFSLGVDLGTSRTGLALS---KGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEF 126
           HW   G  +G+DLGT   G+A+S   +  +T   T+         A+L+ IA +  A+ F
Sbjct: 14  HWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLAIAGERRAEGF 73

Query: 127 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNK 186
           I+GLP + DG E P++   R+ A R  AR  +  + + L+DE  +TA  E  +I   +++
Sbjct: 74  ILGLPINMDGSEGPRAQSTRAFA-RNLARLTD--FAIGLWDERLSTAAVERELIGLDMSR 133

Query: 187 STRQKKIDAYAAMMVLE 200
           + R K ID +AA+ +L+
Sbjct: 134 ARRAKVIDEHAAIFILQ 147

[Close]

BLAST of CsGy3G007380 vs. Swiss-Prot
Match: sp|Q2G9X2|YQGF_NOVAD (Putative pre-16S rRNA nuclease OS=Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199) OX=279238 GN=Saro_0906 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.4e-10
Identity = 41/133 (30.83%), Postives = 72/133 (54.14%), Query Frame = 0


Query: 70  GGFSLGVDLGTSRTGLALSK---GFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGL 129
           GG  +G+D GT   G+AL      F+T   T+   +    +A++  I  +      +IGL
Sbjct: 16  GGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIRAIVAERGVKGIVIGL 75

Query: 130 PKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQ 189
           P + DG E+P+S   R++A  +     + G  + L+DE  TT  AE  MI +  +++ R 
Sbjct: 76  PLNMDGSESPRSQGARAMARNL----EDLGLPILLWDERWTTQAAERAMIEQDFSRAKRA 135

Query: 190 KKIDAYAAMMVLE 200
           ++ID++AA ++L+
Sbjct: 136 ERIDSHAAALILQ 144

[Close]

BLAST of CsGy3G007380 vs. Swiss-Prot
Match: sp|C6C125|YQGF_DESAD (Putative pre-16S rRNA nuclease OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) OX=526222 GN=Desal_1125 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-09
Identity = 42/133 (31.58%), Postives = 71/133 (53.38%), Query Frame = 0


Query: 74  LGVDLGTSRTGLALS--KGFSTRPLTVLE-LRGQKLEAKLIEIAEQEEADEFIIGLPKSC 133
           L +D GT R GLA+S        P  V+E      + ++L+EI E E+  + +IGLP S 
Sbjct: 4   LSIDFGTKRVGLAISDPDQIFAFPYKVMERTTRDAMFSELLEIIENEKVGDIVIGLPLSL 63

Query: 134 DGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKID 193
           DG++T  + ++R+ A  +  R       ++L DE  ++  AE  +   GL    R+K +D
Sbjct: 64  DGEDTLTTRQVRNFAASLERRV---DLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNLD 123

Query: 194 AYAAMMVLERYFS 204
           + AA ++LE + +
Sbjct: 124 SQAAKIILETWLA 133

[Close]

BLAST of CsGy3G007380 vs. TrEMBL
Match: tr|A0A0A0L3L5|A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 8.6e-130
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60
           MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180

Query: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 236
           NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD
Sbjct: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]

BLAST of CsGy3G007380 vs. TrEMBL
Match: tr|A0A1S3AUT7|A0A1S3AUT7_CUCME (uncharacterized protein LOC103483114 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483114 PE=3 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 1.5e-121
Identity = 221/235 (94.04%), Postives = 226/235 (96.17%), Query Frame = 0


Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60
           MFT   GQCFQFQAFQFPLQ+H+LLHSLHPHLPPPS PAL SKSHNNNP SSIELPPNAL
Sbjct: 38  MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 97

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLEAKLI+IAEQEEAD
Sbjct: 98  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 157

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS+GL
Sbjct: 158 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL 217

Query: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 236
           NKSTRQKKIDAYAAMMVLERYF  SGQGTELLVPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 218 NKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD 272

[Close]

BLAST of CsGy3G007380 vs. TrEMBL
Match: tr|A0A1S4DSN6|A0A1S4DSN6_CUCME (uncharacterized protein LOC103483114 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483114 PE=4 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.9e-89
Identity = 167/177 (94.35%), Postives = 170/177 (96.05%), Query Frame = 0


Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60
           MFT   GQCFQFQAFQFPLQ+H+LLHSLHPHLPPPS PAL SKSHNNNP SSIELPPNAL
Sbjct: 38  MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 97

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLEAKLI+IAEQEEAD
Sbjct: 98  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 157

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS 178
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS
Sbjct: 158 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS 214

[Close]

BLAST of CsGy3G007380 vs. TrEMBL
Match: tr|A0A2P4HP09|A0A2P4HP09_QUESU (Putative pre-16s rrna nuclease OS=Quercus suber OX=58331 GN=CFP56_32757 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.4e-76
Identity = 158/223 (70.85%), Postives = 176/223 (78.92%), Query Frame = 0


Query: 18  PLQTHKLLHSLHPHLP---PPSSPALISKSHNNNP----ISSIELPPNALRRKLDPHWRG 77
           PLQ H L  +L  H P   P S P   +K+    P    IS  +LPPNAL RK DP+WRG
Sbjct: 13  PLQPHFLSPNLTIHKPLNTPASLPLSSTKTRKYTPTLRAISLQQLPPNALHRKRDPNWRG 72

Query: 78  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSC 137
           GFSLGVDLG SRTGLALSKGFS RPLTVLELRGQKLE +L++IA+QEEADEFIIGLPKS 
Sbjct: 73  GFSLGVDLGMSRTGLALSKGFSIRPLTVLELRGQKLELQLLQIAQQEEADEFIIGLPKSS 132

Query: 138 DGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKID 197
           DGKETPQSNK+RS+AGR AARAAERGWRVYL DEHGTT EA   MI  GL++STRQ KID
Sbjct: 133 DGKETPQSNKVRSVAGRFAARAAERGWRVYLQDEHGTTTEATDRMICMGLSRSTRQSKID 192

Query: 198 AYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDF 234
           AYAAMMVLERYFS +GQ TEL++PK+L LQ+KL  GPP D DF
Sbjct: 193 AYAAMMVLERYFSLAGQETELVLPKNLDLQEKLKTGPPRDIDF 235

[Close]

BLAST of CsGy3G007380 vs. TrEMBL
Match: tr|A0A2P4KL56|A0A2P4KL56_QUESU (Putative pre-16s rrna nuclease OS=Quercus suber OX=58331 GN=CFP56_30511 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 2.5e-76
Identity = 157/223 (70.40%), Postives = 176/223 (78.92%), Query Frame = 0


Query: 18  PLQTHKLLHSLHPHLP---PPSSPALISKSHNNNP----ISSIELPPNALRRKLDPHWRG 77
           PLQ H L  +   H P   P S P   +K+ N  P    IS  +LPPNAL RK DP+WRG
Sbjct: 13  PLQPHFLSPNPTTHKPVNTPASLPLSSTKTRNYTPTLRAISLQQLPPNALHRKRDPNWRG 72

Query: 78  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSC 137
           GFSLGVDLG SRTGLALSKGFS RPLTVL+LRGQKLE +L++IA+QEEADEFIIGLPKS 
Sbjct: 73  GFSLGVDLGMSRTGLALSKGFSIRPLTVLDLRGQKLELQLLQIAQQEEADEFIIGLPKSS 132

Query: 138 DGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKID 197
           DGKETPQSNK+RS+AGR AARAAERGWRVYL DEHGTT EA   MI  GL++STRQ KID
Sbjct: 133 DGKETPQSNKVRSVAGRFAARAAERGWRVYLQDEHGTTTEATDRMICMGLSRSTRQSKID 192

Query: 198 AYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDF 234
           AYAAMMVLERYFS +GQ TEL++PK+L LQ+KL  GPP D DF
Sbjct: 193 AYAAMMVLERYFSLAGQETELVLPKNLDLQEKLKTGPPRDIDF 235

The following BLAST results are available for this feature:

BLAST of CsGy3G007380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133768.1	1.3e-129	100.00	PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus] >XP...	[more]
XP_008437782.1	2.2e-121	94.04	PREDICTED: uncharacterized protein LOC103483114 isoform X1 [Cucumis melo]	[more]
XP_011650631.1	1.3e-105	99.49	PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus]	[more]
XP_011650632.1	7.2e-96	100.00	PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus]	[more]
XP_022979278.1	2.6e-93	83.11	uncharacterized protein LOC111479048 [Cucurbita maxima]	[more]

BLAST of CsGy3G007380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12244.1	7.5e-71	70.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of CsGy3G007380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A1SJC8\|YQGF_NOCSJ	4.4e-12	35.92	Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain ATCC BAA-499 / JS614)...	[more]
sp\|A5D3C3\|YQGF_PELTS	4.9e-11	29.71	Putative pre-16S rRNA nuclease OS=Pelotomaculum thermopropionicum (strain DSM 13...	[more]
sp\|Q3SR28\|YQGF_NITWN	3.2e-10	33.58	Putative pre-16S rRNA nuclease OS=Nitrobacter winogradskyi (strain ATCC 25391 / ...	[more]
sp\|Q2G9X2\|YQGF_NOVAD	5.4e-10	30.83	Putative pre-16S rRNA nuclease OS=Novosphingobium aromaticivorans (strain ATCC 7...	[more]
sp\|C6C125\|YQGF_DESAD	1.2e-09	31.58	Putative pre-16S rRNA nuclease OS=Desulfovibrio salexigens (strain ATCC 14822 / ...	[more]

BLAST of CsGy3G007380 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3L5\|A0A0A0L3L5_CUCSA	8.6e-130	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116900 PE=3 SV=1	[more]
tr\|A0A1S3AUT7\|A0A1S3AUT7_CUCME	1.5e-121	94.04	uncharacterized protein LOC103483114 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4DSN6\|A0A1S4DSN6_CUCME	1.9e-89	94.35	uncharacterized protein LOC103483114 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P4HP09\|A0A2P4HP09_QUESU	1.4e-76	70.85	Putative pre-16s rrna nuclease OS=Quercus suber OX=58331 GN=CFP56_32757 PE=3 SV=...	[more]
tr\|A0A2P4KL56\|A0A2P4KL56_QUESU	2.5e-76	70.40	Putative pre-16s rrna nuclease OS=Quercus suber OX=58331 GN=CFP56_30511 PE=3 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR005227	YqgF
IPR037027	YqgF/RNaseH-like_dom_sf
IPR006641	YqgF/RNaseH-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G007380.1	CsGy3G007380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 71..171 e-value: 3.7E-18 score: 76.3
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	G3DSA:3.30.420.140		coord: 72..211 e-value: 1.9E-30 score: 107.7
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 73..203 e-value: 6.6E-29 score: 100.9
IPR005227	Putative pre-16S rRNA nuclease	TIGRFAM	TIGR00250	TIGR00250	coord: 74..202 e-value: 4.5E-20 score: 70.0
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 42..216
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 71..206 score: 17.166
None	No IPR available	PANTHER	PTHR33317:SF2	HOLLIDAY JUNCTION RESOLVASE-RELATED	coord: 42..216
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 72..204

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G007380	Cla021088	Watermelon (97103) v1	cgybwmB217
CsGy3G007380	Csa3G116900	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G007380	MELO3C005958	Melon (DHL92) v3.5.1	cgybmeB200
CsGy3G007380	ClCG05G000210	Watermelon (Charleston Gray)	cgybwcgB203
CsGy3G007380	CSPI03G07240	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G007380	Lsi05G022080	Bottle gourd (USVL1VR-Ls)	cgyblsiB196
CsGy3G007380	MELO3C005958.2	Melon (DHL92) v3.6.1	cgybmedB201
CsGy3G007380	CsaV3_3G007360	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G007380	Cla97C05G080180	Watermelon (97103) v2	cgybwmbB196
CsGy3G007380	Bhi01G000439	Wax gourd	cgybwgoB272

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G007380	Cucurbita maxima (Rimu)	cgybcmaB280
CsGy3G007380	Cucurbita maxima (Rimu)	cgybcmaB318
CsGy3G007380	Cucurbita maxima (Rimu)	cgybcmaB430
CsGy3G007380	Cucurbita moschata (Rifu)	cgybcmoB290
CsGy3G007380	Cucurbita moschata (Rifu)	cgybcmoB401
CsGy3G007380	Cucurbita pepo (Zucchini)	cgybcpeB406
CsGy3G007380	Cucurbita pepo (Zucchini)	cgybcpeB454
CsGy3G007380	Silver-seed gourd	carcgybB0105
CsGy3G007380	Silver-seed gourd	carcgybB0143