ClCG05G000210 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G000210
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein LENGTH=254
LocationCG_Chr05 : 364744 .. 369265 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGGGTTGGGCTTTTGAGTCAACTTGAATGGAAACGATGTGTGCGCAACGTTTCCAACCCTTTCAGTTTCCGCTGCAGAGCCACAATCTTGTGTCTCCCACCATTTTCTGTCTTCCACCACTCCCTTCCTCCCTATCCCTTCCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCACAACCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTAATTTTTCTTCATTTTCGCCTCTCTGCGTTTTTCTGTAGCTTGTAATTTCAGCACATTGAACTAATCCACTCTTGTCCTAGATGCTTGCTTTACATTTTTCTGTCTTTCTGCCTACTTTTCTCCTAAATTTAGCGTTATTAACGCAATCATGGTCGATGTCTGGGACATCACTGTTTATAATGTGGCCAACGGCAGACTGCTATTATATTTTCAATTATGTTTTACACAGTCCACCACGCTCTTTTTACTCGGCTGGTTTTATGTTATACATGTATATTGAAATTACAAACGCTTTCCGGCATTAGACTCAATGGTGTGTGTTATCATTCGTTTGGGACTTATGATTTCTGTAGCTGGCTTAGGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGTATATACCTCTCCATCTCTGACGATCTTGCTAATGAAATGCTATCAACATGTTGGAATTATATTTCTTCTCTTTACTTGCACAATAATTCATCCATTGATGGAAAAAAAAACTGTAGGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACACCTCAGTCAAATAAAATTCGAAGTATTGCTGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGTGAAATACACCGAATGGTTGCACTTGATTCTCCTATGTCTTCCTCTCTGTTCTGATACTGCTTTTAGTTTAGGGGCTGGAGAGTTTACTTGCATGATGAACATGGGACAACGGCAGAAGCGGACAGCCATATGATTTCCAAGTATTGTTGTCCTCAACACTCACTTATGTTGTCTCTTGTTTAATATTGTTTCCGTGGATTCTATCCTATAAAATTTCATGCATCTCCTCTATTAATATTGTCAGTGTAAACTATATCGCACTTAATGGATTGTCATTCAACATAGTGCCATATTGATTTATCCATTTCCTCTGAGGATTTTGTTGACGTAGATTTTAGGGGTTTGTAGAAATGATAGACTGCCATGTGAAGATTCTTAGACCAATGGCGAACTGAAACTGATGTTAATCTCTATTCTCTACCATTTGGCATTAACTTCATGAATTTATCAAGGTGATGCAGACAGTTGGTTGTTATTTGCTATGGTATTATTGGGATAGGTAGGAATGGAAGAGATGAACACTGGATAAGAAGGTAGAAAAAGCTTATCCCAAATGGAGAAAAAAAAAAGATCTAAGAAGTGCAATGATTTAACATAAGAGATAAAATGAGAACTTTCTCCAAGAATCAAATTAAAATCTTTATTATCAATTAAAAGCGATCAATACTGGCAGGCTAAGTCTGTCTCTTTGTGGGACCCTGTGGTGTTTAAAGTTTGGAATCGGTTAGCCCATTGGAAGAATTCCCCCCCCCCCCAAAAAAAAGCAGGTAGGCTAACCTTGATGAAGACTACCTTGAGTGGTATTCCTATTTATTACTTTTCGCTTTTCAGGGCCCATGTGAGGTGTATAAGTGTATGGAGAGGTTGATGCATGACTTCCTTTGGGAAGGGGTTGATGAAGGTAAAGGCAAAGGTTCACACTTGATTAGATGGGGGATGAGACGGTAAAGGCAAAGGTTCCCACTTGATTAGATGGGAGATGAGAGAATGGTTTCCTTGGGGGGTTTGAAAATTGGGAATCTTAGGATTCGTGACAAAACCCTTTTAGCCAAATGGTTAAGGCGCTTTTCCTCCGAGCCCAATTCTTTGTGGCGTAGGATCACTGAAAGTAAACATGGCCCCCATCATTTTGAACGGTTGTCTAAAGGGATCAAAGGTACCCACCGGAATTTGTGAAAAGATATTTCGAAAGAGCTCCCTTTTTTTGTTCATTTGGTTTGTTGTGTGGTGGGGGAGGGGAGAGATACTTACTTTTGGGAAGATCACTGGTGGGAGCTCTTGTTCCTTTTCATTCGGATTCCATCATTCTTTTTCTGATAGGGAAGCAGGGATGTGGCCGCTCTTCTTTCTTTACTCGAGGGTCACCCTTTTAGGTTGGGGAGAAGGGATGTCAGACTTTTCACCTAGCAAATGTCTCCACTGAATGCTATTGAGATCATCTGTTGATTTTATGCCTGAAAACTCAACACTGGAAGGATCTAAAAGAAACCACATTGTGACTGAGGGAGCAAAGCAAAAGTAAGATTGAATGACGTGAATGATGGAGAACCTAGTCAATTACTAGAAATTTTGATACTCGTGCAAACTTCTATATGAAACTGATGGAGAATTGACTTGTTTCTTGTGAGGGTTGTTGCATGGATAGTGACACATTTTTGTCGCCTGTGGTTATTGATGTTATCAGTTTCTGTTATTGATGTTATCAGTTTCTGTTTTGCTTTATTGTATTTAATGGAAGAGTACAATGGTACAGTTTATATTTAAAATGGGCCTTGCGGCTGTTTTTAGATTTTCATCATGCAAACAAGATACTTTGTTGACATAAGAAAAGAAAAAAATTTGTTATCCCACTAGTATAGAAAAGACTTCTTTTTTTTTTTTTTTTTTCTTTTTGTTTTCTAATTGTTTTTTAGATATTTCTCTTGCGGTTCTCTCAGTTTAAATTGTATGACTCTGAGACCCTGTCCGTTCATTAGCTATGGTTAGACTGTATGTTGCATCGACTGGAAGAACTCTATGTAATCTTTTAGGCTCGGGGTTGGCTTTCCTCCCCCTCCTTTCCTCCACTCCTTTTGTAGTTCCAATTAATCTATGAAATTGGTTGGTTTGTTACTGAAAAATAGATAATGATATCCTCTTTATATCAGTAGATCTATACTTCTCTATTTGGGTTGGTCACGTAATGACGTATAGTAATGTAACAAGATTTGAATATGGAAAATTGACATTTTGATGTTTTGTTCAGGGGGCTCAATAAATCTACTCGGCAGAAGAAGATTGATGCCTATGCTGCCATGGTAAAGTTGTGAATATTTTCATATTATGAGCACTGGATTATATGAAATGCAGCAATCCATGTGCAGGCTTCCTTTTTTTTTTTTTTAATAATTTTTTCACTTTACTTCTCTTTATTTGATGCAGATGGTACTAGAGAGATATTTTTTCTAATAATTTTTTCACATTACTTCTCTTTATTTGATGCAGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAACCGAGCTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAGCTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGAGGATGTGCTTCAGGCAAGGAAAAAATAAACGGGGAGGAGCCCTCGGTCAAAAGTTGGGAAATTCCTAATAGTTTTCTGGAGAAAACAAGATCGCTATCAAACAAAGGTTTTTGTTTCTGTTGAAGTGGAAGAGAGCCGCCACCGATCTAGAAATGGATGGTACTTTGAAATGAGGGTCACTTCCTCAAAACATGGTCATGAAATTAGGTGAAAGAGATACCTTCGTAATGAAGGCTCAGTTGAAGTTAGCAGTGGTCGTGAGATGATACATTTGATATATTATATCTTTATAACATCCTTGCCAGAATCTCCTTCTACACATTGAATGCACCTAGACTTCGGTTAGTTAAGGATGGGATTTGCTAAGGTCCTTCCTATACTATAGGCACCTTTGCACTGTGCCTGTCCTTGATCAGAAAGGGATCTGTCGAATCTCATATGTAGTGGGTTGAAAATTTTCTGAACAATGAAATCGATCTGTTCCTTGAGTAGAGATGCACCGTCATAATGAGATTTAAAAATAATGCTTTGCTAGTTAATACTGTTGAAAAGGGTCTAGACAGTTTTAGAGGCCTTGGGTTGGTATTTTATTACTTGAAAACTCTTCAGCCCTCCTGCGCTAAAGTCAAACATGGCTCTAGTATATCCTTTTCTAGTTTACCATTGGAGGGGAGGGTATCACTGTTGCAAAGACATCTCTCCGCTCTCTTCAATGTCTTTCTTCCAGGAAGCGTCTCGCTGTTACAGGGGCTTGGGATTCAACAAATGGGTACTGGCTCGAACAATTTACGTAAAGTTTTATGACAGTACAAGGATTGGATTTCTTTGCTCTCTGTTGATATTTTGGTATATTTTGGGTTTGATCATAGGATGTATCTTAACAAATATGGACGGTATGTATACGTCTCAGTCTAGATGGCTAT

mRNA sequence

GTTGGGTTGGGCTTTTGAGTCAACTTGAATGGAAACGATGTGTGCGCAACGTTTCCAACCCTTTCAGTTTCCGCTGCAGAGCCACAATCTTGTGTCTCCCACCATTTTCTGTCTTCCACCACTCCCTTCCTCCCTATCCCTTCCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCACAACCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACACCTCAGTCAAATAAAATTCGAAGTATTGCTGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGGGCTGGAGAGTTTACTTGCATGATGAACATGGGACAACGGCAGAAGCGGACAGCCATATGATTTCCAAGGGGCTCAATAAATCTACTCGGCAGAAGAAGATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAACCGAGCTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAGCTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGAGGATGTGCTTCAGGCAAGGAAAAAATAAACGGGGAGGAGCCCTCGGTCAAAAGTTGGGAAATTCCTAATAGTTTTCTGGAGAAAACAAGATCGCTATCAAACAAAGGTTTTTGTTTCTGTTGAAGTGGAAGAGAGCCGCCACCGATCTAGAAATGGATGGTACTTTGAAATGAGGGTCACTTCCTCAAAACATGGTCATGAAATTAGGTGAAAGAGATACCTTCGTAATGAAGGCTCAGTTGAAGTTAGCAGTGGTCGTGAGATGATACATTTGATATATTATATCTTTATAACATCCTTGCCAGAATCTCCTTCTACACATTGAATGCACCTAGACTTCGGTTAGTTAAGGATGGGATTTGCTAAGGTCCTTCCTATACTATAGGCACCTTTGCACTGTGCCTGTCCTTGATCAGAAAGGGATCTGTCGAATCTCATATGTAGTGGGTTGAAAATTTTCTGAACAATGAAATCGATCTGTTCCTTGAGTAGAGATGCACCGTCATAATGAGATTTAAAAATAATGCTTTGCTAGTTAATACTGTTGAAAAGGGTCTAGACAGTTTTAGAGGCCTTGGGTTGGTATTTTATTACTTGAAAACTCTTCAGCCCTCCTGCGCTAAAGTCAAACATGGCTCTAGTATATCCTTTTCTAGTTTACCATTGGAGGGGAGGGTATCACTGTTGCAAAGACATCTCTCCGCTCTCTTCAATGTCTTTCTTCCAGGAAGCGTCTCGCTGTTACAGGGGCTTGGGATTCAACAAATGGGTACTGGCTCGAACAATTTACGTAAAGTTTTATGACAGTACAAGGATTGGATTTCTTTGCTCTCTGTTGATATTTTGGTATATTTTGGGTTTGATCATAGGATGTATCTTAACAAATATGGACGGTATGTATACGTCTCAGTCTAGATGGCTAT

Coding sequence (CDS)

ATGGAAACGATGTGTGCGCAACGTTTCCAACCCTTTCAGTTTCCGCTGCAGAGCCACAATCTTGTGTCTCCCACCATTTTCTGTCTTCCACCACTCCCTTCCTCCCTATCCCTTCCTCCTCTGCCTCCATCTCCAACCCTAATTTGCAAATGCCACAACCCAATTTCCTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCTCACTGGAGAGGAGGTTTCAGTCTAGGGGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCACTCGTCCTCTTACCGTTCTGGAGTTGCGAGGACAAAAGCTTGAGGTTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGAAAAGAGACACCTCAGTCAAATAAAATTCGAAGTATTGCTGGAAGGGTGGCAGCCCGGGCAGCTGAAAGGGGCTGGAGAGTTTACTTGCATGATGAACATGGGACAACGGCAGAAGCGGACAGCCATATGATTTCCAAGGGGCTCAATAAATCTACTCGGCAGAAGAAGATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTTCATGTCAGGCGAGGGAACCGAGCTTGTAGTGCCTAAGAGTCTAGTCTTACAAGATAAGCTTATTGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA

Protein sequence

METMCAQRFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHNPISSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD
Homology
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BLAST of ClCG05G000210 vs. Swiss-Prot
Match: YQGF_NOCSJ (Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-12
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 1 

Query: 74  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEVKLIEIAEQEEAD---EF 133
           R G  +G+D G +R G+A S   GF   P+ TV   +G    +  I  AE++E     E 
Sbjct: 2   RAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEV 61

Query: 134 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNK 193
           ++GLP+S  G+E P + K+R  AGR+AAR A     V L DE  TT  A++ +  +G   
Sbjct: 62  VVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTTVSAEAMLRDQGRTG 121

Query: 194 STRQKKIDAYAAMMVLE 205
             R+  +D  AA+++L+
Sbjct: 122 GKRRAVVDQAAAVLILQ 136

[Close]
BLAST of ClCG05G000210 vs. Swiss-Prot
Match: YQGF_ECO57 (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-12
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1 

Query: 76  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEVKLIE-IAEQEEADEFIIGLP 135
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 136 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQK 195
            + DG E P + + R  A R+  R    G  V LHDE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 196 KIDAYAAMMVLERYF 208
           KID+ +A+++LE YF
Sbjct: 123 KIDSASAVIILESYF 134

[Close]
BLAST of ClCG05G000210 vs. Swiss-Prot
Match: YQGF_ECO5E (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.8e-12
Identity = 46/135 (34.07%), Postives = 72/135 (53.33%), Query Frame = 1 

Query: 76  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEVKLIE-IAEQEEADEFIIGLP 135
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 136 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQK 195
            + DG E P + + R  A R+  R    G  V LHDE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 196 KIDAYAAMMVLERYF 208
           KID+ +A+++LE YF
Sbjct: 123 KIDSASAVIILESYF 134

[Close]
BLAST of ClCG05G000210 vs. Swiss-Prot
Match: YQGF_SALTY (Putative pre-16S rRNA nuclease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.6e-12
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 1 

Query: 76  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEVKLIE-IAEQEEADEFIIGLP 135
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62

Query: 136 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQK 195
            + DG E P + + R  A R+  R    G  V LHDE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 122

Query: 196 KIDAYAAMMVLERYF 208
           K+D+ +A+++LE YF
Sbjct: 123 KVDSASAVIILESYF 134

[Close]
BLAST of ClCG05G000210 vs. Swiss-Prot
Match: YQGF_SHIFL (Putative pre-16S rRNA nuclease OS=Shigella flexneri GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.6e-12
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 1 

Query: 76  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEVKLIE-IAEQEEADEFIIGLP 135
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 136 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQK 195
            + DG E P + + R  A R+  R    G  V LHDE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 196 KIDAYAAMMVLERYF 208
           K+D+ +A+++LE YF
Sbjct: 123 KVDSASAVIILESYF 134

[Close]
BLAST of ClCG05G000210 vs. TrEMBL
Match: A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 386.0 bits (990), Expect = 3.4e-104
Identity = 199/235 (84.68%), Postives = 208/235 (88.51%), Query Frame = 1 

Query: 8   RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCH--NPISSIELPPNAL 67
           +FQ FQFPLQ+H L+      LPP          P SP LI K H  NPISSIELPPNAL
Sbjct: 11  QFQAFQFPLQTHKLLHSLHPHLPP----------PSSPALISKSHNNNPISSIELPPNAL 70

Query: 68  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEAD 127
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEAD
Sbjct: 71  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 130

Query: 128 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGL 187
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SHMIS+GL
Sbjct: 131 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 190

Query: 188 NKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           NKSTRQKKIDAYAAMMVLERYF  SG+GTEL+VPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 191 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]
BLAST of ClCG05G000210 vs. TrEMBL
Match: A0A067KPF4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04739 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.3e-76
Identity = 162/238 (68.07%), Postives = 182/238 (76.47%), Query Frame = 1 

Query: 4   MCAQRFQPFQFPLQSHNLVSPTIFCLPPL---PSSLSLPPLPPSPTLICKCHNPISSIEL 63
           MC+ +  PF   LQ   L + +I  LP +   PSSL LP LP +     +    +S  E+
Sbjct: 1   MCSLQ-NPF---LQLTELFTSSINSLPRVSNVPSSLRLP-LPQTYKHGFRLRALLSIQEI 60

Query: 64  PPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAE 123
           PPNALRRK D  WRGGFSLG+DLG SRTGLALSKGFS RPLTVLELRGQKLE++L+EIAE
Sbjct: 61  PPNALRRKSDSLWRGGFSLGIDLGLSRTGLALSKGFSFRPLTVLELRGQKLELRLLEIAE 120

Query: 124 QEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHM 183
            EEADEFIIGLPKS DGKETPQSNK+R +AGR+A RAAERGWRVYL DEHGT+ EA   M
Sbjct: 121 DEEADEFIIGLPKSSDGKETPQSNKVRCVAGRLAVRAAERGWRVYLQDEHGTSMEATYRM 180

Query: 184 ISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 239
           I  GL KS RQK +DAYAA+MVLERYF MSGEGTELVVPK L LQDKL +GPP D DF
Sbjct: 181 IDMGLRKSARQKSVDAYAAVMVLERYFCMSGEGTELVVPKQLDLQDKLRKGPPKDLDF 233

[Close]
BLAST of ClCG05G000210 vs. TrEMBL
Match: A0A0L9VR24_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74
Identity = 152/229 (66.38%), Postives = 176/229 (76.86%), Query Frame = 1 

Query: 21  LVSPTIFCLPPLPSSLSLPPLPPS--PTLI-CKCH--------NPISSIELPPNALRRKL 80
           ++S  +  LPP    LS  PL     P+ + CK          N +   ELPPNALRRK 
Sbjct: 1   MLSQQVLHLPPQKLFLSCSPLNVRKIPSFVNCKIGYGHSFLTVNALKLDELPPNALRRKR 60

Query: 81  DPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFII 140
           +P WRGGFSLG+DLG +RTGLALSKGFS RPLTVLELRGQKLEV++I IAEQEE DEFII
Sbjct: 61  EPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEQEEVDEFII 120

Query: 141 GLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKST 200
           GLPKS DGKETPQSNK+RS+AGR+A +AAERGWRVYL DEHGTT+EA   MI+ GL+KS 
Sbjct: 121 GLPKSADGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGTTSEAMDRMINMGLSKSC 180

Query: 201 RQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 239
           +QKK+DA+AAMMVLERYF  SG+GTELV+PK+L LQ KL  GPP D DF
Sbjct: 181 QQKKLDAFAAMMVLERYFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 229

[Close]
BLAST of ClCG05G000210 vs. TrEMBL
Match: A0A0S3SXV5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74
Identity = 152/229 (66.38%), Postives = 176/229 (76.86%), Query Frame = 1 

Query: 21  LVSPTIFCLPPLPSSLSLPPLPPS--PTLI-CKCH--------NPISSIELPPNALRRKL 80
           ++S  +  LPP    LS  PL     P+ + CK          N +   ELPPNALRRK 
Sbjct: 1   MLSQQVLHLPPQKLFLSCSPLNVRKIPSFVNCKIGYGHSFLTVNALKLDELPPNALRRKR 60

Query: 81  DPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFII 140
           +P WRGGFSLG+DLG +RTGLALSKGFS RPLTVLELRGQKLEV++I IAEQEE DEFII
Sbjct: 61  EPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEQEEVDEFII 120

Query: 141 GLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKST 200
           GLPKS DGKETPQSNK+RS+AGR+A +AAERGWRVYL DEHGTT+EA   MI+ GL+KS 
Sbjct: 121 GLPKSADGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGTTSEAMDRMINMGLSKSC 180

Query: 201 RQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 239
           +QKK+DA+AAMMVLERYF  SG+GTELV+PK+L LQ KL  GPP D DF
Sbjct: 181 QQKKLDAFAAMMVLERYFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 229

[Close]
BLAST of ClCG05G000210 vs. TrEMBL
Match: A0A0B2QT40_GLYSO (Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.2e-74
Identity = 148/214 (69.16%), Postives = 168/214 (78.50%), Query Frame = 1 

Query: 40  PLPP-SPTLICKCHNP--------------ISSIELPPNALRRKLDPHWRGGFSLGVDLG 99
           PLPP  P L C   NP              ++  ELPPNALR+K +P WRGGFSLG+DLG
Sbjct: 8   PLPPHKPFLRCSPSNPSFVNGKNGYCRVKALTLDELPPNALRKKREPQWRGGFSLGLDLG 67

Query: 100 TSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQSN 159
            +RTGLALSKGFS RPLTVLELRGQKLEV++I IAE+EE DEFIIGLPKS DGKETPQSN
Sbjct: 68  LARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSN 127

Query: 160 KIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKKIDAYAAMMVLE 219
           K+RS+AGR+A RAAERGWRVYL DEHGTT EA   MI+  L+KS++QKK+DAYAAMMVLE
Sbjct: 128 KVRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLE 187

Query: 220 RYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 239
           RYF  SG+GTELV+PK+L LQ KL  GPP D DF
Sbjct: 188 RYFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 221

[Close]
BLAST of ClCG05G000210 vs. TAIR10
Match: AT1G12244.1 (AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 258.8 bits (660), Expect = 3.2e-69
Identity = 124/180 (68.89%), Postives = 150/180 (83.33%), Query Frame = 1 

Query: 59  ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEI 118
           E+PPNA+RRK+D +WRGGFSLGVDLG SRTG+A+SKG++ +PLTVL+ RGQKLE +L+EI
Sbjct: 64  EIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRLLEI 123

Query: 119 AEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADS 178
           AE+EEADEFIIGLP+S DGKET QSNKIRS+AGR+A +AAERGWRVY+ DEHGTT+EA  
Sbjct: 124 AEEEEADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASD 183

Query: 179 HMISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 238
            MI  GL+KS RQ + DAYAA+++LERYF   G G E+++PKSL LQ K+  G P DPDF
Sbjct: 184 RMIVMGLSKSERQNRSDAYAAVILLERYFSTQGLGIEIILPKSLELQAKIKNGAPVDPDF 243

[Close]
BLAST of ClCG05G000210 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus])

HSP 1 Score: 386.0 bits (990), Expect = 4.9e-104
Identity = 199/235 (84.68%), Postives = 208/235 (88.51%), Query Frame = 1 

Query: 8   RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCH--NPISSIELPPNAL 67
           +FQ FQFPLQ+H L+      LPP          P SP LI K H  NPISSIELPPNAL
Sbjct: 11  QFQAFQFPLQTHKLLHSLHPHLPP----------PSSPALISKSHNNNPISSIELPPNAL 70

Query: 68  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEAD 127
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEAD
Sbjct: 71  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 130

Query: 128 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGL 187
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SHMIS+GL
Sbjct: 131 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 190

Query: 188 NKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFKD 241
           NKSTRQKKIDAYAAMMVLERYF  SG+GTEL+VPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 191 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]
BLAST of ClCG05G000210 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo])

HSP 1 Score: 385.2 bits (988), Expect = 8.4e-104
Identity = 200/241 (82.99%), Postives = 208/241 (86.31%), Query Frame = 1 

Query: 4   MCAQ--RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCHN--PISSIE 63
           +C Q  +FQ FQFPLQSH L+      LPP          P  P L  K HN  P SSIE
Sbjct: 42  LCGQCFQFQAFQFPLQSHRLLHSLHPHLPP----------PSPPALFSKSHNNNPFSSIE 101

Query: 64  LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIA 123
           LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLE KLI+IA
Sbjct: 102 LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIA 161

Query: 124 EQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSH 183
           EQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SH
Sbjct: 162 EQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESH 221

Query: 184 MISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDFK 241
           MISKGLNKSTRQKKIDAYAAMMVLERYF MSG+GTEL+VPKSLVLQDKLIEGPPTDPDFK
Sbjct: 222 MISKGLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFK 272

[Close]
BLAST of ClCG05G000210 vs. NCBI nr
Match: gi|778676650|ref|XP_011650631.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 1.1e-82
Identity = 164/196 (83.67%), Postives = 171/196 (87.24%), Query Frame = 1 

Query: 8   RFQPFQFPLQSHNLVSPTIFCLPPLPSSLSLPPLPPSPTLICKCH--NPISSIELPPNAL 67
           +FQ FQFPLQ+H L+      LPP          P SP LI K H  NPISSIELPPNAL
Sbjct: 11  QFQAFQFPLQTHKLLHSLHPHLPP----------PSSPALISKSHNNNPISSIELPPNAL 70

Query: 68  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEAD 127
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEAD
Sbjct: 71  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 130

Query: 128 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGL 187
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYL+DEHGTTAEA+SHMIS+GL
Sbjct: 131 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 190

Query: 188 NKSTRQKKIDAYAAMM 202
           NKSTRQKKIDAYAAM+
Sbjct: 191 NKSTRQKKIDAYAAMV 196

[Close]
BLAST of ClCG05G000210 vs. NCBI nr
Match: gi|802596489|ref|XP_012072278.1| (PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas])

HSP 1 Score: 293.5 bits (750), Expect = 3.3e-76
Identity = 162/238 (68.07%), Postives = 182/238 (76.47%), Query Frame = 1 

Query: 4   MCAQRFQPFQFPLQSHNLVSPTIFCLPPL---PSSLSLPPLPPSPTLICKCHNPISSIEL 63
           MC+ +  PF   LQ   L + +I  LP +   PSSL LP LP +     +    +S  E+
Sbjct: 1   MCSLQ-NPF---LQLTELFTSSINSLPRVSNVPSSLRLP-LPQTYKHGFRLRALLSIQEI 60

Query: 64  PPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAE 123
           PPNALRRK D  WRGGFSLG+DLG SRTGLALSKGFS RPLTVLELRGQKLE++L+EIAE
Sbjct: 61  PPNALRRKSDSLWRGGFSLGIDLGLSRTGLALSKGFSFRPLTVLELRGQKLELRLLEIAE 120

Query: 124 QEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHM 183
            EEADEFIIGLPKS DGKETPQSNK+R +AGR+A RAAERGWRVYL DEHGT+ EA   M
Sbjct: 121 DEEADEFIIGLPKSSDGKETPQSNKVRCVAGRLAVRAAERGWRVYLQDEHGTSMEATYRM 180

Query: 184 ISKGLNKSTRQKKIDAYAAMMVLERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 239
           I  GL KS RQK +DAYAA+MVLERYF MSGEGTELVVPK L LQDKL +GPP D DF
Sbjct: 181 IDMGLRKSARQKSVDAYAAVMVLERYFCMSGEGTELVVPKQLDLQDKLRKGPPKDLDF 233

[Close]
BLAST of ClCG05G000210 vs. NCBI nr
Match: gi|720012470|ref|XP_010259874.1| (PREDICTED: uncharacterized protein LOC104599161 [Nelumbo nucifera])

HSP 1 Score: 290.4 bits (742), Expect = 2.8e-75
Identity = 148/215 (68.84%), Postives = 172/215 (80.00%), Query Frame = 1 

Query: 29  LPPLPSSLSLPPLPPSPTLICKCHNP-----ISSIELPPNALRRKLDPHWRGGFSLGVDL 88
           L P+   ++  P+     L+ K H P     +S  E+PPNA RRK+DPHWRGGFS+GVDL
Sbjct: 28  LGPVLRKVTPTPISWQSPLMNKVHIPSKIRAVSIDEIPPNAFRRKIDPHWRGGFSVGVDL 87

Query: 89  GTSRTGLALSKGFSTRPLTVLELRGQKLEVKLIEIAEQEEADEFIIGLPKSCDGKETPQS 148
           G SRTG+A+SKGFS RPLTVLELRGQKLE +L+EIAE+EEADEFIIGLPKS  GKETPQS
Sbjct: 88  GLSRTGVAVSKGFSARPLTVLELRGQKLESRLLEIAEREEADEFIIGLPKSRHGKETPQS 147

Query: 149 NKIRSIAGRVAARAAERGWRVYLHDEHGTTAEADSHMISKGLNKSTRQKKIDAYAAMMVL 208
           NK+RS+AGR+A RAAERGWRVYL DEHGT+ EA   MI  G+NKSTRQ +IDA+AAMMVL
Sbjct: 148 NKVRSVAGRLAVRAAERGWRVYLQDEHGTSMEALDFMIDTGINKSTRQGRIDAFAAMMVL 207

Query: 209 ERYFFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 239
           ERYF MSG GTELV+PK L LQ+KL +GPP D DF
Sbjct: 208 ERYFSMSGHGTELVLPKQLDLQEKLRKGPPKDEDF 242

The following BLAST results are available for this feature:
BLAST of ClCG05G000210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YQGF_NOCSJ4.4e-1235.77Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=N... [more]
YQGF_ECO575.8e-1234.07Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 GN=yqgF PE=3 SV=1[more]
YQGF_ECO5E5.8e-1234.07Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC... [more]
YQGF_SALTY7.6e-1233.33Putative pre-16S rRNA nuclease OS=Salmonella typhimurium (strain LT2 / SGSC1412 ... [more]
YQGF_SHIFL7.6e-1233.33Putative pre-16S rRNA nuclease OS=Shigella flexneri GN=yqgF PE=3 SV=1[more]
BLAST of ClCG05G000210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3L5_CUCSA3.4e-10484.68Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1[more]
A0A067KPF4_JATCU2.3e-7668.07Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04739 PE=3 SV=1[more]
A0A0L9VR24_PHAAN1.7e-7466.38Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1[more]
A0A0S3SXV5_PHAAN1.7e-7466.38Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=... [more]
A0A0B2QT40_GLYSO2.2e-7469.16Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1[more]
BLAST of ClCG05G000210 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G12244.13.2e-6968.89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of ClCG05G000210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449431960|ref|XP_004133768.1|4.9e-10484.68PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus][more]
gi|659074761|ref|XP_008437782.1|8.4e-10482.99PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo][more]
gi|778676650|ref|XP_011650631.1|1.1e-8283.67PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus][more]
gi|802596489|ref|XP_012072278.1|3.3e-7668.07PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas][more]
gi|720012470|ref|XP_010259874.1|2.8e-7568.84PREDICTED: uncharacterized protein LOC104599161 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006364 rRNA processing
biological_process GO:0031564 transcription antitermination
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G000210.1ClCG05G000210.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 76..211
score: 16
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 78..207
score: 5.8
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMsTIGR00250TIGR00250coord: 79..207
score: 1.3
IPR006641YqgF/RNase H-like domainGENE3DG3DSA:3.30.420.140coord: 78..208
score: 1.8
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 76..176
score: 1.9
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 77..207
score: 7.89
NoneNo IPR availablePANTHERPTHR33317FAMILY NOT NAMEDcoord: 59..238
score: 9.5E
NoneNo IPR availablePANTHERPTHR33317:SF2HOLLIDAY JUNCTION RESOLVASE-RELATEDcoord: 59..238
score: 9.5E