CSPI03G07240 (gene) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAGATTTGAAACAATTGATTGATTAGGTTTTGGTTTGGATTTATTTAATTGGAATTATGATAAAGATTTGAATAAAGGAGTAGTGGAAAAATGAGGATTTTGGCGGGGGGGTTGTGATTTGTTAAAGAGCTCCGATCCATTGTTTGCATAGGTTCTTGAAATCCCCAATTCCCACCAATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTACTCCATCTTCACCGGCCCTAGTTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTAATTTTTTTTTTCATTCTTCCCTTTCTGCGTTTCTCTCTACCTTCTAATTTCACCACATTCATCATTCAACCTCTCCACTCTTTTCTGCATATTTTCATTTCTCCTCATTTTTGCCTTTTTAACTCAATCACGGTTCATGTTCTTATTCAATTTCATTTCTTCTGGGATATAACTGTTTATAATGTGGCCAACGGCAGACTGCTATTTATTATATTGAAACTATCCTGCGTTTGGGACTCATGATTTCTTTTCCTGCCTTAGGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGTATATATATCTCTCCCTCTCCGACCATCTTCCTAATGAAATGCTATCAACATGTTGTAACTTTATTTCTTCTGTTTACTTGCACATTAATTGATGGAAAAAAAAACTTTAGGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGTGAAGTACACCGAATGCTTGTACTGTCTCTCCGATGTCTTTCTTTCTGTACTAATACTGCTTTTAGTTTAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGTATTGTTGTCCCCAACACTCACTTATGTTGTCTTTTGTTTAATATTGTTTCCTTGGATCCTATCCTATAAATCTAGGTTCATCTCCTTTATCAGTATTGTTAGTGTGGATTCTGTTGCCTGTAAACTATATATTGCACTTAGGAGCTGTTTGGAGAGCTAATTTACTGGGTATCAGAGGAGTATTGGGTATCATGAATTTATCAAGGTGATGCAGACAATTGGCTGTTAATTGCTATGGTATAATGTATTATTGGGATGTGTAGGAATGGAGGAGATAAACACTGAGATAAGAATTTTGAAAAAACTTGTCCCAAAATTTAAAAAGAAAACGAAACATTTAAGAAGTGCAGTTATCACCGGTAATTAAGAAATATATGGCTTGAGGATTCAATAGTCAATGATGTGGCGGTGATCACATTCTGGTTCAATTGCCCAAAATAAACAGTAGGTTCCCAATTATATTTCCCTTCATTCCAAATAGGCAGACTAGTGCTCGAACCAACTCCAAGAGCATTGGGATGGAATCATCTACTGTTTGTGGTAGAAACTTGTTGACGAAAGCTCTTTTCTGTGGCTTGAATGTCGCTCAATGTTTGCAAAGCACTCCTTTGATATTTATGGCTGATAAAAAACAACAGAATTTTTAAAGAGAAATATGAGTGAACAGATTTGTTGGATTTAGTACATCTCCATATTTTCTTTCTTTAATTACTCTGAGTTTCCATCTACAGCTAGTTGGGAATCACTGTTGAATCTCCTTGGCTTGGGCTGGGGGACACGTCACAGTCTTTGGTGCACTTTTCTAATCAATTGGAGTTCACCATTTCCTACTATAAAAAGAAAAGGAGAATTTGACTGAGGAAAACAAAATCTGTAAGACTTAAGATAAATACCTTTAATGGAAACCTGGATTTTCTGAAAATAGGGGTTGAAACATCTTTTAGTTTCTAAGGTTTTGCTTCTTTTCTTGAAGAATTGGTGGCATTACAACCCTATTAATGGTCGTTGTCATAATCTTCTACCGAAGCTCAAAGGTTTTAAGTTGGCTTTTAAAGCATGGAACTCCACCTTTGGGCTTTGGGTGTCTCTCTTATATGAAAATTAATCTCCAGAAGACCCTAGCGACCCTCGATGTTGTGGAAGATCAATGGTCTCTTGATCCCCCATCTTTTCAAAAGCACACTGAAATTAGCGAAGTTTTTCAAGTCCAAGTAGTTGTTTGAGTGATGAAGCTCAACTTATTTCAATCAAATCATGGCTAGTAAGCAATAGTAGGAAAAACATCATCTTGATCCTTGGTAAATATAGGTTCAATAATTTAAATGACAAAGAAATAGAAGAGCTACCGAGAAAGCCGGTTTGAGATTCACACCACACGCAAAATAGTTGGGGATTACAAACCAAACACTCTTATTAGATGTTTATACAAGATTTTAGCAATAGTTTTCACTTAAAAGTTGAAGAAAGCTCTTCCTTATACCATAACTAAATTCCAATCAGCCTTTGTGGAAAATAAGATAAATCATAGGTACTTCACTTATTGCAAATTAGCTTACTGATGAATGAGGGAGCAAAGCAGAAGTAGGATTGAATGACGTGAATGATGGAGAACCTAGTATTTCTTTTTTTAAAAGGGGACGGCCTCTTACTAGTATAATAATAATGTGACAAAAGCTCATAGTACAATTATACAATGAGCATGTAACCATGGATTAGGAGGTGCACCTGGGCTTCTCAACTAGGTTGACATCCCTATGGCACCCTCATCATATTCAAACAAGCTAAAAACCAAAACAAAAGAGTAATGTCCAAAAGCAAAATGAAACCAAAAGAAGTACAAAGAAATACAAATCAAAAGAGGAATGTCTCAAGATCCTTGGTGAAGGAACACCACGAGGAGGCTAAAAGTTGATGACTCCATTGAAGTGTTATGCTGAGAAGCTTGCTCGAAAAAAAATCTCTAGGATCTTCCCAAACACAATTCTGATAACGATGCAAACAAGTTGAGAATAAGCAATCAAAACCAAGTTCTGTGAAGAGTCACTAGCGGCTGAGCAAAAGTGCAGATTGAAGGAGACAAACAGTGACCAAAAGCCATTTTCCAAACTAGATTAACAATTCGACGTAGACTTCTCTAATCCCATCGAATTTTTCCCACTTTAATTTAGAGGAATGAATTAACTCAAAAAATTTCCAACCGGAGCCAACGACCACTAACTTTAGTTGATTATAACCCTTTCTTTCCAGTGTGACTAAAGTTGGCTTTCCTACCCTTCTTTCCTTCACTTCTTTTGTAGGTTCAATGATCTATGAAATTGGTCGGTTTCTTATTGAAAGATAAAATAATAATATCTTGTATCAGCAGATCTATACTTTTCTATTTGGATTGGTCACGTATAATGACGTATCCTAATCGAACAAAATATGAATATGGAAAATTGATATATATTTTTTTTAATGTTTTCTTTAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGGTAAAGTGGTGAATATTGTCATGTTTTTTAACATTGGGATGATAGTAAATGCAGCAATCCAGTCGTATGTTGTTTTTAGAAACAATAGTCTGACATTTTACTTTCTTTATTTGACGCAGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGAGGATGTGCTTCAGGTACGGAAAAATAATCTGGGAGAGCCCCTTAGGGAATTTTTTCTTTGACGGATAACAAAATTGCTATCAAACAAAGATATTTATTTCTGTTGAAGTGGAAGAGAGCCGCAATCAACTTAGAAATGGAGGGTTGCATCCTCAAAACATGGTCACGGAATTAGGTGAAAAGAGAGATACCACCGTTCCTAATGAGAAGGGTTCAGTTGAAGGCGATGATGCTTTTGACATTATATGTTTATAACAACCTTATCAGAATCATCCTCACATATTGAATTCACCTACACATTGGTTAGTTAAGGATGGGATTTGCCTTGGTCCGTCCTATGCAATTGTGCTTGTCCTTGATCAGAAAAGTAGCGGAAGAAAAAAAGAAAGGATCTGCTGAATCTCGTATGTATGTACTTGGTTGAAATTATTTATAAACAAAGAAATTGATTTAAAAATGGTGCTTTGGTAAGCTAACACTGTGGTAAAGCGG ATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTACTCCATCTTCACCGGCCCTAGTTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGA ATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTACTCCATCTTCACCGGCCCTAGTTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGA
BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_NOCSJ (Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 4.4e-12 Identity = 51/142 (35.92%), Postives = 75/142 (52.82%), Query Frame = 1
BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_SALNS (Putative pre-16S rRNA nuclease OS=Salmonella newport (strain SL254) GN=yqgF PE=3 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_SALTY (Putative pre-16S rRNA nuclease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yqgF PE=3 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_ECO5E (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yqgF PE=3 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.7e-11 Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1
BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_SALA4 (Putative pre-16S rRNA nuclease OS=Salmonella agona (strain SL483) GN=yqgF PE=3 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 3.7e-11 Identity = 44/132 (33.33%), Postives = 73/132 (55.30%), Query Frame = 1
BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1) HSP 1 Score: 469.5 bits (1207), Expect = 2.3e-129 Identity = 233/235 (99.15%), Postives = 234/235 (99.57%), Query Frame = 1
BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0B2QT40_GLYSO (Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 1.5e-75 Identity = 148/213 (69.48%), Postives = 175/213 (82.16%), Query Frame = 1
BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0R0KEA6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1) HSP 1 Score: 290.8 bits (743), Expect = 1.5e-75 Identity = 148/213 (69.48%), Postives = 175/213 (82.16%), Query Frame = 1
BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0S3SXV5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=3 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 9.6e-75 Identity = 142/186 (76.34%), Postives = 161/186 (86.56%), Query Frame = 1
BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0L9VR24_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 9.6e-75 Identity = 142/186 (76.34%), Postives = 161/186 (86.56%), Query Frame = 1
BLAST of CSPI03G07240 vs. TAIR10
Match: AT1G12244.1 (AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein) HSP 1 Score: 265.0 bits (676), Expect = 4.4e-71 Identity = 126/180 (70.00%), Postives = 155/180 (86.11%), Query Frame = 1
BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus]) HSP 1 Score: 469.5 bits (1207), Expect = 3.3e-129 Identity = 233/235 (99.15%), Postives = 234/235 (99.57%), Query Frame = 1
BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo]) HSP 1 Score: 442.2 bits (1136), Expect = 5.7e-121 Identity = 220/235 (93.62%), Postives = 225/235 (95.74%), Query Frame = 1
BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|778676650|ref|XP_011650631.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus]) HSP 1 Score: 389.0 bits (998), Expect = 5.7e-105 Identity = 193/196 (98.47%), Postives = 195/196 (99.49%), Query Frame = 1
BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|778676652|ref|XP_011650632.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus]) HSP 1 Score: 356.7 bits (914), Expect = 3.2e-95 Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 1
BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|356506432|ref|XP_003521987.1| (PREDICTED: putative pre-16S rRNA nuclease [Glycine max]) HSP 1 Score: 290.8 bits (743), Expect = 2.1e-75 Identity = 148/213 (69.48%), Postives = 175/213 (82.16%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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