CSPI03G07240 (gene) Wild cucumber (PI 183967)

NameCSPI03G07240
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionHolliday junction resolvase-like protein
LocationChr3 : 6428846 .. 6433261 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGATTTGAAACAATTGATTGATTAGGTTTTGGTTTGGATTTATTTAATTGGAATTATGATAAAGATTTGAATAAAGGAGTAGTGGAAAAATGAGGATTTTGGCGGGGGGGTTGTGATTTGTTAAAGAGCTCCGATCCATTGTTTGCATAGGTTCTTGAAATCCCCAATTCCCACCAATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTACTCCATCTTCACCGGCCCTAGTTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTAATTTTTTTTTTCATTCTTCCCTTTCTGCGTTTCTCTCTACCTTCTAATTTCACCACATTCATCATTCAACCTCTCCACTCTTTTCTGCATATTTTCATTTCTCCTCATTTTTGCCTTTTTAACTCAATCACGGTTCATGTTCTTATTCAATTTCATTTCTTCTGGGATATAACTGTTTATAATGTGGCCAACGGCAGACTGCTATTTATTATATTGAAACTATCCTGCGTTTGGGACTCATGATTTCTTTTCCTGCCTTAGGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGTATATATATCTCTCCCTCTCCGACCATCTTCCTAATGAAATGCTATCAACATGTTGTAACTTTATTTCTTCTGTTTACTTGCACATTAATTGATGGAAAAAAAAACTTTAGGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGTGAAGTACACCGAATGCTTGTACTGTCTCTCCGATGTCTTTCTTTCTGTACTAATACTGCTTTTAGTTTAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGTATTGTTGTCCCCAACACTCACTTATGTTGTCTTTTGTTTAATATTGTTTCCTTGGATCCTATCCTATAAATCTAGGTTCATCTCCTTTATCAGTATTGTTAGTGTGGATTCTGTTGCCTGTAAACTATATATTGCACTTAGGAGCTGTTTGGAGAGCTAATTTACTGGGTATCAGAGGAGTATTGGGTATCATGAATTTATCAAGGTGATGCAGACAATTGGCTGTTAATTGCTATGGTATAATGTATTATTGGGATGTGTAGGAATGGAGGAGATAAACACTGAGATAAGAATTTTGAAAAAACTTGTCCCAAAATTTAAAAAGAAAACGAAACATTTAAGAAGTGCAGTTATCACCGGTAATTAAGAAATATATGGCTTGAGGATTCAATAGTCAATGATGTGGCGGTGATCACATTCTGGTTCAATTGCCCAAAATAAACAGTAGGTTCCCAATTATATTTCCCTTCATTCCAAATAGGCAGACTAGTGCTCGAACCAACTCCAAGAGCATTGGGATGGAATCATCTACTGTTTGTGGTAGAAACTTGTTGACGAAAGCTCTTTTCTGTGGCTTGAATGTCGCTCAATGTTTGCAAAGCACTCCTTTGATATTTATGGCTGATAAAAAACAACAGAATTTTTAAAGAGAAATATGAGTGAACAGATTTGTTGGATTTAGTACATCTCCATATTTTCTTTCTTTAATTACTCTGAGTTTCCATCTACAGCTAGTTGGGAATCACTGTTGAATCTCCTTGGCTTGGGCTGGGGGACACGTCACAGTCTTTGGTGCACTTTTCTAATCAATTGGAGTTCACCATTTCCTACTATAAAAAGAAAAGGAGAATTTGACTGAGGAAAACAAAATCTGTAAGACTTAAGATAAATACCTTTAATGGAAACCTGGATTTTCTGAAAATAGGGGTTGAAACATCTTTTAGTTTCTAAGGTTTTGCTTCTTTTCTTGAAGAATTGGTGGCATTACAACCCTATTAATGGTCGTTGTCATAATCTTCTACCGAAGCTCAAAGGTTTTAAGTTGGCTTTTAAAGCATGGAACTCCACCTTTGGGCTTTGGGTGTCTCTCTTATATGAAAATTAATCTCCAGAAGACCCTAGCGACCCTCGATGTTGTGGAAGATCAATGGTCTCTTGATCCCCCATCTTTTCAAAAGCACACTGAAATTAGCGAAGTTTTTCAAGTCCAAGTAGTTGTTTGAGTGATGAAGCTCAACTTATTTCAATCAAATCATGGCTAGTAAGCAATAGTAGGAAAAACATCATCTTGATCCTTGGTAAATATAGGTTCAATAATTTAAATGACAAAGAAATAGAAGAGCTACCGAGAAAGCCGGTTTGAGATTCACACCACACGCAAAATAGTTGGGGATTACAAACCAAACACTCTTATTAGATGTTTATACAAGATTTTAGCAATAGTTTTCACTTAAAAGTTGAAGAAAGCTCTTCCTTATACCATAACTAAATTCCAATCAGCCTTTGTGGAAAATAAGATAAATCATAGGTACTTCACTTATTGCAAATTAGCTTACTGATGAATGAGGGAGCAAAGCAGAAGTAGGATTGAATGACGTGAATGATGGAGAACCTAGTATTTCTTTTTTTAAAAGGGGACGGCCTCTTACTAGTATAATAATAATGTGACAAAAGCTCATAGTACAATTATACAATGAGCATGTAACCATGGATTAGGAGGTGCACCTGGGCTTCTCAACTAGGTTGACATCCCTATGGCACCCTCATCATATTCAAACAAGCTAAAAACCAAAACAAAAGAGTAATGTCCAAAAGCAAAATGAAACCAAAAGAAGTACAAAGAAATACAAATCAAAAGAGGAATGTCTCAAGATCCTTGGTGAAGGAACACCACGAGGAGGCTAAAAGTTGATGACTCCATTGAAGTGTTATGCTGAGAAGCTTGCTCGAAAAAAAATCTCTAGGATCTTCCCAAACACAATTCTGATAACGATGCAAACAAGTTGAGAATAAGCAATCAAAACCAAGTTCTGTGAAGAGTCACTAGCGGCTGAGCAAAAGTGCAGATTGAAGGAGACAAACAGTGACCAAAAGCCATTTTCCAAACTAGATTAACAATTCGACGTAGACTTCTCTAATCCCATCGAATTTTTCCCACTTTAATTTAGAGGAATGAATTAACTCAAAAAATTTCCAACCGGAGCCAACGACCACTAACTTTAGTTGATTATAACCCTTTCTTTCCAGTGTGACTAAAGTTGGCTTTCCTACCCTTCTTTCCTTCACTTCTTTTGTAGGTTCAATGATCTATGAAATTGGTCGGTTTCTTATTGAAAGATAAAATAATAATATCTTGTATCAGCAGATCTATACTTTTCTATTTGGATTGGTCACGTATAATGACGTATCCTAATCGAACAAAATATGAATATGGAAAATTGATATATATTTTTTTTAATGTTTTCTTTAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGGTAAAGTGGTGAATATTGTCATGTTTTTTAACATTGGGATGATAGTAAATGCAGCAATCCAGTCGTATGTTGTTTTTAGAAACAATAGTCTGACATTTTACTTTCTTTATTTGACGCAGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGAGGATGTGCTTCAGGTACGGAAAAATAATCTGGGAGAGCCCCTTAGGGAATTTTTTCTTTGACGGATAACAAAATTGCTATCAAACAAAGATATTTATTTCTGTTGAAGTGGAAGAGAGCCGCAATCAACTTAGAAATGGAGGGTTGCATCCTCAAAACATGGTCACGGAATTAGGTGAAAAGAGAGATACCACCGTTCCTAATGAGAAGGGTTCAGTTGAAGGCGATGATGCTTTTGACATTATATGTTTATAACAACCTTATCAGAATCATCCTCACATATTGAATTCACCTACACATTGGTTAGTTAAGGATGGGATTTGCCTTGGTCCGTCCTATGCAATTGTGCTTGTCCTTGATCAGAAAAGTAGCGGAAGAAAAAAAGAAAGGATCTGCTGAATCTCGTATGTATGTACTTGGTTGAAATTATTTATAAACAAAGAAATTGATTTAAAAATGGTGCTTTGGTAAGCTAACACTGTGGTAAAGCGG

mRNA sequence

ATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTACTCCATCTTCACCGGCCCTAGTTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGA

Coding sequence (CDS)

ATGTTTACGTGGTCGAGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAACCCACAAATTACTTCACTCCCTCCATCCTCATCTGCCTACTCCATCTTCACCGGCCCTAGTTTCCAAATCCCATAACAACAACCCAATTTCTTCCATTGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTCAGTAAAGGCTTCTCTACTCGGCCTCTTACCGTTTTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTTATTGAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGACGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTACTTGTATGATGAACATGGTACAACAGCAGAAGCGGAAAGCCATATGATTTCCAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCGGCCATGATGGTACTAGAGAGATATTTTTCCACGTCAGGTCAGGGAACCGAACTTTTAGTGCCTAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGGCCACCTACAGACCCAGACTTTAGGGATTGA
BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_NOCSJ (Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-12
Identity = 51/142 (35.92%), Postives = 75/142 (52.82%), Query Frame = 1

Query: 69  RGGFSLGVDLGTSRTGLALS--KGFSTRPL-TVLELRGQKLEAKLIEIAEQEEAD---EF 128
           R G  +G+D G +R G+A S   GF   P+ TV   +G       I  AE++E     E 
Sbjct: 2   RAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEV 61

Query: 129 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNK 188
           ++GLP+S  G+E P + K+R  AGR+AAR A     V L DE  TT  AE+ +  +G   
Sbjct: 62  VVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTTVSAEAMLRDQGRTG 121

Query: 189 STRQKKIDAYAAMMVLERYFST 205
             R+  +D  AA+++L+    T
Sbjct: 122 GKRRAVVDQAAAVLILQHALDT 141

BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_SALNS (Putative pre-16S rRNA nuclease OS=Salmonella newport (strain SL254) GN=yqgF PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1

Query: 71  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEAKLIE-IAEQEEADEFIIGLP 130
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62

Query: 131 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQK 190
            + DG E P + + R  A R+  R    G  V L+DE  +T EA S +  RG  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 122

Query: 191 KIDAYAAMMVLERYF 203
           K+D+ +A+++LE YF
Sbjct: 123 KVDSASAVIILESYF 134

BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_SALTY (Putative pre-16S rRNA nuclease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yqgF PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1

Query: 71  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEAKLIE-IAEQEEADEFIIGLP 130
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62

Query: 131 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQK 190
            + DG E P + + R  A R+  R    G  V L+DE  +T EA S +  RG  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 122

Query: 191 KIDAYAAMMVLERYF 203
           K+D+ +A+++LE YF
Sbjct: 123 KVDSASAVIILESYF 134

BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_ECO5E (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yqgF PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-11
Identity = 45/135 (33.33%), Postives = 74/135 (54.81%), Query Frame = 1

Query: 71  GFSLGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEAKLIE-IAEQEEADEFIIGLP 130
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 131 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQK 190
            + DG E P + + R  A R+  R    G  V L+DE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 191 KIDAYAAMMVLERYF 203
           KID+ +A+++LE YF
Sbjct: 123 KIDSASAVIILESYF 134

BLAST of CSPI03G07240 vs. Swiss-Prot
Match: YQGF_SALA4 (Putative pre-16S rRNA nuclease OS=Salmonella agona (strain SL483) GN=yqgF PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.7e-11
Identity = 44/132 (33.33%), Postives = 73/132 (55.30%), Query Frame = 1

Query: 74  LGVDLGTSRTGLALSKGFS--TRPLTVLELRGQKLEAKLIE-IAEQEEADEFIIGLPKSC 133
           L  D GT   G+A+ +  +   RPL  ++ +    +  LIE + ++ + DE I+GLP + 
Sbjct: 6   LAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNM 65

Query: 134 DGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKID 193
           DG E P + + R  A R+  R    G  V L+DE  +T EA S +  RG  ++  + K+D
Sbjct: 66  DGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 125

Query: 194 AYAAMMVLERYF 203
           + +A+++LE YF
Sbjct: 126 SASAVIILESYF 134

BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 2.3e-129
Identity = 233/235 (99.15%), Postives = 234/235 (99.57%), Query Frame = 1

Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPTPSSPALVSKSHNNNPISSIELPPNAL 60
           MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLP PSSPAL+SKSHNNNPISSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180

Query: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 236
           NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD
Sbjct: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0B2QT40_GLYSO (Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.5e-75
Identity = 148/213 (69.48%), Postives = 175/213 (82.16%), Query Frame = 1

Query: 28  LHPHLP----TPSSPALVSKSHNNNPISSI---ELPPNALRRKLDPHWRGGFSLGVDLGT 87
           L PH P    +PS+P+ V+  +    + ++   ELPPNALR+K +P WRGGFSLG+DLG 
Sbjct: 9   LPPHKPFLRCSPSNPSFVNGKNGYCRVKALTLDELPPNALRKKREPQWRGGFSLGLDLGL 68

Query: 88  SRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSCDGKETPQSNK 147
           +RTGLALSKGFS RPLTVLELRGQKLE ++I IAE+EE DEFIIGLPKS DGKETPQSNK
Sbjct: 69  ARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSNK 128

Query: 148 IRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLER 207
           +RS+AGR+A RAAERGWRVYL DEHGTT EA+  MI+  L+KS++QKK+DAYAAMMVLER
Sbjct: 129 VRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLER 188

Query: 208 YFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDF 234
           YFSTSGQGTEL++PK+L LQ KL  GPP D DF
Sbjct: 189 YFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 221

BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0R0KEA6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.5e-75
Identity = 148/213 (69.48%), Postives = 175/213 (82.16%), Query Frame = 1

Query: 28  LHPHLP----TPSSPALVSKSHNNNPISSI---ELPPNALRRKLDPHWRGGFSLGVDLGT 87
           L PH P    +PS+P+ V+  +    + ++   ELPPNALR+K +P WRGGFSLG+DLG 
Sbjct: 9   LPPHKPFLRCSPSNPSFVNGKNGYCRVKALTLDELPPNALRKKREPQWRGGFSLGLDLGL 68

Query: 88  SRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSCDGKETPQSNK 147
           +RTGLALSKGFS RPLTVLELRGQKLE ++I IAE+EE DEFIIGLPKS DGKETPQSNK
Sbjct: 69  ARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSNK 128

Query: 148 IRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLER 207
           +RS+AGR+A RAAERGWRVYL DEHGTT EA+  MI+  L+KS++QKK+DAYAAMMVLER
Sbjct: 129 VRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLER 188

Query: 208 YFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDF 234
           YFSTSGQGTEL++PK+L LQ KL  GPP D DF
Sbjct: 189 YFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 221

BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0S3SXV5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 9.6e-75
Identity = 142/186 (76.34%), Postives = 161/186 (86.56%), Query Frame = 1

Query: 48  NPISSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE 107
           N +   ELPPNALRRK +P WRGGFSLG+DLG +RTGLALSKGFS RPLTVLELRGQKLE
Sbjct: 44  NALKLDELPPNALRRKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLE 103

Query: 108 AKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGT 167
            ++I IAEQEE DEFIIGLPKS DGKETPQSNK+RS+AGR+A +AAERGWRVYL DEHGT
Sbjct: 104 VQIINIAEQEEVDEFIIGLPKSADGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGT 163

Query: 168 TAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGP 227
           T+EA   MI+ GL+KS +QKK+DA+AAMMVLERYFSTSGQGTEL++PK+L LQ KL  GP
Sbjct: 164 TSEAMDRMINMGLSKSCQQKKLDAFAAMMVLERYFSTSGQGTELVLPKNLELQAKLQRGP 223

Query: 228 PTDPDF 234
           P D DF
Sbjct: 224 PKDVDF 229

BLAST of CSPI03G07240 vs. TrEMBL
Match: A0A0L9VR24_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 9.6e-75
Identity = 142/186 (76.34%), Postives = 161/186 (86.56%), Query Frame = 1

Query: 48  NPISSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE 107
           N +   ELPPNALRRK +P WRGGFSLG+DLG +RTGLALSKGFS RPLTVLELRGQKLE
Sbjct: 44  NALKLDELPPNALRRKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLE 103

Query: 108 AKLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGT 167
            ++I IAEQEE DEFIIGLPKS DGKETPQSNK+RS+AGR+A +AAERGWRVYL DEHGT
Sbjct: 104 VQIINIAEQEEVDEFIIGLPKSADGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGT 163

Query: 168 TAEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGP 227
           T+EA   MI+ GL+KS +QKK+DA+AAMMVLERYFSTSGQGTEL++PK+L LQ KL  GP
Sbjct: 164 TSEAMDRMINMGLSKSCQQKKLDAFAAMMVLERYFSTSGQGTELVLPKNLELQAKLQRGP 223

Query: 228 PTDPDF 234
           P D DF
Sbjct: 224 PKDVDF 229

BLAST of CSPI03G07240 vs. TAIR10
Match: AT1G12244.1 (AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 265.0 bits (676), Expect = 4.4e-71
Identity = 126/180 (70.00%), Postives = 155/180 (86.11%), Query Frame = 1

Query: 54  ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEI 113
           E+PPNA+RRK+D +WRGGFSLGVDLG SRTG+A+SKG++ +PLTVL+ RGQKLE +L+EI
Sbjct: 64  EIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRLLEI 123

Query: 114 AEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAES 173
           AE+EEADEFIIGLP+S DGKET QSNKIRS+AGR+A +AAERGWRVY++DEHGTT+EA  
Sbjct: 124 AEEEEADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASD 183

Query: 174 HMISRGLNKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDF 233
            MI  GL+KS RQ + DAYAA+++LERYFST G G E+++PKSL LQ K+  G P DPDF
Sbjct: 184 RMIVMGLSKSERQNRSDAYAAVILLERYFSTQGLGIEIILPKSLELQAKIKNGAPVDPDF 243

BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus])

HSP 1 Score: 469.5 bits (1207), Expect = 3.3e-129
Identity = 233/235 (99.15%), Postives = 234/235 (99.57%), Query Frame = 1

Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPTPSSPALVSKSHNNNPISSIELPPNAL 60
           MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLP PSSPAL+SKSHNNNPISSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180

Query: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 236
           NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD
Sbjct: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo])

HSP 1 Score: 442.2 bits (1136), Expect = 5.7e-121
Identity = 220/235 (93.62%), Postives = 225/235 (95.74%), Query Frame = 1

Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPTPSSPALVSKSHNNNPISSIELPPNAL 60
           MFT   GQCFQFQAFQFPLQ+H+LLHSLHPHLP PS PAL SKSHNNNP SSIELPPNAL
Sbjct: 38  MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 97

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLEAKLI+IAEQEEAD
Sbjct: 98  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 157

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS+GL
Sbjct: 158 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL 217

Query: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 236
           NKSTRQKKIDAYAAMMVLERYF  SGQGTELLVPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 218 NKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD 272

BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|778676650|ref|XP_011650631.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus])

HSP 1 Score: 389.0 bits (998), Expect = 5.7e-105
Identity = 193/196 (98.47%), Postives = 195/196 (99.49%), Query Frame = 1

Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPTPSSPALVSKSHNNNPISSIELPPNAL 60
           MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLP PSSPAL+SKSHNNNPISSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180

Query: 181 NKSTRQKKIDAYAAMM 197
           NKSTRQKKIDAYAAM+
Sbjct: 181 NKSTRQKKIDAYAAMV 196

BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|778676652|ref|XP_011650632.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 3.2e-95
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 1

Query: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPTPSSPALVSKSHNNNPISSIELPPNAL 60
           MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLP PSSPAL+SKSHNNNPISSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISR 179
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISR
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISR 178

BLAST of CSPI03G07240 vs. NCBI nr
Match: gi|356506432|ref|XP_003521987.1| (PREDICTED: putative pre-16S rRNA nuclease [Glycine max])

HSP 1 Score: 290.8 bits (743), Expect = 2.1e-75
Identity = 148/213 (69.48%), Postives = 175/213 (82.16%), Query Frame = 1

Query: 28  LHPHLP----TPSSPALVSKSHNNNPISSI---ELPPNALRRKLDPHWRGGFSLGVDLGT 87
           L PH P    +PS+P+ V+  +    + ++   ELPPNALR+K +P WRGGFSLG+DLG 
Sbjct: 9   LPPHKPFLRCSPSNPSFVNGKNGYCRVKALTLDELPPNALRKKREPQWRGGFSLGLDLGL 68

Query: 88  SRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSCDGKETPQSNK 147
           +RTGLALSKGFS RPLTVLELRGQKLE ++I IAE+EE DEFIIGLPKS DGKETPQSNK
Sbjct: 69  ARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSNK 128

Query: 148 IRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKIDAYAAMMVLER 207
           +RS+AGR+A RAAERGWRVYL DEHGTT EA+  MI+  L+KS++QKK+DAYAAMMVLER
Sbjct: 129 VRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLER 188

Query: 208 YFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDF 234
           YFSTSGQGTEL++PK+L LQ KL  GPP D DF
Sbjct: 189 YFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 221

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YQGF_NOCSJ4.4e-1235.92Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=N... [more]
YQGF_SALNS2.2e-1133.33Putative pre-16S rRNA nuclease OS=Salmonella newport (strain SL254) GN=yqgF PE=3... [more]
YQGF_SALTY2.2e-1133.33Putative pre-16S rRNA nuclease OS=Salmonella typhimurium (strain LT2 / SGSC1412 ... [more]
YQGF_ECO5E3.7e-1133.33Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC... [more]
YQGF_SALA43.7e-1133.33Putative pre-16S rRNA nuclease OS=Salmonella agona (strain SL483) GN=yqgF PE=3 S... [more]
Match NameE-valueIdentityDescription
A0A0A0L3L5_CUCSA2.3e-12999.15Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1[more]
A0A0B2QT40_GLYSO1.5e-7569.48Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1[more]
A0A0R0KEA6_SOYBN1.5e-7569.48Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1[more]
A0A0S3SXV5_PHAAN9.6e-7576.34Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=... [more]
A0A0L9VR24_PHAAN9.6e-7576.34Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G12244.14.4e-7170.00 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449431960|ref|XP_004133768.1|3.3e-12999.15PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus][more]
gi|659074761|ref|XP_008437782.1|5.7e-12193.62PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo][more]
gi|778676650|ref|XP_011650631.1|5.7e-10598.47PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus][more]
gi|778676652|ref|XP_011650632.1|3.2e-9598.88PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus][more]
gi|356506432|ref|XP_003521987.1|2.1e-7569.48PREDICTED: putative pre-16S rRNA nuclease [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
IPR012337RNaseH-like_sf
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006364 rRNA processing
biological_process GO:0031564 transcription antitermination
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G07240.2CSPI03G07240.2mRNA
CSPI03G07240.1CSPI03G07240.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 71..206
score: 17
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 73..203
score: 4.9
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMsTIGR00250TIGR00250coord: 74..202
score: 4.5
IPR006641YqgF/RNase H-like domainGENE3DG3DSA:3.30.420.140coord: 73..205
score: 6.7
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 71..171
score: 3.7
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 72..204
score: 3.79
NoneNo IPR availablePANTHERPTHR33317FAMILY NOT NAMEDcoord: 54..233
score: 2.0E
NoneNo IPR availablePANTHERPTHR33317:SF2HOLLIDAY JUNCTION RESOLVASE-RELATEDcoord: 54..233
score: 2.0E