Carg17687 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17687
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Holliday junction resolvase-like protein
Location	Cucurbita_argyrosperma_scaffold_119 : 849871 .. 855160 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAATGTGCGCGCTACATTTCCAACCCTTTCCGCTGCAAAGCCACAAACTTCACTCTTCCGCGATTTTCTGTCCTCCACGACCCTCTTCCCTTCCTCTTCTGCCTCCATCTCCTAACCTAATTTGCAAATGCAAAACCGCAATTTCCTCCGTCGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCGCAGTGGAGAGGAGGTTTCAGTCTAGGGGTTGACCTCGGAACGTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTTTCCACTCGTCCTCTTACTGTAATTTTTTCTGCCTATTACACTTTATTTGATTTCATTCCGCCGTCTCTGCGCTTTTCCCTACCCTCTAATTTCAGGACATTCAACTTCTCCACTGTTTTCCTACTTGCTTGTTTTTCTGTGGCATGGAAGTGCCTATTTTTCTGCCACATTTAGTGCTAAATGCGTAGTTAACGCAGTGATGATCGATACTCTTATTCAATTACGTTTCCTCTGGGACATAAGTGTTTATAATGTCGCGATCGGAAGACTGTTTCTACTTCGTAATTATTATTTATACAGTCCGCGACGCTCTATTTACACAGCTGCCTTAAACCCTTTGTTGTGTGTTATCAAATGTTTGGCCTTCATAATTTCTTTAGCTGGCTTAGGTTCTGGAGTTGCGAGGACAAAAGCTTGAGTTTAAGCTTATTGAGATTGCTGAACAGGAAGTATGCATCTCTCCCTCTCTCACGATATTGCTAATGAAATATTATCAACATGTGGAAATTTATTTCCTCTCTATATTGCACATTATTTGATGGAAAAAGGAAAAAACTGTAGGAAGCTGATGAATTTATTATTGGACTTCCTAAATCACTTGATGGAAAAGAGACACCTCATTCAAACAAAATCCGTAGTATTGCCGGAAGGGTGGCAGCCCAGGCAGCTGAAAGGTGAAATACACGGGATGATTGTATTTTATTTCTCCTATGTCTGCCTTTCTGTTCTGATACAGCTCTGACTTTAGGGGTTGGAGAGTTTACTTGCATGATGAACATGGGACAACAGCAGAAGCGGAAAGCCACATGATTTGCAGGTATTGTTGTCTTCAATATTCACTTATGTTGTCTTTTATTCAATATTGTTTCCGTGGATTCTATCCCATAAAGTCTCATGCATCTCCTTTATTGATATTGTTAGTGTGGAATCCTCCAAAATATATTGCACTGAATGGATTATCATTCAACATAGTGCCAGATTGATTTATTCATTTCCTTCGAGGATTTTGATGACAGATTTGAGGGGTTTGTAGAAATGATAGACTACCATGTGAAGATTCTTAGACTAATGAGGAATTAAAACTAATGTTAAACTCTACCATATTGTGGCATTAACCTCATGAATTTATCAAGGTGATGCAGAAAAAAGGTAGCCAATCGCTATGGTATTATTGGATAGGTAGGAATGGAGGATAAGAAGATAGGAAAGGCTTGGCTTGAAATGAAAAAAGAAATATCCAAGAAGTGCAATTATCCCCATCAGCTTGTAAACAAGAAATAAATGGCTTGAGGACTCAATAGTCAACGAGGTATTGGTGATCATGATTAGTTGCCAACTACATTTCTCTACATCCAAATATTAGGCTTGGCTTGAAATGAAAAAAGAAATATCCAAGAAGTGCAATTATCCCCATCAGCTTGTAAGCAAGGAATAAATGGCTTGAAGACTCAATAGTCAACGAGGTATTGGTGATCATGATTAGTTGCCAACGAGGTGTTGGTGATCATGATTAGTTGCCAACGAGGTATTGGTGATCCTGACTAGTTCCTAAGGATTTAGGAGGCCTGGATTCTCCCCAGGGAATTGGGATGCTATTTAAAAATATTTGCTAAAATCACCCCATCTAAATGGGGTGAAAGTTTTCTATTCATAATCATTTACATGAACAATAAATGGATACACGATATTAGGCTATGATCAAGGGTCAAATATGATAAATTATGGTAAACCGTAATTTAAGGCTAAATATCCTCAACACCCCCCCCCCCCACCCCACGTTGAGCGCTGGAATTGAACGAACGTTCAAAGAGAGGTCGAGAAACACTTTTGGTGGAGATGTCAGTAACCTGGAGATGGGAAGGTACATACTGTGTGCGAAGTTTGCCAGCAACAACAAGTTCTCGAAGGAATGATAATCTAGTTCAACATGCTTGGCTCTCTTGTGAGAAACGGGATTGGAGCTAAAAAAAATAGCACTTTTGTTGTCACATAAGAGCAAGAGCTATTGTGGAATGGGGACCTTGAGGTCATGCAAAAGATGCGTAAGCCAAAAAGTTCAGTAGCAGTCATGACAAGAGCACGATGCTCAAATTCACAGCTAGAGCATGAGACAGTAGGTTGCTTCTTGGCACTCCAAGAAACAAGATTGTTACCAAGATAAATGGAATATTTGATTGTAGAACGACGAGTATCGGGACAACCAACCCAGTCAGCATCTGCATAAGCCACTAGCGCACTAGGAACAACGGATGAATGAAAGGTAAGGTCAAAGTGGAGTGTTCTCTTAACATAGCGAAGAATACGCTTGACAGCAAGAAAGTGATCTGCATTAGGGACATGAAAAAATTTTCTGACAGAATTGACAACATGGGCAATATCTGGGCATGTAATGGTCATGTACTGAAGGACACCAACTAGTGGGTTCGTCCTCGATTGGAAGAGTACTGGGTGCGGTTCTTCCTCGACTAGTACTGAAGAGGGAGTCGACGACCCTGACTCGAGTGTGTTCGTCCTCGATTGGAAGAATTGTTGAGGTGGAAATGAGAATGACTTTGTTGGTTGCTACAAGAAGTAGGATGACTTCCATGGGTGCGACCATGATTAGTGGCTGTGAATATCGCAGGGGTGGAGTCAGAAGACTCAAGGGAGCACTAAAACAACTCAAAATTTTCAGTTTTAGAGATTAAATCTTCAAAATTTTCAGTTTTAGAGATTAAATCTTCAAAATAAGGGTAAGAGGCAAGAGCCATCTGAGCAATAGAAAAAGTTAAAAAAATTGGTGTCGAGTCCATGAAGAAACCAGTGTACTTTATCAATGTCCTCGACAGGTCTGTCAATGGCGTGAAGCTAGTCACAGATTGTTTTGAAGGTACAAACATACTCAGCAACAAGTTTGGTGCCGCGTTTCATTAGTTGCAAGTCATCCTTGAGTCTCATTTCACGGACTTTCGAATGATGGCTGAACGTAGTCTCCAATGCGAGCCAAAGTCATGTGCAGTGGAAAGACCAATGGCGGCAGCAATTGCTTCCTCAGTGAGAGAGGAGAGCATGAGACAAAGAAGTTATTAATCGGTTGCTTTCCACGCCAAAAATTTGGTGTTGAGTGTTGAGGAGGTTGTTGGTTCAAAGCGAGATGGTGAAACGGAGTTTCATCGTCGCCCAACATGTCTTAATTCTCAAGGAGAGGGAGTGATTAACCCAGCATGTCTTAAAATTCTCAAGGAGAGGGAGTGAACAGATTTGTTGGATTTAGCGCATCCTCTTGGATTTCCTTACACAATTTGTTTTTTTTTTTTTTTTTTTTTTTTAATTCAGATTTTCTTTCTAAAGCCAGTTGGGAACCCTTGTTGAATCAACTTGGCTTGGATTGGGGGATGCTCGCTAGTTTGGTCTACTTTTCCCATCAATTAGAGCCTATTATAAAAGGAAAAGGAGAACTTAATGAAGGCACACGAAATCTGTAAGAGAAAATGAATACCTTTGATGGGAACCTAGATTTATGATTGCAATCGAGAAAATAGGGGCTGAAACAAATTACTGTTCCTAAATATTCGGCTGCAACATCATCCTTTGCTTCTTTTTTGGAGAATTGGTGGAAGCATTACCCTATTTGTGGTTGCCGTGGTCATAGACTTATACCTACGTTCGAAGGTTCTAACTTGGCTTTTTTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGTTGTTGCATGGAGATTGGGAGACAATAAGGATCCGTGTCCCAGCCAACATTGGCCCCAAGTTTTGAGGTTACTATCTCTGTTAACAAGATTTTATGAACTACAAAAGAAAGGATATGCTTGCAGACATCTGTTTTACTCATCTCTAATATTTTTACCTATCAATCGTCTCCACTAAATGCTCTATTGATTTTATACTGGCAACCCCAACACTTCAACAATCTAAAAGAAACCATATTGTAACTGAGGGAGAGAAGCAAGTAACAGTGAATGGCGAGAATGATGGACAACCAAGTCAATTACTCGGAAGTTTGATTCTCTTGCGAACTTTTATATGAAACTGTGAGGGTTGTTGCATGGATAGTCACATTTTTGTCGCCTGTAGTCATTGATGTTATCAGTGTCCCTTTTGCTTTATTGTATTTGATGGTAGAGTAGAATGGAACGGTTTATGTTTAAAATGGGCCTTGCAGCTGTTCTTAGATTTTTCATTATGCAAATTAGATGCTTCGAAAAACAAGTTGATTTCTGATTGTTTTTAGATGTTTCTATTGCGGGTCTCTCTCAGTGTAAATTGACAGCTGTGGTTAAACTGTCTGTTGCATCAACTGGAAGAACTCTATGTAATCTTTTAGGCTTGGGGTTGGCTTTCCTCCCCCTCCTTTCTCCCACTTCTTTTCTAATGTCATATTATCTAGGAAATTGGTTGGTTTCTTATTGAAAAATAAACAATGATTTCCCCTTTGTATCAGAATATATCTATACTTATCTATTTGTGTTGGTCACATATATCATGTATAATGATGAACAAGACATGAATCTGGAAAATCGACTAACGATGTGACTAACGATGTTTTCTTCAGGGGGCTCAATAAAACTGCTCGGCAGAAGAAAATTGATGCCTATGCTGCCATGGTAAAGTGGTGAAAAGTTCTCATATTTATGAGCATTGGGTGATAAATGCTGCAATCCATGTCAGGCGCATATATTTTGTTTATAATTTTCTCAATACCTTTATTTGATGCAGATGGTACTAGAGAGATATTTTTCCATGTCAGGCGAGGGAACCGAACTTGTAGTGCCTAAGGGTCAAGTTTTACAGGAAAAGCTTATCGAGGGACCACCAATAGACCCTGACTTCAAGGATTAAGGACGTGCTTCAGGCAAGGAAAAAAATAAGCTGGAAAAGAGGCCCTCGGTCAACAAAGGTATTTGTCTGCTCAAGCTCAACTCTTAAAAAATTTTCAAAATAACTTCACTAAAAGAAAAAATAATATTCTTACTCTAAAACTATTAAACTATTTGTTTATATAGTAGT

mRNA sequence

AAATAATGTGCGCGCTACATTTCCAACCCTTTCCGCTGCAAAGCCACAAACTTCACTCTTCCGCGATTTTCTGTCCTCCACGACCCTCTTCCCTTCCTCTTCTGCCTCCATCTCCTAACCTAATTTGCAAATGCAAAACCGCAATTTCCTCCGTCGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCGCAGTGGAGAGGAGGTTTCAGTCTAGGGGTTGACCTCGGAACGTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTTTCCACTCGTCCTCTTACTGTTCTGGAGTTGCGAGGACAAAAGCTTGAGTTTAAGCTTATTGAGATTGCTGAACAGGAAGAAGCTGATGAATTTATTATTGGACTTCCTAAATCACTTGATGGAAAAGAGACACCTCATTCAAACAAAATCCGTAGTATTGCCGGAAGGGTGGCAGCCCAGGCAGCTGAAAGGGGTTGGAGAGTTTACTTGCATGATGAACATGGGACAACAGCAGAAGCGGAAAGCCACATGATTTGCAGGGGGCTCAATAAAACTGCTCGGCAGAAGAAAATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTCCATGTCAGGCGAGGGAACCGAACTTGTAGTGCCTAAGGGTCAAGTTTTACAGGAAAAGCTTATCGAGGGACCACCAATAGACCCTGACTTCAAGGATTAAGGACGTGCTTCAGGCAAGGAAAAAAATAAGCTGGAAAAGAGGCCCTCGGTCAACAAAGGTATTTGTCTGCTCAAGCTCAACTCTTAAAAAATTTTCAAAATAACTTCACTAAAAGAAAAAATAATATTCTTACTCTAAAACTATTAAACTATTTGTTTATATAGTAGT

Coding sequence (CDS)

ATGTGCGCGCTACATTTCCAACCCTTTCCGCTGCAAAGCCACAAACTTCACTCTTCCGCGATTTTCTGTCCTCCACGACCCTCTTCCCTTCCTCTTCTGCCTCCATCTCCTAACCTAATTTGCAAATGCAAAACCGCAATTTCCTCCGTCGAACTTCCTCCCAACGCCCTTCGCCGCAAGCTCGACCCGCAGTGGAGAGGAGGTTTCAGTCTAGGGGTTGACCTCGGAACGTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTTTCCACTCGTCCTCTTACTGTTCTGGAGTTGCGAGGACAAAAGCTTGAGTTTAAGCTTATTGAGATTGCTGAACAGGAAGAAGCTGATGAATTTATTATTGGACTTCCTAAATCACTTGATGGAAAAGAGACACCTCATTCAAACAAAATCCGTAGTATTGCCGGAAGGGTGGCAGCCCAGGCAGCTGAAAGGGGTTGGAGAGTTTACTTGCATGATGAACATGGGACAACAGCAGAAGCGGAAAGCCACATGATTTGCAGGGGGCTCAATAAAACTGCTCGGCAGAAGAAAATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTTCCATGTCAGGCGAGGGAACCGAACTTGTAGTGCCTAAGGGTCAAGTTTTACAGGAAAAGCTTATCGAGGGACCACCAATAGACCCTGACTTCAAGGATTAA

Protein sequence

MCALHFQPFPLQSHKLHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFIIGLPKSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD

Homology

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BLAST of Carg17687 vs. NCBI nr
Match: XP_022979278.1 (uncharacterized protein LOC111479048 [Cucurbita maxima])

HSP 1 Score: 461.8 bits (1187), Expect = 1.3e-126
Identity = 229/232 (98.71%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MCALHFQPFPLQSHKLHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRK 60
           MCALHFQPFPLQSHKLHSSAIFCPPRPSSLPLLPPSPNLICKC+TAISSVELPPNALRRK
Sbjct: 1   MCALHFQPFPLQSHKLHSSAIFCPPRPSSLPLLPPSPNLICKCRTAISSVELPPNALRRK 60

Query: 61  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFI 120
           LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFI
Sbjct: 61  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFI 120

Query: 121 IGLPKSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKT 180
           IGLPKSLDGKETP SNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKT
Sbjct: 121 IGLPKSLDGKETPQSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKT 180

Query: 181 ARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 233
            RQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD
Sbjct: 181 TRQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

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BLAST of Carg17687 vs. NCBI nr
Match: XP_022924794.1 (uncharacterized protein LOC111432185 [Cucurbita moschata])

HSP 1 Score: 461.1 bits (1185), Expect = 2.3e-126
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MCALHFQPFPLQSHKLHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRK 60
           MCALHFQPFPLQS KLHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRK
Sbjct: 1   MCALHFQPFPLQSDKLHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRK 60

Query: 61  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFI 120
           LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFI
Sbjct: 61  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFI 120

Query: 121 IGLPKSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKT 180
           IGLPKSLDGKETP SNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKT
Sbjct: 121 IGLPKSLDGKETPQSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKT 180

Query: 181 ARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 233
           ARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD
Sbjct: 181 ARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

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BLAST of Carg17687 vs. NCBI nr
Match: XP_023528266.1 (uncharacterized protein LOC111791236 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 460.3 bits (1183), Expect = 3.9e-126
Identity = 229/232 (98.71%), Postives = 229/232 (98.71%), Query Frame = 0


Query: 1   MCALHFQPFPLQSHKLHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRK 60
           MCALHFQPFP QSHKLHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRK
Sbjct: 1   MCALHFQPFPPQSHKLHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRK 60

Query: 61  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFI 120
           LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFI
Sbjct: 61  LDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFI 120

Query: 121 IGLPKSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKT 180
           IGLPKSLDGKETP SNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKT
Sbjct: 121 IGLPKSLDGKETPQSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKT 180

Query: 181 ARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 233
            RQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD
Sbjct: 181 TRQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 232

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BLAST of Carg17687 vs. NCBI nr
Match: XP_022144406.1 (uncharacterized protein LOC111014097 isoform X1 [Momordica charantia])

HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 190/240 (79.17%), Postives = 201/240 (83.75%), Query Frame = 0


Query: 1   MCALHFQPFPLQS-----HKLHSSAIFCPPRPSSLPLLPPSPNLICKCKT---AISSVEL 60
           M + HFQPFP QS      KL SS I   PR S+       P L C C +   AISS+EL
Sbjct: 1   MFSQHFQPFPPQSLIPSNQKLQSSTILWLPRCSTF----AQPILECNCVSETRAISSIEL 60

Query: 61  PPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAE 120
           PPNALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRG KLE KLIEIAE
Sbjct: 61  PPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGHKLEVKLIEIAE 120

Query: 121 QEEADEFIIGLPKSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHM 180
           QEEADEFIIGLPKS DGKETP SNKIRSIAGRVAA+AAERGWRVYLHDEHGTT+EAE+HM
Sbjct: 121 QEEADEFIIGLPKSSDGKETPQSNKIRSIAGRVAARAAERGWRVYLHDEHGTTSEAENHM 180

Query: 181 ICRGLNKTARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 233
           IC+GLNK+ RQKKIDAYAAMMVLERY+ MSG+GTELVVPK  VLQEKLIEGPP DPDFKD
Sbjct: 181 ICKGLNKSTRQKKIDAYAAMMVLERYYFMSGQGTELVVPKSLVLQEKLIEGPPTDPDFKD 236

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BLAST of Carg17687 vs. NCBI nr
Match: XP_004133768.1 (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus] >XP_011650630.1 PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus] >KGN56353.1 hypothetical protein Csa_3G116900 [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 2.1e-92
Identity = 185/225 (82.22%), Postives = 195/225 (86.67%), Query Frame = 0


Query: 9   FPLQSHK-LHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRKLDPQWRG 68
           FPLQ+HK LHS     PP PSS  L+  S N        ISS+ELPPNALRRKLDP WRG
Sbjct: 17  FPLQTHKLLHSLHPHLPP-PSSPALISKSHN-----NNPISSIELPPNALRRKLDPHWRG 76

Query: 69  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFIIGLPKSL 128
           GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEADEFIIGLPKS 
Sbjct: 77  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSC 136

Query: 129 DGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQKKID 188
           DGKETP SNKIRSIAGRVAA+AAERGWRVYL+DEHGTTAEAESHMI RGLNK+ RQKKID
Sbjct: 137 DGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKID 196

Query: 189 AYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 233
           AYAAMMVLERYFS SG+GTEL+VPK  VLQ+KLIEGPP DPDF+D
Sbjct: 197 AYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

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BLAST of Carg17687 vs. TAIR10
Match: AT1G12244.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 257.3 bits (656), Expect = 9.0e-69
Identity = 124/186 (66.67%), Postives = 155/186 (83.33%), Query Frame = 0


Query: 46  AISSV-ELPPNALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE 105
           A++S+ E+PPNA+RRK+D  WRGGFSLGVDLG SRTG+A+SKG++ +PLTVL+ RGQKLE
Sbjct: 58  AVTSIDEIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLE 117

Query: 106 FKLIEIAEQEEADEFIIGLPKSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGT 165
            +L+EIAE+EEADEFIIGLP+S DGKET  SNKIRS+AGR+A QAAERGWRVY+ DEHGT
Sbjct: 118 TRLLEIAEEEEADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGT 177

Query: 166 TAEAESHMICRGLNKTARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGP 225
           T+EA   MI  GL+K+ RQ + DAYAA+++LERYFS  G G E+++PK   LQ K+  G 
Sbjct: 178 TSEASDRMIVMGLSKSERQNRSDAYAAVILLERYFSTQGLGIEIILPKSLELQAKIKNGA 237

Query: 226 PIDPDF 231
           P+DPDF
Sbjct: 238 PVDPDF 243

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BLAST of Carg17687 vs. Swiss-Prot
Match: sp|A7MJR8|YQGF_CROS8 (Putative pre-16S rRNA nuclease OS=Cronobacter sakazakii (strain ATCC BAA-894) OX=290339 GN=yqgF PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-12
Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 0


Query: 68  GFSLGVDLGTSRTGLALSKGF--STRPLTVLELRGQKLEFKLIE-IAEQEEADEFIIGLP 127
           G  L  D GT   G+A+ +    + RPLT ++ +    ++ LIE + ++ + D+ I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDVIVGLP 62

Query: 128 KSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQK 187
            ++DG E P + + R+ A R+  +    G +V LHDE  +T EA + +  RG  +   + 
Sbjct: 63  LNMDGTEQPLTARARTFANRLHGRF---GIKVTLHDERLSTVEARAGLFERGGFRALNKG 122

Query: 188 KIDAYAAMMVLERYFSMSG 204
            +D+ +A+++LE YF   G
Sbjct: 123 SVDSASAVVILESYFEQHG 138

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BLAST of Carg17687 vs. Swiss-Prot
Match: sp|B4T5K4|YQGF_SALNS (Putative pre-16S rRNA nuclease OS=Salmonella newport (strain SL254) OX=423368 GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-12
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 68  GFSLGVDLGTSRTGLALSKGF--STRPLTVLELRGQKLEFKLIE-IAEQEEADEFIIGLP 127
           G  L  D GT   G+A+ +    + RPL  ++ +    ++ LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62

Query: 128 KSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQK 187
            ++DG E P + + R  A R+  +    G  V LHDE  +T EA S +  RG  +   + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 122

Query: 188 KIDAYAAMMVLERYF 200
           K+D+ +A+++LE YF
Sbjct: 123 KVDSASAVIILESYF 134

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BLAST of Carg17687 vs. Swiss-Prot
Match: sp|Q8ZM50|YQGF_SALTY (Putative pre-16S rRNA nuclease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-12
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 68  GFSLGVDLGTSRTGLALSKGF--STRPLTVLELRGQKLEFKLIE-IAEQEEADEFIIGLP 127
           G  L  D GT   G+A+ +    + RPL  ++ +    ++ LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62

Query: 128 KSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQK 187
            ++DG E P + + R  A R+  +    G  V LHDE  +T EA S +  RG  +   + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 122

Query: 188 KIDAYAAMMVLERYF 200
           K+D+ +A+++LE YF
Sbjct: 123 KVDSASAVIILESYF 134

[Close]

BLAST of Carg17687 vs. Swiss-Prot
Match: sp|Q8XCV0|YQGF_ECO57 (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 OX=83334 GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.7e-12
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 68  GFSLGVDLGTSRTGLALSKGF--STRPLTVLELRGQKLEFKLIE-IAEQEEADEFIIGLP 127
           G  L  D GT   G+A+ +    + RPL  ++ +    ++ LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 128 KSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQK 187
            ++DG E P + + R  A R+  +    G  V LHDE  +T EA S +  +G  +   + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 188 KIDAYAAMMVLERYF 200
           KID+ +A+++LE YF
Sbjct: 123 KIDSASAVIILESYF 134

[Close]

BLAST of Carg17687 vs. Swiss-Prot
Match: sp|B5YQE7|YQGF_ECO5E (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) OX=444450 GN=yqgF PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.7e-12
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 0


Query: 68  GFSLGVDLGTSRTGLALSKGF--STRPLTVLELRGQKLEFKLIE-IAEQEEADEFIIGLP 127
           G  L  D GT   G+A+ +    + RPL  ++ +    ++ LIE + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 128 KSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQK 187
            ++DG E P + + R  A R+  +    G  V LHDE  +T EA S +  +G  +   + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 188 KIDAYAAMMVLERYF 200
           KID+ +A+++LE YF
Sbjct: 123 KIDSASAVIILESYF 134

[Close]

BLAST of Carg17687 vs. TrEMBL
Match: tr|A0A0A0L3L5|A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 1.4e-92
Identity = 185/225 (82.22%), Postives = 195/225 (86.67%), Query Frame = 0


Query: 9   FPLQSHK-LHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPNALRRKLDPQWRG 68
           FPLQ+HK LHS     PP PSS  L+  S N        ISS+ELPPNALRRKLDP WRG
Sbjct: 17  FPLQTHKLLHSLHPHLPP-PSSPALISKSHN-----NNPISSIELPPNALRRKLDPHWRG 76

Query: 69  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFIIGLPKSL 128
           GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLE KLIEIAEQEEADEFIIGLPKS 
Sbjct: 77  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEADEFIIGLPKSC 136

Query: 129 DGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQKKID 188
           DGKETP SNKIRSIAGRVAA+AAERGWRVYL+DEHGTTAEAESHMI RGLNK+ RQKKID
Sbjct: 137 DGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGLNKSTRQKKID 196

Query: 189 AYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 233
           AYAAMMVLERYFS SG+GTEL+VPK  VLQ+KLIEGPP DPDF+D
Sbjct: 197 AYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

[Close]

BLAST of Carg17687 vs. TrEMBL
Match: tr|A0A1S3AUT7|A0A1S3AUT7_CUCME (uncharacterized protein LOC103483114 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483114 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 3.0e-90
Identity = 184/237 (77.64%), Postives = 195/237 (82.28%), Query Frame = 0


Query: 1   MCALHFQ----PFPLQSHK-LHSSAIFCPPRPSSLPLLPPSPNLICKCKTAISSVELPPN 60
           +C   FQ     FPLQSH+ LHS     PP PS   L   S N         SS+ELPPN
Sbjct: 42  LCGQCFQFQAFQFPLQSHRLLHSLHPHLPP-PSPPALFSKSHN-----NNPFSSIELPPN 101

Query: 61  ALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEE 120
           ALRRKLDP WRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLE KLI+IAEQEE
Sbjct: 102 ALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEE 161

Query: 121 ADEFIIGLPKSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICR 180
           ADEFIIGLPKS DGKETP SNKIRSIAGRVAA+AAERGWRVYL+DEHGTTAEAESHMI +
Sbjct: 162 ADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISK 221

Query: 181 GLNKTARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDFKD 233
           GLNK+ RQKKIDAYAAMMVLERYF MSG+GTEL+VPK  VLQ+KLIEGPP DPDFKD
Sbjct: 222 GLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD 272

[Close]

BLAST of Carg17687 vs. TrEMBL
Match: tr|A0A2P4HP09|A0A2P4HP09_QUESU (Putative pre-16s rrna nuclease OS=Quercus suber OX=58331 GN=CFP56_32757 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 9.3e-76
Identity = 154/223 (69.06%), Postives = 171/223 (76.68%), Query Frame = 0


Query: 10  PLQSHKLHSSAIFCPP--RPSSLPLLPPSPNLICKCKTAISSVELPPNALRRKLDPQWRG 69
           PLQ H L  +     P   P+SLPL             AIS  +LPPNAL RK DP WRG
Sbjct: 13  PLQPHFLSPNLTIHKPLNTPASLPLSSTKTRKYTPTLRAISLQQLPPNALHRKRDPNWRG 72

Query: 70  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFIIGLPKSL 129
           GFSLGVDLG SRTGLALSKGFS RPLTVLELRGQKLE +L++IA+QEEADEFIIGLPKS 
Sbjct: 73  GFSLGVDLGMSRTGLALSKGFSIRPLTVLELRGQKLELQLLQIAQQEEADEFIIGLPKSS 132

Query: 130 DGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQKKID 189
           DGKETP SNK+RS+AGR AA+AAERGWRVYL DEHGTT EA   MIC GL+++ RQ KID
Sbjct: 133 DGKETPQSNKVRSVAGRFAARAAERGWRVYLQDEHGTTTEATDRMICMGLSRSTRQSKID 192

Query: 190 AYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDF 231
           AYAAMMVLERYFS++G+ TELV+PK   LQEKL  GPP D DF
Sbjct: 193 AYAAMMVLERYFSLAGQETELVLPKNLDLQEKLKTGPPRDIDF 235

[Close]

BLAST of Carg17687 vs. TrEMBL
Match: tr|A0A2P4KL56|A0A2P4KL56_QUESU (Putative pre-16s rrna nuclease OS=Quercus suber OX=58331 GN=CFP56_30511 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 4.6e-75
Identity = 153/223 (68.61%), Postives = 171/223 (76.68%), Query Frame = 0


Query: 10  PLQSHKLHSSAIFCPP--RPSSLPLLPPSPNLICKCKTAISSVELPPNALRRKLDPQWRG 69
           PLQ H L  +     P   P+SLPL             AIS  +LPPNAL RK DP WRG
Sbjct: 13  PLQPHFLSPNPTTHKPVNTPASLPLSSTKTRNYTPTLRAISLQQLPPNALHRKRDPNWRG 72

Query: 70  GFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEEADEFIIGLPKSL 129
           GFSLGVDLG SRTGLALSKGFS RPLTVL+LRGQKLE +L++IA+QEEADEFIIGLPKS 
Sbjct: 73  GFSLGVDLGMSRTGLALSKGFSIRPLTVLDLRGQKLELQLLQIAQQEEADEFIIGLPKSS 132

Query: 130 DGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICRGLNKTARQKKID 189
           DGKETP SNK+RS+AGR AA+AAERGWRVYL DEHGTT EA   MIC GL+++ RQ KID
Sbjct: 133 DGKETPQSNKVRSVAGRFAARAAERGWRVYLQDEHGTTTEATDRMICMGLSRSTRQSKID 192

Query: 190 AYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDF 231
           AYAAMMVLERYFS++G+ TELV+PK   LQEKL  GPP D DF
Sbjct: 193 AYAAMMVLERYFSLAGQETELVLPKNLDLQEKLKTGPPRDIDF 235

[Close]

BLAST of Carg17687 vs. TrEMBL
Match: tr|A0A067KPF4|A0A067KPF4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04739 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.5e-73
Identity = 159/235 (67.66%), Postives = 181/235 (77.02%), Query Frame = 0


Query: 1   MCALHFQPFPLQSHKLHSSAIFCPPR----PSSLPL-LPPSPNLICKCKTAISSVELPPN 60
           MC+L   PF LQ  +L +S+I   PR    PSSL L LP +     + +  +S  E+PPN
Sbjct: 1   MCSLQ-NPF-LQLTELFTSSINSLPRVSNVPSSLRLPLPQTYKHGFRLRALLSIQEIPPN 60

Query: 61  ALRRKLDPQWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEFKLIEIAEQEE 120
           ALRRK D  WRGGFSLG+DLG SRTGLALSKGFS RPLTVLELRGQKLE +L+EIAE EE
Sbjct: 61  ALRRKSDSLWRGGFSLGIDLGLSRTGLALSKGFSFRPLTVLELRGQKLELRLLEIAEDEE 120

Query: 121 ADEFIIGLPKSLDGKETPHSNKIRSIAGRVAAQAAERGWRVYLHDEHGTTAEAESHMICR 180
           ADEFIIGLPKS DGKETP SNK+R +AGR+A +AAERGWRVYL DEHGT+ EA   MI  
Sbjct: 121 ADEFIIGLPKSSDGKETPQSNKVRCVAGRLAVRAAERGWRVYLQDEHGTSMEATYRMIDM 180

Query: 181 GLNKTARQKKIDAYAAMMVLERYFSMSGEGTELVVPKGQVLQEKLIEGPPIDPDF 231
           GL K+ARQK +DAYAA+MVLERYF MSGEGTELVVPK   LQ+KL +GPP D DF
Sbjct: 181 GLRKSARQKSVDAYAAVMVLERYFCMSGEGTELVVPKQLDLQDKLRKGPPKDLDF 233

The following BLAST results are available for this feature:

BLAST of Carg17687 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022979278.1	1.3e-126	98.71	uncharacterized protein LOC111479048 [Cucurbita maxima]	[more]
XP_022924794.1	2.3e-126	99.14	uncharacterized protein LOC111432185 [Cucurbita moschata]	[more]
XP_023528266.1	3.9e-126	98.71	uncharacterized protein LOC111791236 [Cucurbita pepo subsp. pepo]	[more]
XP_022144406.1	1.6e-95	79.17	uncharacterized protein LOC111014097 isoform X1 [Momordica charantia]	[more]
XP_004133768.1	2.1e-92	82.22	PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus] >XP...	[more]

BLAST of Carg17687 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12244.1	9.0e-69	66.67	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Carg17687 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|A7MJR8\|YQGF_CROS8	4.4e-12	31.65	Putative pre-16S rRNA nuclease OS=Cronobacter sakazakii (strain ATCC BAA-894) OX...	[more]
sp\|B4T5K4\|YQGF_SALNS	5.7e-12	33.33	Putative pre-16S rRNA nuclease OS=Salmonella newport (strain SL254) OX=423368 GN...	[more]
sp\|Q8ZM50\|YQGF_SALTY	5.7e-12	33.33	Putative pre-16S rRNA nuclease OS=Salmonella typhimurium (strain LT2 / SGSC1412 ...	[more]
sp\|Q8XCV0\|YQGF_ECO57	9.7e-12	33.33	Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 OX=83334 GN=yqgF PE=3...	[more]
sp\|B5YQE7\|YQGF_ECO5E	9.7e-12	33.33	Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC...	[more]

BLAST of Carg17687 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3L5\|A0A0A0L3L5_CUCSA	1.4e-92	82.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G116900 PE=3 SV=1	[more]
tr\|A0A1S3AUT7\|A0A1S3AUT7_CUCME	3.0e-90	77.64	uncharacterized protein LOC103483114 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P4HP09\|A0A2P4HP09_QUESU	9.3e-76	69.06	Putative pre-16s rrna nuclease OS=Quercus suber OX=58331 GN=CFP56_32757 PE=3 SV=...	[more]
tr\|A0A2P4KL56\|A0A2P4KL56_QUESU	4.6e-75	68.61	Putative pre-16s rrna nuclease OS=Quercus suber OX=58331 GN=CFP56_30511 PE=3 SV=...	[more]
tr\|A0A067KPF4\|A0A067KPF4_JATCU	1.5e-73	67.66	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04739 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006364	rRNA processing
GO:0006139	nucleobase-containing compound metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR037027	YqgF/RNaseH-like_dom_sf
IPR005227	YqgF
IPR006641	YqgF/RNaseH-like_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17687-RA	Carg17687-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 68..168 e-value: 7.7E-18 score: 75.3
IPR005227	Putative pre-16S rRNA nuclease	TIGRFAM	TIGR00250	TIGR00250	coord: 71..199 e-value: 3.4E-20 score: 70.4
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 70..200 e-value: 2.9E-27 score: 95.6
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 39..212
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 68..203 score: 16.49
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	G3DSA:3.30.420.140		coord: 67..202 e-value: 3.5E-29 score: 103.6
None	No IPR available	PANTHER	PTHR33317:SF2	HOLLIDAY JUNCTION RESOLVASE-RELATED	coord: 39..212
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 69..201

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17687	Csa3G116900	Cucumber (Chinese Long) v2	carcuB0144
Carg17687	MELO3C005958	Melon (DHL92) v3.5.1	carmeB0137
Carg17687	CSPI03G07240	Wild cucumber (PI 183967)	carcpiB0148
Carg17687	CmaCh14G021610	Cucurbita maxima (Rimu)	carcmaB0173
Carg17687	CmoCh14G022340	Cucurbita moschata (Rifu)	carcmoB0182
Carg17687	Cp4.1LG03g15570	Cucurbita pepo (Zucchini)	carcpeB0192
Carg17687	MELO3C005958.2	Melon (DHL92) v3.6.1	carmedB0141
Carg17687	CsaV3_3G007360	Cucumber (Chinese Long) v3	carcucB0152

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17687	Cucumber (Gy14) v2	carcgybB0143
Carg17687	Cucumber (Gy14) v1	carcgyB0165
Carg17687	Cucurbita maxima (Rimu)	carcmaB0177
Carg17687	Cucurbita moschata (Rifu)	carcmoB0185
Carg17687	Cucurbita pepo (Zucchini)	carcpeB0194
Carg17687	Wild cucumber (PI 183967)	carcpiB0149
Carg17687	Cucumber (Chinese Long) v2	carcuB0145
Carg17687	Cucumber (Chinese Long) v3	carcucB0153
Carg17687	Bottle gourd (USVL1VR-Ls)	carlsiB119
Carg17687	Melon (DHL92) v3.5.1	carmeB0138
Carg17687	Melon (DHL92) v3.6.1	carmedB0142
Carg17687	Watermelon (Charleston Gray)	carwcgB0128
Carg17687	Watermelon (97103) v1	carwmB0130
Carg17687	Watermelon (97103) v2	carwmbB0138
Carg17687	Wax gourd	carwgoB0166