MELO3C005958 (gene) Melon (DHL92) v3.5.1

NameMELO3C005958
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative Holliday junction resolvase
Locationchr6 : 215251 .. 219327 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCGGGGGGAGGGGTTGTGATTTGTGAAAGAGCTCCGATCCATTGTTTATGTTGGGTTTTGGAATCCCCAATTCCCCCAATTCTCCCAACCATGTTTACGTTGTTGTGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAAGCCACAGATTACTTCACTCCCTCCATCCTCATCTCCCTCCTCCATCTCCACCAGCCCTATTTTCCAAATCCCACAACAACAACCCATTTTCTTCCATTGAACTTCCTCCCAACGCCCTCCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCATTCGTCCTCTTACCGTAATTTTTTTTTCATTCTTCCCTTTATGCATTTCTCTCTACCTACTATTCTCACCACATTCATCATTCTACCTCTCCACTCTTTTCTGCATATTTTCATTTTCTCCTCAATTTTTCCTTTTTTTTTTTTTTTTAACTCAATCTTGATCCATGTTCTTATTCAATTTCATTTCTTTAACTGTTTATAATGTGGCCAACGGCGGACTGCTGTTTATTATATTGAAACTATCCTACGTTTGGGATTCATGATTTCTTTTGCTGCCTTAGGTTCTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTCATTCAGATTGCTGAACAGGAAGTATATATCTCTCTCCCTCTTCGACCATCTTCCTACTGAAAATGCTATCAACATGTTGGAAATTTATTTCTTCTTTTTACTTGCACATTAATTGATGGGAAATAAACTGTAGGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGTGAAATACACCGAATGCTTGTACTGCCTCTCCTATGTCTTTTGTTCTGTACTAATACTGCTTTTAGTTTAGGGGCTGGAGAGTTTATTTGTATGATGAACATGGGACAACAGCAGAAGCGGAAAGCCATATGATTTCCAAGTAATGTTGTCCTCAACACTCACTTATGTTGTCTTTGTTTAATATTGTTTCCTTGGATCCTATCCTATAAATTTTGGTTCATCTCCTTTATCAGTATTGTTAATATGGATTCTGTTGCCTGTAAACTATATTGCACTTAGGAGCTGTTTGGAGAGCTAGAATGTAGTGATTTACTGGGTATCAGAGGAGTATTAGGTATCATGAATTTATCAAGGTGATGCAGACAATTGGTTGTTAATTGCTATGGTAGGAATGGAGGAGATGGACACTGAGATAAAAAGGTACAAAAAATTGTCCAAAATGGAAAAGAAAACGAAACATTTAAGAAGTGCAGTTATCACCGGTAAATAAGAAATATATGGCTTGAGGATTTAATGGTCAACGAGGTGGCGGTGACCACATTCTGGTTTAATTGCCCAAAATAATCAGTTGGTTTCCAATTATATTTCCCTTCATTCCAAATAGGCAGACTAGTGCTCAAACCAACCCCAAGAGCATTGGGATGGAATCATCTACTGTTTGTGGTAGAAACTTGTTGACGAAAGCTCTTTTCTGTGGCTTGAATGTCGCTCAATGTTTGCAAAGCATTCCTTTGACATTTATGGCTGATAAAGAACAACAAATTTTTTGAAGAGAAATATGAGTGAACAGATTTGTTGGATTTAGTACATCTCCATATTTTCTTTTTTTAATTACTCTGAGTTTCCATCTATAGCTAGTTGGGAATCACTCTCCTTGGCTTGGGCTGGAGGACTCGTCACCTTTGGTGCAGTCTTCTAATCAATTGGAGTTCACCATTTCCTACTAAAAAAAGAAAAGGAGAATTTGACAAAGGCAAACAAAATCTGTAAGACTTGAGATAAAATGAATACCTTTGATGGAAACCTGGATTTTTTTTATTGCAATTGTGAAAATAGGGGTTGAAACATCTTATAGTTTCTAAATTTTTCTTCTTTTCTAGGAGAATTGGTGGCATAACGACCCTATTAGTGGTCATTGTCATAATCTTCTACCGAAGCTCAAAGGTTTTAAGTTGGCTTTTAAAGCATGGAACTCAACCTTTGGCTGTCTCTCTAATATTAAAACTAATCTCCGGAAGACCCTTGCTACGCTCAATTTTCTGGAAGATCAATGGTCTCTCGATTCCCCATCCTTTCAAAAGCACACTGAAATTAGCGCAGAGCTTTTTAAGTCCAAGTAGTTGGCTGAGTGATGAAGCTCAACTTATTTCAATCAAATCATGCCTAGTAAGAAATAGTAGGAAAAACACCATCTGGATCCTTGGTAAATATAGGTTCAACAATTTAAATGACAAAGAAATAGAAGAGGGCTTTGTTGATTTCTATAAACAGCTACCAAGAAAGCCGGTTTGAGATTCACCCCACACACAAAATGGTTGGGGATTACAAACCAAACGCTCTTATTAGATATTTATACAAGATTTTAGCAATAGTTTTCACTTAGAAGTTGAAGAAAGCTATTCCTTATACCATAACTAAATTCCAAACAGCCTTTGTGGCAAATAAGATAAATCATAGATACTTCACTTATTGCAAATTAGCTTATTGATGAATGAGGGAGCAAAGAAAAAGTAAGATTGAATGACGTGAATGATGGAGAACCTAGTCAATGACTAGAAATTTTGATACTCATGCAAATTTCTATATGAAACTGATGGAGAATGGACTCGTTTCTTGTGAGGGTTGTTGCATGGGTAGCAACACATTTTTGTGGCCTGTAATAATTGATGTTATCAGGTTTCGTTTTGCTTTTTTCACTTAATGGAAGAGAAGTGTAGAATGGGACAGCTTATATTTCAAATTGGCCTGGCGGCTGTTTTATTTTCTTTATGCAAATTAGGTGCATTGTTCACATGAGATAAAAAAAAATTGTTGTCCCACTAGTATTGGAAAGACTTCTTATTTTCTTTTACATATTTCTACTGTGGTTCTCTCTCAGTGTAAATTTTATGGCTCCCAGACCCTATCCATTCAACCGCTATGGTTAGATTGTTTGTTGCATCGACAGGAAGAACTCTGTAATTTTTCAGGCTTGTAGTCGGCTTTCCTACCCCTCTTTCCTCCACTTCTTTTGTAGTTTGAATGATCTATGAAATTGGTCGGTTTCTTATTGAAAAATAAAATAGTAATATCTTGTATCAGCAGATCTATACTTCTCTATTTGGATTGGTCACATATATCACGTATCATAATGGGGAATTAATTTTATTTTTTAATGTTTTCTTTAGGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCTGCCATGGTAAAGTGGGGGAATATTGTCATGTTTTTTAATATTGTGATGATAATAAATGCAGCAGTCCAGTCGTGTGTTCTTTTAAAAATAATTGTCTCTGACATTTTACTTTCTTTATTTGACGCAGATGGTACTAGAGAGATATTTTCTCATGTCAGGCCAGGGAACCGAACTTTTAGTGCCCAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGACCACCTACAGACCCAGACTTTAAGGATTGAGGATGTGCTTCAGGCCAGGAAAAAATAATCTGGGAGAGGCCCTTGGGGTATTTTTCTCTTTGACGGATAACAAAATTGCTATCAAACAAAGGGTATTTATTACTGTTGAAGTGGAAGAGAGCCGCAACCGACTTAGAAATGGAGGGTTACTTCCTCAAAGCATGGTCACGGAATTAGGTGAAAAGAGATACCGCTGTTCCTAATGAAGGCTCAATTGAAGGTTGCGGGTTGTGAGATGATGACGACGACGACGCTTTTGACATTATATCTTTATAACAATCTTGTCAGAATCTGTCCTCACATATTGAATTCACCTACACACTTCGGTTAGTTAAGGATGGGATTTGCTTTGGTCCGTCCTATGCACTTGTGCTTCTCCTTGATCGCCGAATCTCGTATGTACTTGGTTGAAATTATTTCTAAACGACGAAATTGATTAGATGCTGCAGTCATAATGA

mRNA sequence

GGCGGGGGGAGGGGTTGTGATTTGTGAAAGAGCTCCGATCCATTGTTTATGTTGGGTTTTGGAATCCCCAATTCCCCCAATTCTCCCAACCATGTTTACGTTGTTGTGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAAGCCACAGATTACTTCACTCCCTCCATCCTCATCTCCCTCCTCCATCTCCACCAGCCCTATTTTCCAAATCCCACAACAACAACCCATTTTCTTCCATTGAACTTCCTCCCAACGCCCTCCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCATTCGTCCTCTTACCGTTCTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTCATTCAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTATTTGTATGATGAACATGGGACAACAGCAGAAGCGGAAAGCCATATGATTTCCAAGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTCTCATGTCAGGCCAGGGAACCGAACTTTTAGTGCCCAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGACCACCTACAGACCCAGACTTTAAGGATTGAGGATGTGCTTCAGGCCAGGAAAAAATAATCTGGGAGAGGCCCTTGGGGTATTTTTCTCTTTGACGGATAACAAAATTGCTATCAAACAAAGGGTATTTATTACTGTTGAAGTGGAAGAGAGCCGCAACCGACTTAGAAATGGAGGGTTACTTCCTCAAAGCATGGTCACGGAATTAGGTGAAAAGAGATACCGCTGTTCCTAATGAAGGCTCAATTGAAGGTTGCGGGTTGTGAGATGATGACGACGACGACGCTTTTGACATTATATCTTTATAACAATCTTGTCAGAATCTGTCCTCACATATTGAATTCACCTACACACTTCGGTTAGTTAAGGATGGGATTTGCTTTGGTCCGTCCTATGCACTTGTGCTTCTCCTTGATCGCCGAATCTCGTATGTACTTGGTTGAAATTATTTCTAAACGACGAAATTGATTAGATGCTGCAGTCATAATGA

Coding sequence (CDS)

ATGTTTACGTTGTTGTGTGGACAATGTTTCCAATTCCAAGCCTTTCAGTTTCCGTTGCAAAGCCACAGATTACTTCACTCCCTCCATCCTCATCTCCCTCCTCCATCTCCACCAGCCCTATTTTCCAAATCCCACAACAACAACCCATTTTCTTCCATTGAACTTCCTCCCAACGCCCTCCGCCGCAAGCTCGATCCTCACTGGAGAGGAGGTTTCAGTCTAGGTGTCGACCTCGGAACCTCTCGCACTGGACTTGCTCTTAGTAAAGGCTTCTCCATTCGTCCTCTTACCGTTCTAGAGTTGCGAGGACAAAAGCTTGAGGCTAAGCTCATTCAGATTGCTGAACAGGAAGAGGCTGATGAATTTATTATTGGACTTCCTAAATCATGCGATGGGAAAGAGACACCTCAGTCAAACAAAATTCGTAGTATTGCCGGAAGGGTGGCAGCCCGAGCAGCTGAAAGGGGCTGGAGAGTTTATTTGTATGATGAACATGGGACAACAGCAGAAGCGGAAAGCCATATGATTTCCAAGGGTCTCAATAAATCTACTAGGCAGAAGAAGATTGATGCCTATGCTGCCATGATGGTACTAGAGAGATATTTTCTCATGTCAGGCCAGGGAACCGAACTTTTAGTGCCCAAGAGTCTAGTCTTACAAGATAAACTTATCGAGGGACCACCTACAGACCCAGACTTTAAGGATTGA

Protein sequence

MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD*
BLAST of MELO3C005958 vs. Swiss-Prot
Match: YQGF_NOCSJ (Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=Noca_2408 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.3e-12
Identity = 50/137 (36.50%), Postives = 72/137 (52.55%), Query Frame = 1

Query: 69  RGGFSLGVDLGTSRTGLALS--KGFSIRPL-TVLELRGQKLEAKLIQIAEQEEAD---EF 128
           R G  +G+D G +R G+A S   GF   P+ TV   +G       I  AE++E     E 
Sbjct: 2   RAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLEV 61

Query: 129 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGLNK 188
           ++GLP+S  G+E P + K+R  AGR+AAR A     V L DE  TT  AE+ +  +G   
Sbjct: 62  VVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTTVSAEAMLRDQGRTG 121

Query: 189 STRQKKIDAYAAMMVLE 200
             R+  +D  AA+++L+
Sbjct: 122 GKRRAVVDQAAAVLILQ 136

BLAST of MELO3C005958 vs. Swiss-Prot
Match: YQGF_ECO57 (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 GN=yqgF PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.8e-11
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 1

Query: 71  GFSLGVDLGTSRTGLALSKGFS--IRPLTVLELRGQKLEAKLIQ-IAEQEEADEFIIGLP 130
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LI+ + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 131 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGLNKSTRQK 190
            + DG E P + + R  A R+  R    G  V L+DE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 191 KIDAYAAMMVLERYF 203
           KID+ +A+++LE YF
Sbjct: 123 KIDSASAVIILESYF 134

BLAST of MELO3C005958 vs. Swiss-Prot
Match: YQGF_ECO5E (Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yqgF PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.8e-11
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 1

Query: 71  GFSLGVDLGTSRTGLALSKGFS--IRPLTVLELRGQKLEAKLIQ-IAEQEEADEFIIGLP 130
           G  L  D GT   G+A+ +  +   RPL  ++ +    +  LI+ + ++ + DE I+GLP
Sbjct: 3   GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62

Query: 131 KSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGLNKSTRQK 190
            + DG E P + + R  A R+  R    G  V L+DE  +T EA S +  +G  ++  + 
Sbjct: 63  LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 122

Query: 191 KIDAYAAMMVLERYF 203
           KID+ +A+++LE YF
Sbjct: 123 KIDSASAVIILESYF 134

BLAST of MELO3C005958 vs. Swiss-Prot
Match: YQGF_ANADE (Putative pre-16S rRNA nuclease OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=Adeh_1232 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-10
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 1

Query: 73  SLGVDLGTSRTGLALSKGF--SIRPLTVLELRGQKLE-AKLIQIAEQEEADEFIIGLPKS 132
           +LGVDLG  R GLA++     + R +T +  RG+  + A + ++A   E    ++GLP +
Sbjct: 3   TLGVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLPLN 62

Query: 133 CDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGLNKSTRQKKI 192
            DG E P +   R  A R+ A     G  V L+DE  ++ EAES + ++G++   ++ ++
Sbjct: 63  MDGTEGPSARLARGFAPRLEAAL---GVPVELFDERLSSFEAESRLRARGVSARDQRGQV 122

Query: 193 DAYAAMMVLE 200
           DA AA ++L+
Sbjct: 123 DAEAAAVILQ 129

BLAST of MELO3C005958 vs. Swiss-Prot
Match: YQGF_NITWN (Putative pre-16S rRNA nuclease OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=Nwi_2004 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-10
Identity = 46/137 (33.58%), Postives = 75/137 (54.74%), Query Frame = 1

Query: 67  HWRG-GFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEA---KLIQIAEQEEADEF 126
           HW   G  +G+DLGT   G+A+S         V  +R +   A   +L+ IA +  A+ F
Sbjct: 14  HWPARGALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLAIAGERRAEGF 73

Query: 127 IIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGLNK 186
           I+GLP + DG E P++   R+ A R  AR  +  + + L+DE  +TA  E  +I   +++
Sbjct: 74  ILGLPINMDGSEGPRAQSTRAFA-RNLARLTD--FAIGLWDERLSTAAVERELIGLDMSR 133

Query: 187 STRQKKIDAYAAMMVLE 200
           + R K ID +AA+ +L+
Sbjct: 134 ARRAKVIDEHAAIFILQ 147

BLAST of MELO3C005958 vs. TrEMBL
Match: A0A0A0L3L5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 3.3e-123
Identity = 221/235 (94.04%), Postives = 226/235 (96.17%), Query Frame = 1

Query: 1   MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 60
           MFT   GQCFQFQAFQFPLQ+H+LLHSLHPHLPPPS PAL SKSHNNNP SSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLEAKLI+IAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS+GL
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180

Query: 181 NKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD 236
           NKSTRQKKIDAYAAMMVLERYF  SGQGTELLVPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

BLAST of MELO3C005958 vs. TrEMBL
Match: A0A0R0KEA6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.1e-74
Identity = 146/213 (68.54%), Postives = 170/213 (79.81%), Query Frame = 1

Query: 28  LHPHLP----PPSPPALFSKSHNNNPFSSI---ELPPNALRRKLDPHWRGGFSLGVDLGT 87
           L PH P     PS P+  +  +      ++   ELPPNALR+K +P WRGGFSLG+DLG 
Sbjct: 9   LPPHKPFLRCSPSNPSFVNGKNGYCRVKALTLDELPPNALRKKREPQWRGGFSLGLDLGL 68

Query: 88  SRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEADEFIIGLPKSCDGKETPQSNK 147
           +RTGLALSKGFSIRPLTVLELRGQKLE ++I IAE+EE DEFIIGLPKS DGKETPQSNK
Sbjct: 69  ARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSNK 128

Query: 148 IRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGLNKSTRQKKIDAYAAMMVLER 207
           +RS+AGR+A RAAERGWRVYL DEHGTT EA+  MI+  L+KS++QKK+DAYAAMMVLER
Sbjct: 129 VRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLER 188

Query: 208 YFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDF 234
           YF  SGQGTEL++PK+L LQ KL  GPP D DF
Sbjct: 189 YFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 221

BLAST of MELO3C005958 vs. TrEMBL
Match: A0A0B2QT40_GLYSO (Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 8.1e-74
Identity = 146/213 (68.54%), Postives = 170/213 (79.81%), Query Frame = 1

Query: 28  LHPHLP----PPSPPALFSKSHNNNPFSSI---ELPPNALRRKLDPHWRGGFSLGVDLGT 87
           L PH P     PS P+  +  +      ++   ELPPNALR+K +P WRGGFSLG+DLG 
Sbjct: 9   LPPHKPFLRCSPSNPSFVNGKNGYCRVKALTLDELPPNALRKKREPQWRGGFSLGLDLGL 68

Query: 88  SRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEADEFIIGLPKSCDGKETPQSNK 147
           +RTGLALSKGFSIRPLTVLELRGQKLE ++I IAE+EE DEFIIGLPKS DGKETPQSNK
Sbjct: 69  ARTGLALSKGFSIRPLTVLELRGQKLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSNK 128

Query: 148 IRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGLNKSTRQKKIDAYAAMMVLER 207
           +RS+AGR+A RAAERGWRVYL DEHGTT EA+  MI+  L+KS++QKK+DAYAAMMVLER
Sbjct: 129 VRSVAGRLAVRAAERGWRVYLQDEHGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLER 188

Query: 208 YFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDF 234
           YF  SGQGTEL++PK+L LQ KL  GPP D DF
Sbjct: 189 YFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 221

BLAST of MELO3C005958 vs. TrEMBL
Match: A0A0L9VR24_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.1e-73
Identity = 140/180 (77.78%), Postives = 158/180 (87.78%), Query Frame = 1

Query: 54  ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQI 113
           ELPPNALRRK +P WRGGFSLG+DLG +RTGLALSKGFSIRPLTVLELRGQKLE ++I I
Sbjct: 50  ELPPNALRRKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINI 109

Query: 114 AEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAES 173
           AEQEE DEFIIGLPKS DGKETPQSNK+RS+AGR+A +AAERGWRVYL DEHGTT+EA  
Sbjct: 110 AEQEEVDEFIIGLPKSADGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGTTSEAMD 169

Query: 174 HMISKGLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDF 233
            MI+ GL+KS +QKK+DA+AAMMVLERYF  SGQGTEL++PK+L LQ KL  GPP D DF
Sbjct: 170 RMINMGLSKSCQQKKLDAFAAMMVLERYFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 229

BLAST of MELO3C005958 vs. TrEMBL
Match: A0A0S3SXV5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 1.1e-73
Identity = 140/180 (77.78%), Postives = 158/180 (87.78%), Query Frame = 1

Query: 54  ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQI 113
           ELPPNALRRK +P WRGGFSLG+DLG +RTGLALSKGFSIRPLTVLELRGQKLE ++I I
Sbjct: 50  ELPPNALRRKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQKLEVQIINI 109

Query: 114 AEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAES 173
           AEQEE DEFIIGLPKS DGKETPQSNK+RS+AGR+A +AAERGWRVYL DEHGTT+EA  
Sbjct: 110 AEQEEVDEFIIGLPKSADGKETPQSNKVRSVAGRLAVQAAERGWRVYLQDEHGTTSEAMD 169

Query: 174 HMISKGLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDF 233
            MI+ GL+KS +QKK+DA+AAMMVLERYF  SGQGTEL++PK+L LQ KL  GPP D DF
Sbjct: 170 RMINMGLSKSCQQKKLDAFAAMMVLERYFSTSGQGTELVLPKNLELQAKLQRGPPKDVDF 229

BLAST of MELO3C005958 vs. TAIR10
Match: AT1G12244.1 (AT1G12244.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-69
Identity = 123/180 (68.33%), Postives = 152/180 (84.44%), Query Frame = 1

Query: 54  ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQI 113
           E+PPNA+RRK+D +WRGGFSLGVDLG SRTG+A+SKG++++PLTVL+ RGQKLE +L++I
Sbjct: 64  EIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLETRLLEI 123

Query: 114 AEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAES 173
           AE+EEADEFIIGLP+S DGKET QSNKIRS+AGR+A +AAERGWRVY++DEHGTT+EA  
Sbjct: 124 AEEEEADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGTTSEASD 183

Query: 174 HMISKGLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDF 233
            MI  GL+KS RQ + DAYAA+++LERYF   G G E+++PKSL LQ K+  G P DPDF
Sbjct: 184 RMIVMGLSKSERQNRSDAYAAVILLERYFSTQGLGIEIILPKSLELQAKIKNGAPVDPDF 243

BLAST of MELO3C005958 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo])

HSP 1 Score: 477.6 bits (1228), Expect = 1.2e-131
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 1

Query: 1   MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 60
           MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL
Sbjct: 38  MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 97

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD
Sbjct: 98  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 157

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL
Sbjct: 158 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL 217

Query: 181 NKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD 236
           NKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD
Sbjct: 218 NKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD 272

BLAST of MELO3C005958 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus])

HSP 1 Score: 449.1 bits (1154), Expect = 4.7e-123
Identity = 221/235 (94.04%), Postives = 226/235 (96.17%), Query Frame = 1

Query: 1   MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 60
           MFT   GQCFQFQAFQFPLQ+H+LLHSLHPHLPPPS PAL SKSHNNNP SSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLEAKLI+IAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS+GL
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180

Query: 181 NKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDFKD 236
           NKSTRQKKIDAYAAMMVLERYF  SGQGTELLVPKSLVLQDKLIEGPPTDPDF+D
Sbjct: 181 NKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPPTDPDFRD 235

BLAST of MELO3C005958 vs. NCBI nr
Match: gi|778676650|ref|XP_011650631.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 5.0e-101
Identity = 184/196 (93.88%), Postives = 189/196 (96.43%), Query Frame = 1

Query: 1   MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 60
           MFT   GQCFQFQAFQFPLQ+H+LLHSLHPHLPPPS PAL SKSHNNNP SSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLEAKLI+IAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISKGL 180
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS+GL
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISRGL 180

Query: 181 NKSTRQKKIDAYAAMM 197
           NKSTRQKKIDAYAAM+
Sbjct: 181 NKSTRQKKIDAYAAMV 196

BLAST of MELO3C005958 vs. NCBI nr
Match: gi|778676652|ref|XP_011650632.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 3.6e-91
Identity = 167/178 (93.82%), Postives = 171/178 (96.07%), Query Frame = 1

Query: 1   MFTLLCGQCFQFQAFQFPLQSHRLLHSLHPHLPPPSPPALFSKSHNNNPFSSIELPPNAL 60
           MFT   GQCFQFQAFQFPLQ+H+LLHSLHPHLPPPS PAL SKSHNNNP SSIELPPNAL
Sbjct: 1   MFTWSSGQCFQFQAFQFPLQTHKLLHSLHPHLPPPSSPALISKSHNNNPISSIELPPNAL 60

Query: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQIAEQEEAD 120
           RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFS RPLTVLELRGQKLEAKLI+IAEQEEAD
Sbjct: 61  RRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEAKLIEIAEQEEAD 120

Query: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISK 179
           EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMIS+
Sbjct: 121 EFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAESHMISR 178

BLAST of MELO3C005958 vs. NCBI nr
Match: gi|720012470|ref|XP_010259874.1| (PREDICTED: uncharacterized protein LOC104599161 [Nelumbo nucifera])

HSP 1 Score: 285.0 bits (728), Expect = 1.2e-73
Identity = 138/180 (76.67%), Postives = 159/180 (88.33%), Query Frame = 1

Query: 54  ELPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSIRPLTVLELRGQKLEAKLIQI 113
           E+PPNA RRK+DPHWRGGFS+GVDLG SRTG+A+SKGFS RPLTVLELRGQKLE++L++I
Sbjct: 63  EIPPNAFRRKIDPHWRGGFSVGVDLGLSRTGVAVSKGFSARPLTVLELRGQKLESRLLEI 122

Query: 114 AEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTTAEAES 173
           AE+EEADEFIIGLPKS  GKETPQSNK+RS+AGR+A RAAERGWRVYL DEHGT+ EA  
Sbjct: 123 AEREEADEFIIGLPKSRHGKETPQSNKVRSVAGRLAVRAAERGWRVYLQDEHGTSMEALD 182

Query: 174 HMISKGLNKSTRQKKIDAYAAMMVLERYFLMSGQGTELLVPKSLVLQDKLIEGPPTDPDF 233
            MI  G+NKSTRQ +IDA+AAMMVLERYF MSG GTEL++PK L LQ+KL +GPP D DF
Sbjct: 183 FMIDTGINKSTRQGRIDAFAAMMVLERYFSMSGHGTELVLPKQLDLQEKLRKGPPKDEDF 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YQGF_NOCSJ3.3e-1236.50Putative pre-16S rRNA nuclease OS=Nocardioides sp. (strain BAA-499 / JS614) GN=N... [more]
YQGF_ECO574.8e-1132.59Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 GN=yqgF PE=3 SV=1[more]
YQGF_ECO5E4.8e-1132.59Putative pre-16S rRNA nuclease OS=Escherichia coli O157:H7 (strain EC4115 / EHEC... [more]
YQGF_ANADE3.1e-1033.08Putative pre-16S rRNA nuclease OS=Anaeromyxobacter dehalogenans (strain 2CP-C) G... [more]
YQGF_NITWN3.1e-1033.58Putative pre-16S rRNA nuclease OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC... [more]
Match NameE-valueIdentityDescription
A0A0A0L3L5_CUCSA3.3e-12394.04Uncharacterized protein OS=Cucumis sativus GN=Csa_3G116900 PE=3 SV=1[more]
A0A0R0KEA6_SOYBN8.1e-7468.54Uncharacterized protein OS=Glycine max GN=GLYMA_03G033200 PE=3 SV=1[more]
A0A0B2QT40_GLYSO8.1e-7468.54Putative Holliday junction resolvase OS=Glycine soja GN=glysoja_044459 PE=3 SV=1[more]
A0A0L9VR24_PHAAN1.1e-7377.78Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g053800 PE=3 SV=1[more]
A0A0S3SXV5_PHAAN1.1e-7377.78Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G113300 PE=... [more]
Match NameE-valueIdentityDescription
AT1G12244.11.1e-6968.33 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659074761|ref|XP_008437782.1|1.2e-131100.00PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo][more]
gi|449431960|ref|XP_004133768.1|4.7e-12394.04PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus][more]
gi|778676650|ref|XP_011650631.1|5.0e-10193.88PREDICTED: uncharacterized protein LOC101219287 isoform X2 [Cucumis sativus][more]
gi|778676652|ref|XP_011650632.1|3.6e-9193.82PREDICTED: uncharacterized protein LOC101219287 isoform X3 [Cucumis sativus][more]
gi|720012470|ref|XP_010259874.1|1.2e-7376.67PREDICTED: uncharacterized protein LOC104599161 [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
IPR012337RNaseH-like_sf
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006364 rRNA processing
biological_process GO:0031564 transcription antitermination
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005958T1MELO3C005958T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005227Putative pre-16S rRNA nucleaseHAMAPMF_00651Nuclease_YqgFcoord: 71..206
score: 16
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 73..202
score: 1.1
IPR005227Putative pre-16S rRNA nucleaseTIGRFAMsTIGR00250TIGR00250coord: 74..202
score: 1.5
IPR006641YqgF/RNase H-like domainGENE3DG3DSA:3.30.420.140coord: 73..203
score: 3.8
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 71..171
score: 3.6
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 72..202
score: 1.82
NoneNo IPR availablePANTHERPTHR33317FAMILY NOT NAMEDcoord: 54..233
score: 1.5E
NoneNo IPR availablePANTHERPTHR33317:SF2HOLLIDAY JUNCTION RESOLVASE-RELATEDcoord: 54..233
score: 1.5E