WMU56549 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU56549
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr5 : 325769 .. 329411 (+)
Sequence length	545

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TCGGTGGCGACTCTCTTCCACTTCAACAGAAACAAAAACCTTTGTTTGATAGCGATCTTGTTTTCTCCAGAAAACTATTAGGAATTTCCCAACTTTTGACCGAGGGCTCCTCCCCGTTTATTTTTCCTTGCCTGAAGCACATCCTCAATCCTTAAAAGTCTGGGTCTGTAGGTGGTCCCTCAATAAGCTTATCTTGTAAGACTAGACTCTTAGGCACTACAAGCTCGGTTCCCTCGCCTGACATGAAAAAAATATCTCTCTAGTACCATCATGGCAGCATAGGCATCAATCTTCTTCTGCCGAGTAGATTTTATTGAGCCCCCGGTAAGAGGACGAGTGGAGAAGCCTTTACTAAGAGCAAGTCCAGTGCGAGAGGTTCCGAGGTCGACCCCTAGACTGAAAACCTCCTCTCCAGTGAGGGTCGAACTTGCGGCGAAGGGCGTTGGGAGGAAGTTCAATGGAGGAAATTGGGTTGTGGCATTTGCAAATTAGGGTTGGAGATGGAGGCAGAGGAGGAAGGGGATTAGGGAGGAAGGGAGTGGTGG

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

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BLAST of WMU56549 vs. NCBI nr
Match: gi|659074761|ref|XP_008437782.1| (PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 3.8e-08
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = -2


Query: 155 FFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 214
           F MSG+GTEL+VPKSLVLQDKLIEGPPTDPDF
Sbjct: 239 FLMSGQGTELLVPKSLVLQDKLIEGPPTDPDF 270

Query: 215  251
           
Sbjct: 299  270

[Close]

BLAST of WMU56549 vs. NCBI nr
Match: gi|449431960|ref|XP_004133768.1| (PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = -2


Query: 155 FFMSGEGTELVVPKSLVLQDKLIEGPPTDPDF 214
           F  SG+GTEL+VPKSLVLQDKLIEGPPTDPDF
Sbjct: 202 FSTSGQGTELLVPKSLVLQDKLIEGPPTDPDF 233

Query: 215  251
           
Sbjct: 262  233

The following BLAST results are available for this feature:

BLAST of WMU56549 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074761\|ref\|XP_008437782.1\|	3.8e-08	90.63	PREDICTED: uncharacterized protein LOC103483114 [Cucumis melo]	[more]
gi\|449431960\|ref\|XP_004133768.1\|	3.2e-07	87.50	PREDICTED: uncharacterized protein LOC101219287 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla021088	Cla021088	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0133473	S1_0133473	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33317	FAMILY NOT NAMED	coord: 31..74 score: 1.1
None	No IPR available	PANTHER	PTHR33317:SF2	HOLLIDAY JUNCTION RESOLVASE-RELATED	coord: 31..74 score: 1.1