Cla013177 (gene) Watermelon (97103) v1

Overview
NameCla013177
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionDouble-stranded RNA binding protein (AHRD V1 *-*- A9T6E4_PHYPA); contains Interpro domain(s) IPR001159 Double-stranded RNA binding
LocationChr5 : 12131158 .. 12135817 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGAAGAATCCGGTACAGTTGAAGCAGATGCGCCGCAACAATCTTCATTTCCGCCGGACTCAGTTCCGACTGTTGTTCCGTCTCCTATTCCGGTGGAAAACTCCAATACTCCACAGCCTGAAGTAGATATTCATCCTCCATCTGTTTCACCGGACGCAATACTGATTCCGAATGCGGCTTCAGCTCCGGTTCCGTCCCCGAATCCCTCTGATCCCACTCGTAAGTTTATGGCATTGTTGCCTATCATTCTCGTTGAGGATGCGTTTTTGTTGTTGGCGTTTGGTTATCATTGTTTAGTGTTTTTATTTCAGCAAATGCCTGCTACAGTAGATGGATTTCCTCTATATTTGGTGTAATAAGTTCTCTATCTGTTTTTGTTTTCTGTTAGAGAGAGAAGCAATTGCATCCCATTTGTGGGTTAGCGTGTTGAAAAGATTATTCTGTTTTCCTTATGTATCTATGATGAGGTCCTGAGAATTCGATCATAAGTTGCTATTTTTTAATTCCATCTTCTTTCCACAAACTTTGGACGGTAGATTATTTTGCAAGTTAGAATTACTGGTAGGTGTGGGGTGATGATCTAGAGCTTCCTTCTTTGTTCGTTTTTTTTTTTTAAAAAAAAGATTAGGTAGGAAAATTCTCTAGAAGAAACTTTTTACGTAGTTCTAAGCGTTTCATAGTTGAATTATAGCCTATCGTCTTGTCCTCGATCCTTAGTGGTATGTCCTTTGCAAAAAGAATAGTGAGACTTAAATCACCTATTTATTCACTGCCATCTCATAAGGCTGCTTGTCCTATATTCTGCGGTTTTCCCGTGGAGAGATGGAGAAACTAAAGACTAGTCGCTTCAGGCACTGGTGGATTTGACTCATAATGGGGATGTTTTCATTGCAGAGCAGTTTCTTGGCAAACCTTTGGTGGATTTGACTCATAAGTAACCAGAGAAGCCTCGAAGAAGTGGAAGATAATTTGGAGGATTTTTTTCAATTATGCTCATTATATTATTATTTATTTTCTATCTCTCGTGATTTTAATTTCTCTGTGATTAAAGACGTAGGAGCTTTTTCTTATAATTTCTTTTGCTAGGTCTGCATGTTGGTTACGCACTCAGGGCTATGTTTTTGTATGGCCCTTTTTGTCCTTCCATTGCGCTCGATGAATATAATAAAAATGAAAGGAAAAAAAACTAAGTTGTTTACTGAAGTGGAGAGTTTTGCATTGGACTTGTCTGGGTACTTATTAATCCGACATTGCAAATTGGAGAATTTTGAAATTTTCTACAGTCGTACACATGGACTCTTCTAATGCTCCTCCTTTCCCTTTCGGGCTGCAATTTTTTTATGAGTAATAGTGATGCACCCATTTTTATGCATCTCACTCTCATGACATACACAAAAAGAATTAAAATATTTCAAAAAAGATGTAAGAAGAATTTGCCACATGGCAAATTATGAGCATTTTAATCTAGTTGCATAATGAAAAGAAAGGTTCCCCTCAGTTCTTTGTGCAGAAATTTGTTATTTGGTGGATCTTTGTTTTCTTTATAAGAATGAAAGAGATTGATGTTATGGTTTTGCAGAACTCTCCCTGTACAAAAATCATTTGCACGAGTACACTCAAAAGTCAAAGATCCCATTACCAGTATATCAGACTTTTAATGAAGGTTCCCTAGGCATGCCTAAATACAGGTCAACTGTTATGGTTGATGAGGTACATTATGTGTCTCCTTATACGTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCAAGAATTGCCTTTGAGTTCATATCAAAAAAGACAAAGGATGATGGCATTCTTCTCCTTCGTGAGGTATGAGTTATATAGTGAGAGTGAAACTTGATTTCTGGCCTTTAATATTTAGTATGCTTATAACCGTGTTTGTTTATTTATTTAATTTTAAAAAAAAAATTTAGTACAACATATTTTTAGATGCCTTGACCACTATATTATGCTCATGTTGGTCATAATTTTGCTTGTTTAGTTGATTGTAGATGCAACTCTATGATGAGATTTCCTGCCTAGATTTTTGGTTTGTTACAAATAAGATTTTCTGCATGGAAAAAAAATATATATATATATATATATATATTTTTGTAATTTTCTTTCACAATGTGAAAAAACAACTTATTTGAAGCAAACAGAAGCAGTAATTTCCACCTGATATATTTTGTTCTTGTTCTTGGATGAAGAAATCTTAGTAATAGTTGCATGTAATCACAAGTTGTGTAAGATTTCTCATAGTCATAGACAACCTCAAAGGTTGGAATTTATGTAATTGATTTTAGTGACAAGGCATTTGTTTTGTCTTAATAAGAAGTTTGGAAATGATGACCTCAGGAATGTGGTTGTAAGAAACTGGATGCTTTTGTTTGTACTTCTATAGTCCCTTCAGTGATATCCGATAAAATTGAAACGATACAGGAAGATTAGCATGACCCTTACTTCATAGGGATAGGATTCAAATATATGAGAATTAAAGATAGTTTAGTATTTATTATTTATTTTTTAGAAGAATGTAAGCTTTCATTCAGAATTATGAAAGGGCATACAAATAAATAGCCTCAATAGGAACCCAAGAACTACAAGGCCTCAAACCTAATGGATAATTATCAAATACCTTATCCAGCAAGCCCTAACCAAGGTATTATGTAATGTCCTCTCATATTTCTCCCTCTAAAATTCTATTATTTTTTTCAAGCTACATCTCACAAACAACTAAAAAAAAAGTTAGATAAACATAAGGTTCCATCTCAAAACCAATCGACAAGGAGAGGAGTAACCCATAGATCTTATAAAAATCGTGAGGTTTCTTTATCTTGTGACTTGCGATCTCAACAAAACGAGCCACCACATGAAATAACAATGGAATCCCTATTCTATTCTCAAGAAACACCAAATGCCCTGAAAAAGGGGACTCAATTGGTATTTTTTTTATTATTAAATCTAGAACCAAATTCAATTGAGACAAGGATCTTGAAAGAATATTTCCCGATCTCTCCCCATGTTGCTCCTTTCTACCTTTCTCCCTCTCGACCCTTCCTCAACCAACGCAACCATGACAGCTCTCACACCACCACATACAGTCCAATGGAGTCACATCCTCCCAGATCAACAACAATCGAGAGAGAAAAATTTATTATGGAAGTAGATTCTATGTACGGAGGCTCACATCCTAGAATATCTAAAGCTACGAGAGAAATTCTTTAAGAAATTTGGTATTTGTTGTTGCTTTATTTATTTATTTACTTTCTTATGAAGTCAACAACTTTTATTGAGAAGAAATGAAAGAATACAAGGGCATCCAAAAAAAGCCAAACCCACAAAAAGGAGGCTCTCCTAGAGAATTGGGTTCCAGCTATCTAAAATGGTATTCATAGAATAATTACAAAAGATCATAATCAAAGCCTACAAAGAAACATGAAAATCAACGAGAGATAAGACTAGACATCATTAGGGTCCCCCTCTAGCCCTCTAAAAACTTTGTTATTTTCTTTGCCCCAAAGATCCCATAATATAGCACACACCCCAACAAGCCATAAGAACCAACCCTTCTTGATAAAGGACAAATGGAGGAGGAACTCCCTAATTATATCACTAATGTCCTTGTGTCGAGCAAGCGAGATGCCAAATGCATTGAGAAAGAAAAAAGATTGGATGAGATTGCTAAGCTAGCTGCAGAAGGAAAATGGTTGCTCATGGTCGGATAGGAGGTTGTTGAGAGACCAATTTCCATAGGAGTTCGAAATTGTGAACTTAAGAATTCACAATAAACCACTGTTAGCTAGATGGCTTTGGCGTTTCCCCCTTGAGTCCAACACTCTGCCATATATATTAATTATTTTATTAAGTGTGCCGCACTTCATATTTAACAAACTATGTCACTTGTTCTTTTCTCAGGATTTGATGTCATGCAAGTCCATTTTGTCTGAATATACGGACAAAATGAGTTTGAAAAGACCTATATACACAACAAAACACCATAAAGGCTCGGTTCCATTTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATGTTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGAGCTGCTATTCTTTCACTTCATGGTATTTAATTGTTGTAAACAAATACTTCTGAATTATTTCAAAATATTTGGTGCCTTGTCAAAGTTGATTCTTTTTTAAATAATAATAATAATTTTGTAGGAGATGCAAAAAATCCTAAATCACAAAAAACTCTTGCGGAAATCATTGCATCTAAAGTCAGATTCCACGCAACGTTGCAAAAGGTTAAAAATTCACATTTTTCTCAAATTCAACCGGAATCCATGCCTGAAAATACAGTGGAACATGTTGCAATGACAGTTAATGAAGATAAAGAAGTCAAAGATGCTATTTTGGACAATGGAGTGGTATGTGGTGCAATTTCAGAGGTTTGTCCAACAACTTCTCATTTTCGACCTGAATTTAGATCAACAAAACCGGAAGCTTCATCCCTTCCAGTGAGACTCCCAATACAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGTCATCGTACAACTGGGTCTAAAAGGAGATCTAAGAACAAAAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGTAA

mRNA sequence

ATGATGGAAGAATCCGGTACAGTTGAAGCAGATGCGCCGCAACAATCTTCATTTCCGCCGGACTCAGTTCCGACTGTTGTTCCGTCTCCTATTCCGGTGGAAAACTCCAATACTCCACAGCCTGAAGTAGATATTCATCCTCCATCTGTTTCACCGGACGCAATACTGATTCCGAATGCGGCTTCAGCTCCGGTTCCGTCCCCGAATCCCTCTGATCCCACTCAACTCTCCCTGTACAAAAATCATTTGCACGAGTACACTCAAAAGTCAAAGATCCCATTACCAGTATATCAGACTTTTAATGAAGGTTCCCTAGGCATGCCTAAATACAGGTCAACTGTTATGGTTGATGAGGTACATTATGTGTCTCCTTATACGTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCAAGAATTGCCTTTGAGTTCATATCAAAAAAGACAAAGGATGATGGCATTCTTCTCCTTCGTGAGGATTTGATGTCATGCAAGTCCATTTTGTCTGAATATACGGACAAAATGAGTTTGAAAAGACCTATATACACAACAAAACACCATAAAGGCTCGGTTCCATTTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATGTTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGAGCTGCTATTCTTTCACTTCATGGAGATGCAAAAAATCCTAAATCACAAAAAACTCTTGCGGAAATCATTGCATCTAAAGTCAGATTCCACGCAACGTTGCAAAAGGTTAAAAATTCACATTTTTCTCAAATTCAACCGGAATCCATGCCTGAAAATACAGTGGAACATGTTGCAATGACAGTTAATGAAGATAAAGAAGTCAAAGATGCTATTTTGGACAATGGAGTGGTATGTGGTGCAATTTCAGAGGTTTGTCCAACAACTTCTCATTTTCGACCTGAATTTAGATCAACAAAACCGGAAGCTTCATCCCTTCCAGTGAGACTCCCAATACAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGTCATCGTACAACTGGGTCTAAAAGGAGATCTAAGAACAAAAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGTAA

Coding sequence (CDS)

ATGATGGAAGAATCCGGTACAGTTGAAGCAGATGCGCCGCAACAATCTTCATTTCCGCCGGACTCAGTTCCGACTGTTGTTCCGTCTCCTATTCCGGTGGAAAACTCCAATACTCCACAGCCTGAAGTAGATATTCATCCTCCATCTGTTTCACCGGACGCAATACTGATTCCGAATGCGGCTTCAGCTCCGGTTCCGTCCCCGAATCCCTCTGATCCCACTCAACTCTCCCTGTACAAAAATCATTTGCACGAGTACACTCAAAAGTCAAAGATCCCATTACCAGTATATCAGACTTTTAATGAAGGTTCCCTAGGCATGCCTAAATACAGGTCAACTGTTATGGTTGATGAGGTACATTATGTGTCTCCTTATACGTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCAAGAATTGCCTTTGAGTTCATATCAAAAAAGACAAAGGATGATGGCATTCTTCTCCTTCGTGAGGATTTGATGTCATGCAAGTCCATTTTGTCTGAATATACGGACAAAATGAGTTTGAAAAGACCTATATACACAACAAAACACCATAAAGGCTCGGTTCCATTTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATGTTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGAGCTGCTATTCTTTCACTTCATGGAGATGCAAAAAATCCTAAATCACAAAAAACTCTTGCGGAAATCATTGCATCTAAAGTCAGATTCCACGCAACGTTGCAAAAGGTTAAAAATTCACATTTTTCTCAAATTCAACCGGAATCCATGCCTGAAAATACAGTGGAACATGTTGCAATGACAGTTAATGAAGATAAAGAAGTCAAAGATGCTATTTTGGACAATGGAGTGGTATGTGGTGCAATTTCAGAGGTTTGTCCAACAACTTCTCATTTTCGACCTGAATTTAGATCAACAAAACCGGAAGCTTCATCCCTTCCAGTGAGACTCCCAATACAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGTCATCGTACAACTGGGTCTAAAAGGAGATCTAAGAACAAAAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGTAA

Protein sequence

MMEESGTVEADAPQQSSFPPDSVPTVVPSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAASAPVPSPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHYVSPYTFRNRRAAEQDAARIAFEFISKKTKDDGILLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTLAEIIASKVRFHATLQKVKNSHFSQIQPESMPENTVEHVAMTVNEDKEVKDAILDNGVVCGAISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQFVPSTLEEPVGHRTTGSKRRSKNKRKARKKLCMENR
Homology
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BLAST of Cla013177 vs. Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.3e-23
Identity = 73/203 (35.96%), Postives = 114/203 (56.16%), Query Frame = 1 

Query: 54  AILIPNAASAPV---PSPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKY 113
           A+ + + A+A     P+P P  P   + YK+ L EY Q++   LP+Y T  +G     K+
Sbjct: 12  AVAVAHTATAGTDHSPAPLPPPPPHCN-YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKF 71

Query: 114 RSTVMVDEVHYVSPYTFRNRRAAEQDAARIAFEFISKK----TKDDGIL-LLREDLMSCK 173
           +STVMVD   + S +  R  + AEQDAA++A++ + ++    T D  +  L+ +D++  K
Sbjct: 72  KSTVMVDGEEFSSTFCHRRVKDAEQDAAKVAYDTLLERKETETDDTDVFELIDQDVVFSK 131

Query: 174 SILSEYTDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAI 233
           SIL EYT K    +P Y+    +GSV  + S++ F G  YT   +R+KK+AEQ AARAA+
Sbjct: 132 SILHEYTTKTKTDQPEYSVTKTEGSVTPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAV 191

Query: 234 LSLHGDAKNPKSQKTLAEIIASK 249
            SL        +  ++A+I+ SK
Sbjct: 192 KSLLA-----TNYTSMAKIVRSK 208

[Close]
BLAST of Cla013177 vs. Swiss-Prot
Match: DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.3e-22
Identity = 73/222 (32.88%), Postives = 108/222 (48.65%), Query Frame = 1 

Query: 28  PSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAASAPVPSPNPSDPTQLSLYKNHLHEYT 87
           P+P+P E +NT            SP     PN A+A +   N        ++K+ L EY 
Sbjct: 5   PTPLPPETANT------------SP----APNGATAGIRVEN------CYVFKSRLQEYA 64

Query: 88  QKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHYVSPYTFRNRRAAEQDAARIAFEFISK 147
           QK+ +  P Y TF EG    P ++STV+++   Y S   F NR+AAEQ AA +A   I K
Sbjct: 65  QKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVK 124

Query: 148 KTKDDGILLLREDLMSCKSILSEYTDKMSLKRPIY-TTKHHKGSVPFFQSTLVFDGVVYT 207
               +  +   ++   CK++L EY  KM+   P Y  TK   G  PF   T+   G+ Y 
Sbjct: 125 SIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFI-CTVEIGGIQYI 184

Query: 208 SDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTLAEIIASK 249
              +R+KK+AE  AAR A+L++ G ++   +  T   ++  K
Sbjct: 185 GAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203

[Close]
BLAST of Cla013177 vs. Swiss-Prot
Match: DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.3e-22
Identity = 73/222 (32.88%), Postives = 108/222 (48.65%), Query Frame = 1 

Query: 28  PSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAASAPVPSPNPSDPTQLSLYKNHLHEYT 87
           P+P+P E +NT            SP     PN A+A +   N        ++K+ L EY 
Sbjct: 5   PTPLPPETANT------------SP----APNGATAGIRVEN------CYVFKSRLQEYA 64

Query: 88  QKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHYVSPYTFRNRRAAEQDAARIAFEFISK 147
           QK+ +  P Y TF EG    P ++STV+++   Y S   F NR+AAEQ AA +A   I K
Sbjct: 65  QKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVK 124

Query: 148 KTKDDGILLLREDLMSCKSILSEYTDKMSLKRPIY-TTKHHKGSVPFFQSTLVFDGVVYT 207
               +  +   ++   CK++L EY  KM+   P Y  TK   G  PF   T+   G+ Y 
Sbjct: 125 SIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFI-CTVEIGGIQYI 184

Query: 208 SDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTLAEIIASK 249
              +R+KK+AE  AAR A+L++ G ++   +  T   ++  K
Sbjct: 185 GAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203

[Close]
BLAST of Cla013177 vs. Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.1e-21
Identity = 71/226 (31.42%), Postives = 108/226 (47.79%), Query Frame = 1 

Query: 78  LYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHYVSPYTFRNRRAAEQDA 137
           ++K+ L EY QK K+P PVY+   EG      ++STV++D V Y S   F NR+AAEQ A
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 138 ARIAFEFISKKTK-DDGILLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHK--GSVPFF 197
           A +A   ++K ++    +     +   CK++L EY  KM+   P+Y  +  +  G V  F
Sbjct: 75  AEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query: 198 QSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDAKN------------PKSQKTLA 257
             T+   G+ YT   +R+KK+AE  A R A+L++  D KN            P  +KT+ 
Sbjct: 135 TCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKNNLANYNTQLTVLPCEKKTIQ 194

Query: 258 EII----------ASKVRFHATLQKVKNSHFSQIQPESMPENTVEH 279
             I          A K +F    QK K +     +   +P    +H
Sbjct: 195 AAIPLKETVKTLKARKAQFKKKAQKGKRTVAKNPEDIIIPPQPTDH 240

[Close]
BLAST of Cla013177 vs. Swiss-Prot
Match: DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.1e-20
Identity = 71/222 (31.98%), Postives = 106/222 (47.75%), Query Frame = 1 

Query: 28  PSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAASAPVPSPNPSDPTQLSLYKNHLHEYT 87
           P+P+P E +NT            SP     P  A+A +   N        ++K+ L EY 
Sbjct: 7   PTPLPPETANT------------SP----APIGATAGIRVEN------CYVFKSRLQEYA 66

Query: 88  QKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHYVSPYTFRNRRAAEQDAARIAFEFISK 147
           QK+ +  P Y T  EG    P ++STV+++   Y S   F NR+AAEQ AA +A   I K
Sbjct: 67  QKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVK 126

Query: 148 KTKDDGILLLREDLMSCKSILSEYTDKMSLKRPIY-TTKHHKGSVPFFQSTLVFDGVVYT 207
               +  +   ++   CK++L EY  KM+   P Y  TK   G  PF   T+   G+ Y 
Sbjct: 127 SIPANANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFL-CTVEIGGIQYI 186

Query: 208 SDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTLAEIIASK 249
              +R+KK+AE  AAR A+L++ G ++   +  T   ++  K
Sbjct: 187 GAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 205

[Close]
BLAST of Cla013177 vs. TrEMBL
Match: A0A0A0LCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.2e-87
Identity = 170/214 (79.44%), Postives = 189/214 (88.32%), Query Frame = 1 

Query: 158 REDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAE 217
           + DLM CKSILSEYTDKM L+RPIYTTKH++GSV FFQSTLVFDGVVYTSD+ R+KKEAE
Sbjct: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156

Query: 218 QLAARAAILSLHGDAKNPKSQKTLAEIIASKVRFHATLQKVKNSHFSQIQPESMPENTVE 277
           QLAARAAILSLH DA NPKSQK L +IIASKVRFHA LQKVK+S+FSQ QP+SMPENTVE
Sbjct: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216

Query: 278 HVAMTVNEDKEVKDAILDNGVVCGAISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQFVP 337
            VAMTVNE KE+KDA+LD G+VCGAISE CP TS F+PEF +TKP+ SS  +RLPI+FV 
Sbjct: 217 RVAMTVNEGKELKDAVLDGGMVCGAISEACP-TSQFQPEFSATKPDGSSPLMRLPIEFVR 276

Query: 338 STLEEPVG-HRTTGSKRRSKNKRKARKKLCMENR 371
           STLEEPVG H T GSKR+SKNKRKARKKLCMENR
Sbjct: 277 STLEEPVGYHATIGSKRKSKNKRKARKKLCMENR 309

[Close]
BLAST of Cla013177 vs. TrEMBL
Match: A0A0A0LAZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.4e-64
Identity = 125/158 (79.11%), Postives = 137/158 (86.71%), Query Frame = 1 

Query: 2   MEESGTVEADAPQQSSFPPDSVPTVVPSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAA 61
           MEESGTVEA APQQS FP DSVPTVV  PIPVENSNT QP+ DIHPPSV PD + IP+AA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVPSPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHY 121
            AP+PSPN SD TQ+ +YKNHLHEYTQK+KI +PVYQT +EGS  +PKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPYTFRNRRAAEQDAARIAFEFISKKTKDDGILLLRE 160
           VSP TFRNRRAAEQDAAR+AFE+ISKKTKDD  LLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]
BLAST of Cla013177 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 6.6e-62
Identity = 149/313 (47.60%), Postives = 191/313 (61.02%), Query Frame = 1 

Query: 60  AASAPVPSPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEV 119
           AA    P+P+ +   +  ++KN L EYTQ+S IPLP+YQT NEG    PK+RSTV+VD  
Sbjct: 4   AAKVDCPAPSSTRLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGA 63

Query: 120 HYVSPYTFRNRRAAEQDAARIAFEFISKKTKDDGILLLREDLMSCKSILSEYTDKMSLKR 179
            Y SP TF +R+AAEQD AR+A EFISKK KD+G  L+RED + CKSIL+E+  KM+L++
Sbjct: 64  TYTSPNTFSHRKAAEQDVARLALEFISKKIKDEGCPLIREDTVFCKSILNEFAVKMNLEK 123

Query: 180 PIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDAKNPKSQK 239
           P YTT   +G +P F S+LVF+GV YT D  R+KKEAEQLAAR  ILS+ G   N  S  
Sbjct: 124 PTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSILG---NSGSGT 183

Query: 240 TLAEIIASKVRFHATLQKVKNSHFSQIQPESMPENTVEHVAMTVNEDKEV---KDAILDN 299
            L+EII SKV+ +A L +VK+   S I    +P      +     ++ EV    D +L  
Sbjct: 184 LLSEIIKSKVKLYAALHRVKDP--SYIHTGILPIGLTSGIPPCKGKEVEVAPGTDQLLPT 243

Query: 300 GV---VCGAISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQFVPSTLEEP-VGHRTTGSK 359
            V   + G +  V P T     E    KP  SS  +  PI FVPS  E+P V   TTG K
Sbjct: 244 AVSVPLSGQLVHV-PVTHPPVHELEKPKPNVSSEVIAPPISFVPSVFEQPLVVSPTTGRK 303

Query: 360 RRSKNKRKARKKL 366
           R  KNK+KA KKL
Sbjct: 304 RNRKNKKKANKKL 310

[Close]
BLAST of Cla013177 vs. TrEMBL
Match: A0A061EHS9_THECC (DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TCM_019209 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.2e-56
Identity = 129/296 (43.58%), Postives = 183/296 (61.82%), Query Frame = 1 

Query: 67  SPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHYVSPYT 126
           +PNPS   +  ++KN L EYTQ+S IPLPVYQT NEGSL  P++RSTV+VD   Y S  T
Sbjct: 19  APNPSRAPEPLMHKNRLQEYTQRSSIPLPVYQTTNEGSLHAPRFRSTVLVDGTSYTSLDT 78

Query: 127 FRNRRAAEQDAARIAFEFISKKTKDDGILLLREDLMSCKSILSEYTDKMSLKRPIYTTKH 186
           F +R+AAEQDAA++A + I+KK KD+G  ++RED + CKSIL+E+  KM+++ P Y T  
Sbjct: 79  FSHRKAAEQDAAKVALDCITKKIKDEGCPIIREDTVFCKSILNEFAVKMNMEMPSYNTIQ 138

Query: 187 HKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTLAEIIA 246
            +G +P F S+LVF+ V Y+    R+KKEAEQLAARAA+LSL  D+   +    L+EII 
Sbjct: 139 SEGLIPLFVSSLVFNDVTYSGKTGRNKKEAEQLAARAALLSLLDDS---RYGTFLSEIIK 198

Query: 247 SKVRFHATLQKVKNSHFSQIQPESMPENTVEHVAMTVNEDKEVKDAILDNGVVCGAISEV 306
           SK + +  L KVK+S  S I       NT      ++++++E++ A++ N V    I   
Sbjct: 199 SKAKLYVALNKVKDSSISHIGTTPAGANT------SIHKNEEIETAVVTNSVPNTVILPS 258

Query: 307 CPTTSHFRPEFRSTKPEASSLPVRLPIQFVPSTLEE--PVGHRTTGSKRRSKNKRK 361
                     F+  K E  S  + LPI FVP+ + E  PVG  ++  +RR K + K
Sbjct: 259 SSGAKRPHHVFKIEKLEEGSEHIDLPIVFVPTAVAESLPVGESSSRKRRRKKKRAK 305

[Close]
BLAST of Cla013177 vs. TrEMBL
Match: A0A067KA91_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 8.6e-54
Identity = 129/288 (44.79%), Postives = 174/288 (60.42%), Query Frame = 1 

Query: 30  PIPVENSNTPQPEVDIHPPSVSPDAILI----PNAASAPVPSPNPSDPTQLSLYKNHLHE 89
           P P  +SN          P+ +  ++ +    P  A++ V +  PS P QL ++KN L E
Sbjct: 4   PKPYYDSNRNHAASQYQNPNQASASVPLLAQAPAPATSTVAASTPSSPHQL-MHKNRLQE 63

Query: 90  YTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHYVSPYTFRNRRAAEQDAARIAFEFI 149
           YTQKS + LP+YQT NEG    P++RSTV+VD   Y SP TF +R+ AEQDAAR+A E I
Sbjct: 64  YTQKSSLQLPIYQTVNEGHQHAPRFRSTVIVDGEQYTSPNTFAHRKGAEQDAARVAMECI 123

Query: 150 SKKTKDDGILLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVY 209
            KKTKD+G  L+ ED + CKSIL EY  KM +++P+Y T   +G  P F STLVF+GV Y
Sbjct: 124 LKKTKDEGCPLIYEDKVFCKSILYEYAVKMQIEKPMYNTFQPQGLFPIFGSTLVFNGVTY 183

Query: 210 TSDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTLAEIIASKVRFHATLQKVKNSHFSQ 269
           T D  R+KKEAEQLAAR+AILSL G   NP S   ++EII SK + +A+L K K S    
Sbjct: 184 TGDTGRTKKEAEQLAARSAILSLMG---NPVSSAIISEIIKSKSKLYASLYKFKESQL-D 243

Query: 270 IQPESMPENTVEH-VAMTVNEDKEVKDAILDNGVVCGAISEVCPTTSH 313
            Q +S  +   +H +   VN++KE +  ++ N V   AI +      H
Sbjct: 244 AQLDSQSQLDAQHGIVPAVNKNKEAEVVLVGNNVPLRAIPQPTSPQPH 286

[Close]
BLAST of Cla013177 vs. NCBI nr
Match: gi|659114468|ref|XP_008457066.1| (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 582.0 bits (1499), Expect = 7.2e-163
Identity = 298/369 (80.76%), Postives = 326/369 (88.35%), Query Frame = 1 

Query: 2   MEESGTVEADAPQQSSFPPDSVPTVVPSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAA 61
           ME SGTVEA APQQS F  DSVPTVV  PIPV+N +T Q + +IHPPSV PD +LIP+AA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 62  SAPVPSPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHY 121
            AP+PSPN SDPTQ+ +YKNHLHEY QK++I +PVYQT +EGS G+PK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 122 VSPYTFRNRRAAEQDAARIAFEFISKKTKDDGILLLREDLMSCKSILSEYTDKMSLKRPI 181
           VSP TFRNRRAAEQDAARIAFE+ISKKTKDD  LLLREDL+ CKSILSEYTDKM L+RPI
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLREDLILCKSILSEYTDKMGLERPI 180

Query: 182 YTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTL 241
           YTTKHHKGSVP FQSTLVFDGVVYTSD+SR+KKEAEQLAARAAILSLH DA N KSQKTL
Sbjct: 181 YTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAINIKSQKTL 240

Query: 242 AEIIASKVRFHATLQKVKNSHFSQIQPESMPENTVEHVAMTVNEDKEVKDAILDNGVVCG 301
           A+IIASKVRFHA LQKVK+SHFSQIQP+SMPENTVE VAMTVNEDK VKDA+ D+GVVCG
Sbjct: 241 ADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVSDSGVVCG 300

Query: 302 AISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQFVPSTLEEPVG-HRTTGSKRRSKNKRK 361
           AISE CP TS FRPEF STKPE SS  VRLPI+FVPSTLE PVG H TTGSKRRSKNKRK
Sbjct: 301 AISEACP-TSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRRSKNKRK 360

Query: 362 ARKKLCMEN 370
           ARKKLCMEN
Sbjct: 361 ARKKLCMEN 368

[Close]
BLAST of Cla013177 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 580.5 bits (1495), Expect = 2.1e-162
Identity = 295/370 (79.73%), Postives = 325/370 (87.84%), Query Frame = 1 

Query: 2   MEESGTVEADAPQQSSFPPDSVPTVVPSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAA 61
           MEESGTVEA APQQS FP DSVPTVV  PIPVENSNT QP+ DIHPPSV PD + IP+AA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVPSPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHY 121
            AP+PSPN SD TQ+ +YKNHLHEYTQK+KI +PVYQT +EGS  +PKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPYTFRNRRAAEQDAARIAFEFISKKTKDDGILLLREDLMSCKSILSEYTDKMSLKRPI 181
           VSP TFRNRRAAEQDAAR+AFE+ISKKTKDD  LLLREDLM CKSILSEYTDKM L+RPI
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180

Query: 182 YTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTL 241
           YTTKH++GSV FFQSTLVFDGVVYTSD+ R+KKEAEQLAARAAILSLH DA NPKSQK L
Sbjct: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 240

Query: 242 AEIIASKVRFHATLQKVKNSHFSQIQPESMPENTVEHVAMTVNEDKEVKDAILDNGVVCG 301
            +IIASKVRFHA LQKVK+S+FSQ QP+SMPENTVE VAMTVNE KE+KDA+LD G+VCG
Sbjct: 241 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 300

Query: 302 AISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQFVPSTLEEPVG-HRTTGSKRRSKNKRK 361
           AISE CP TS F+PEF +TKP+ SS  +RLPI+FV STLEEPVG H T GSKR+SKNKRK
Sbjct: 301 AISEACP-TSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRK 360

Query: 362 ARKKLCMENR 371
           ARKKLCMENR
Sbjct: 361 ARKKLCMENR 369

[Close]
BLAST of Cla013177 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 578.2 bits (1489), Expect = 1.0e-161
Identity = 298/369 (80.76%), Postives = 326/369 (88.35%), Query Frame = 1 

Query: 2   MEESGTVEADAPQQSSFPPDSVPTVVPSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAA 61
           ME SGTVEA APQQS F  DSVPTVV  PIPV+N +T Q + +IHPPSV PD +LIP+AA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 62  SAPVPSPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHY 121
            AP+PSPN SDPTQ+ +YKNHLHEY QK++I +PVYQT +EGS G+PK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 122 VSPYTFRNRRAAEQDAARIAFEFISKKTKDDGILLLREDLMSCKSILSEYTDKMSLKRPI 181
           VSP TFRNRRAAEQDAARIAFE+ISKKTKDD  LLLREDL+ CKSILSEYTDKM L+RPI
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLREDLILCKSILSEYTDKMGLERPI 180

Query: 182 YTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTL 241
           YTTKHHKGSVP FQSTLVFDGVVYTSD+SR+KKEAEQLAARAAILSLH DA N KSQKTL
Sbjct: 181 YTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLH-DAINIKSQKTL 240

Query: 242 AEIIASKVRFHATLQKVKNSHFSQIQPESMPENTVEHVAMTVNEDKEVKDAILDNGVVCG 301
           A+IIASKVRFHA LQKVK+SHFSQIQP+SMPENTVE VAMTVNEDK VKDA+ D+GVVCG
Sbjct: 241 ADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVSDSGVVCG 300

Query: 302 AISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQFVPSTLEEPVG-HRTTGSKRRSKNKRK 361
           AISE CP TS FRPEF STKPE SS  VRLPI+FVPSTLE PVG H TTGSKRRSKNKRK
Sbjct: 301 AISEACP-TSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRRSKNKRK 360

Query: 362 ARKKLCMEN 370
           ARKKLCMEN
Sbjct: 361 ARKKLCMEN 367

[Close]
BLAST of Cla013177 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 576.6 bits (1485), Expect = 3.0e-161
Identity = 295/370 (79.73%), Postives = 325/370 (87.84%), Query Frame = 1 

Query: 2   MEESGTVEADAPQQSSFPPDSVPTVVPSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAA 61
           MEESGTVEA APQQS FP DSVPTVV  PIPVENSNT QP+ DIHPPSV PD + IP+AA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVPSPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHY 121
            AP+PSPN SD TQ+ +YKNHLHEYTQK+KI +PVYQT +EGS  +PKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPYTFRNRRAAEQDAARIAFEFISKKTKDDGILLLREDLMSCKSILSEYTDKMSLKRPI 181
           VSP TFRNRRAAEQDAAR+AFE+ISKKTKDD  LLLREDLM CKSILSEYTDKM L+RPI
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180

Query: 182 YTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLHGDAKNPKSQKTL 241
           YTTKH++GSV FFQSTLVFDGVVYTSD+ R+KKEAEQLAARAAILSLH DA NPKSQK L
Sbjct: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH-DATNPKSQKAL 240

Query: 242 AEIIASKVRFHATLQKVKNSHFSQIQPESMPENTVEHVAMTVNEDKEVKDAILDNGVVCG 301
            +IIASKVRFHA LQKVK+S+FSQ QP+SMPENTVE VAMTVNE KE+KDA+LD G+VCG
Sbjct: 241 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 300

Query: 302 AISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQFVPSTLEEPVG-HRTTGSKRRSKNKRK 361
           AISE CP TS F+PEF +TKP+ SS  +RLPI+FV STLEEPVG H T GSKR+SKNKRK
Sbjct: 301 AISEACP-TSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRK 360

Query: 362 ARKKLCMENR 371
           ARKKLCMENR
Sbjct: 361 ARKKLCMENR 368

[Close]
BLAST of Cla013177 vs. NCBI nr
Match: gi|778680848|ref|XP_011651406.1| (PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus])

HSP 1 Score: 373.2 bits (957), Expect = 5.1e-100
Identity = 186/228 (81.58%), Postives = 203/228 (89.04%), Query Frame = 1 

Query: 2   MEESGTVEADAPQQSSFPPDSVPTVVPSPIPVENSNTPQPEVDIHPPSVSPDAILIPNAA 61
           MEESGTVEA APQQS FP DSVPTVV  PIPVENSNT QP+ DIHPPSV PD + IP+AA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVPSPNPSDPTQLSLYKNHLHEYTQKSKIPLPVYQTFNEGSLGMPKYRSTVMVDEVHY 121
            AP+PSPN SD TQ+ +YKNHLHEYTQK+KI +PVYQT +EGS  +PKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPYTFRNRRAAEQDAARIAFEFISKKTKDDGILLLREDLMSCKSILSEYTDKMSLKRPI 181
           VSP TFRNRRAAEQDAAR+AFE+ISKKTKDD  LLLREDLM CKSILSEYTDKM L+RPI
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180

Query: 182 YTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLH 230
           YTTKH++GSV FFQSTLVFDGVVYTSD+ R+KKEAEQLAARAAILSLH
Sbjct: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH 228

The following BLAST results are available for this feature:
BLAST of Cla013177 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DRB4_ORYSJ2.3e-2335.96Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE... [more]
DRB7_ORYSJ4.3e-2232.88Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE... [more]
DRB8_ORYSJ4.3e-2232.88Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE... [more]
DRB1_ARATH8.1e-2131.42Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1[more]
DRB3_ORYSJ3.1e-2031.98Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE... [more]
BLAST of Cla013177 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCN7_CUCSA1.2e-8779.44Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1[more]
A0A0A0LAZ4_CUCSA2.4e-6479.11Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1[more]
D7TSR3_VITVI6.6e-6247.60Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=... [more]
A0A061EHS9_THECC9.2e-5643.58DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TC... [more]
A0A067KA91_JATCU8.6e-5444.79Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1[more]
BLAST of Cla013177 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114468|ref|XP_008457066.1|7.2e-16380.76PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo][more]
gi|449464150|ref|XP_004149792.1|2.1e-16279.73PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus][more]
gi|659114470|ref|XP_008457067.1|1.0e-16180.76PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo][more]
gi|778680845|ref|XP_011651405.1|3.0e-16179.73PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus][more]
gi|778680848|ref|XP_011651406.1|5.1e-10081.58PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0018342 protein prenylation
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0035194 posttranscriptional gene silencing by RNA
biological_process GO:0070918 production of small RNA involved in gene silencing by RNA
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0016075 rRNA catabolic process
biological_process GO:0031053 primary miRNA processing
biological_process GO:0031054 pre-miRNA processing
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0008318 protein prenyltransferase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0004525 ribonuclease III activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU49591watermelon EST collection version 2.0transcribed_cluster
WMU59888watermelon EST collection version 2.0transcribed_cluster
WMU66630watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013177Cla013177.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU66630WMU66630transcribed_cluster
WMU49591WMU49591transcribed_cluster
WMU59888WMU59888transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 79..145
score: 4.6E-15coord: 162..234
score: 3.1
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 79..143
score: 3.3E-7coord: 165..227
score: 1.6
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 164..229
score: 2.8E-7coord: 79..146
score: 4.6
IPR014720Double-stranded RNA-binding domainPROFILEPS50137DS_RBDcoord: 78..147
score: 9.708coord: 163..230
score: 9
NoneNo IPR availablePANTHERPTHR11207RIBONUCLEASE IIIcoord: 3..296
score: 5.5
NoneNo IPR availablePANTHERPTHR11207:SF8SUBFAMILY NOT NAMEDcoord: 3..296
score: 5.5
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 74..145
score: 9.74E-17coord: 160..228
score: 7.86