WMU66630 (transcribed_cluster) Watermelon (97103) v1

NameWMU66630
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr5 : 12130044 .. 12131545 (-)
Sequence length487
The following sequences are available for this feature:

transcribed_cluster sequence

GAAATCATTGCATCTAAAGTCAGATTCCACGCAACGTTGCAAAAGTTAATGAAGATAAAGAAGTCAAAGATGCTATTTTGGACAATGGAGTGGTATGTGGTGCAATTTCAGAGGTTTGTCCAACAACTTCTCATTTTCGACCTGAATTTAGATCAACAAAACCGGAAGCTTCATCCCTTCCAGTGAGACTCCCAATACAATTTGTGCCTTCAAACTTTTAGAGGAGCCTGTTGGTCATCGTACAACTGGGTCTAAAAGGAGATCTAAGAACAAAAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGGCGGGGGTGAAGACAAGTCAAACTGCTCCTTGCTCCGTAGCTCAATGACTGTGAAGTGACCTGTAGTATAAGGGAGTCTGAAAATAATCACGTTCGCTTTTTGGTTGGTGAACGATTTTGGCATTAAAAGCGAGAGTGCAATGATAGCTCTGTTGAAAGGTTATAACGACTTGAACT
BLAST of WMU66630 vs. NCBI nr
Match: gi|659114468|ref|XP_008457066.1| (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 3

Query: 24  IPRNVAKVNEDKEVKDAILDNGVVCGAISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQF 83
           + R    VNEDK VKDA+ D+GVVCGAISE CP TS FRPEF STKPE SS  VRLPI+F
Sbjct: 275 VERVAMTVNEDKNVKDAVSDSGVVCGAISEACP-TSLFRPEFSSTKPEGSSPLVRLPIEF 334

Query: 84  VPS 143
           VPS
Sbjct: 335 VPS 336

Query: 144 203
           
Sbjct: 395 336

Query: 204 213
           
Sbjct: 455 336

BLAST of WMU66630 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 45/63 (71.43%), Postives = 49/63 (77.78%), Query Frame = 3

Query: 24  IPRNVAKVNEDKEVKDAILDNGVVCGAISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQF 83
           + R    VNEDK VKDA+ D+GVVCGAISE CP TS FRPEF STKPE SS  VRLPI+F
Sbjct: 274 VERVAMTVNEDKNVKDAVSDSGVVCGAISEACP-TSLFRPEFSSTKPEGSSPLVRLPIEF 333

Query: 84  VPS 143
           VPS
Sbjct: 334 VPS 335

Query: 144 203
           
Sbjct: 394 335

Query: 204 213
           
Sbjct: 454 335

BLAST of WMU66630 vs. NCBI nr
Match: gi|659114472|ref|XP_008457068.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo])

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 44/56 (78.57%), Postives = 47/56 (83.93%), Query Frame = 3

Query: 45  VNEDKEVKDAILDNGVVCGAISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQFVPS 104
           VNEDK VKDA+ D+GVVCGAISE CP TS FRPEF STKPE SS  VRLPI+FVPS
Sbjct: 229 VNEDKNVKDAVSDSGVVCGAISEACP-TSLFRPEFSSTKPEGSSPLVRLPIEFVPS 283

Query: 105 164
           
Sbjct: 289 283

Query: 165 213
           
Sbjct: 349 283

BLAST of WMU66630 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 3

Query: 24  IPRNVAKVNEDKEVKDAILDNGVVCGAISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQF 83
           + R    VNE KE+KDA+LD G+VCGAISE CP TS F+PEF +TKP+ SS  +RLPI+F
Sbjct: 274 VERVAMTVNEGKELKDAVLDGGMVCGAISEACP-TSQFQPEFSATKPDGSSPLMRLPIEF 333

Query: 84  VPSNF*RSLLVIVQLGLKGDLRTKER 143
           V S     +     +G K   + K +
Sbjct: 334 VRSTLEEPVGYHATIGSKRKSKNKRK 358

Query: 144 203
           
Sbjct: 394 358

Query: 204 263
           
Sbjct: 454 358

Query: 264 282
           
Sbjct: 514 358

BLAST of WMU66630 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 3

Query: 24  IPRNVAKVNEDKEVKDAILDNGVVCGAISEVCPTTSHFRPEFRSTKPEASSLPVRLPIQF 83
           + R    VNE KE+KDA+LD G+VCGAISE CP TS F+PEF +TKP+ SS  +RLPI+F
Sbjct: 275 VERVAMTVNEGKELKDAVLDGGMVCGAISEACP-TSQFQPEFSATKPDGSSPLMRLPIEF 334

Query: 84  VPSNF*RSLLVIVQLGLKGDLRTKER 143
           V S     +     +G K   + K +
Sbjct: 335 VRSTLEEPVGYHATIGSKRKSKNKRK 359

Query: 144 203
           
Sbjct: 395 359

Query: 204 263
           
Sbjct: 455 359

Query: 264 282
           
Sbjct: 515 359

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659114468|ref|XP_008457066.1|1.4e-1471.43PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo][more]
gi|659114470|ref|XP_008457067.1|1.4e-1471.43PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo][more]
gi|659114472|ref|XP_008457068.1|3.2e-1478.57PREDICTED: double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo][more]
gi|778680845|ref|XP_011651405.1|1.3e-1248.84PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus][more]
gi|449464150|ref|XP_004149792.1|1.3e-1248.84PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla013177Cla013177gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0149533S2_0149533EST