Cucsa.012600 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.012600
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Double-stranded RNA binding protein, putative
Location	scaffold00164 : 236611 .. 248736 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCTCCAATTCCATTACCCTCGATAATAATCGACGATTATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCGTAAGTGTATGACAATGTTGCCCATCGTTCCGTTGAGGATGCATTTTTTGTTCTTGGTGTTTGGTTATAATTGTTTAGTGTTTTCGTTTCAGCAAATATCTGCCATATTAGATGGATTTCCTCTACATTTCGTGTACTTAAGTTCCCCATCTGTTTTTGTTTTCTGTTAGAGAGAGAAGCAATTGCGAGCCATTTGTGTGTGTTGAAAGAATTATCTTGTTCTCCGTATGTGTCTATGAGGTCCTGAGAATTCAATTATAAGTTGCTATTTCTTACTTCCGTTTCCATCTTCTTTCCACAAATTTTGGATGGTCGGTTGTTTTGGAAGTTAGAATACTGGTAGTTCTGTGGCGATGATCTAGATATTCCTTCCTTGTTCGGTTTTTAAAACAAAAATAATTTGGAGAATTCTCTTGAAGAAAATTTCTACGGGGTTTACTTCTAGCCTATCTTCTTAACCACAATGAGTTGGCTTGGTGGTAAAAAAGGAGTATGAGTATATCTAGAGCTCGTGGGTTCAAACCTACCTAGAAATTAATTTACTACGAGTTGGACGGATTGTTTAGTAGATTAGTTTGCCCACACTCACATATATAAAAAAAACTCTAGCCTATCATCTTGCCCTCGATCCTTAGTGGCATGTTCTTCGCAAGAATAGTGAGACTATTTATTCACCTTCACCTCATAAGGCTGCTTTTCCTACATTCTGCTGTGTGCCTTTTGGAAGATGGAGAAACTAAAGATTAGACGCTTCAGGCATTGGTGGATTTGACTCATAATGAGGATGCTATCTTTGCAGACCAGTTTCTGGACAATTCTTTGGTGGATTTGATGTTATTTCTTTTTTATCTCGTGAGTTTTCTTTCTCTATGATTAAAGATGTAGGATCCTTTTCTGATAGTTTCTTTTGCCAGGTTTGCATGTTGGTTAGGCACTCAAGGCTATGTTTTTGTATGGTCTTTTTGTTCTTCCATTTCCCTCAATGACCATAACAGAAATGAAAGGAAAAAAGAATAAATTGTTAACTGAAGAGGACGGTTATGCATTGGGTACTTATAATCTGACATTGCAAATTGAGGAACTTGTAATTTTCTACAGTCGTTCGTACACGTGGACTCTTCTAATGTTCCTCCTTTCACTTTTGGGCTTCAATTTGTTTATGAGTATTATTCAATGCATCCATCTTTATGCATCACACGAATAGAGAGAATTAAAATATTTCAAAAACGATGTTAGAAGAATTTGGTGGGGTGTACATAGATACCTGTTTTCCCAGATGCACATGAGTATTTTTTTTATTCATATTTTATTCTAGTTGTGTAATACAAGACAAAGGTCCCCTCAGTTTTATTGTGCACGAATTTGTTATTTGGTGGATTTTTGTTCTTTATAAGAATGGAAGAGAAATCAATGTTATGGTTTTGCAGAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGATATTGAAACTTGATTTGTTGCCTTTAATTTTTAGTATGCGTATAACTGTACTTGATTATTTATTTATTTCATTTTTTAAAATTCTAGTACAACATATGTGGTGGAAACTGTAGATTTAAATTTTCTGACCTTAATGGAAGGAATAGATGCCTTCACCACTATATTATGCTCACGTGGTCATAATTTTGCTTGCTTAGTTGATTTTAAACGCAATTCTACGATGAGATTTCCTATATGGATTTGTGGTTTGTTACAAATAAGATTTTCTGCATGGAAAATACTTTTGTTGTAATTTTCTTTCATAATGTGTATAATAACGTATTTGAAGCAAACAGAAGCATTGATAGTTGCATTGCATTTAATCACTTAAGTTGGGTAAGATTTCTCATAGTCGTAGTCATAGTCAAAGACCTCAAAAGTTGGAATTTATGTAATTGATTTTAGTGATAAGGCATTCAGTTTGCCTGAATTAGAAGTTTGGAAATTATGCCCTCGGGAATTTGGTCGTTAGAAACTGAATGCTTTTGTTTGTACTTCATGGTGAATAGGGATAGGATTCAAATGTATAAGAATGAAAGATAGTTTAGTTTTATTTATGTTATAAGAAACATGTGAGCTTTCATTGAGAATTATGATAGAGCATACAAATAAATAGCCTCAACAGGAAGGCAAGAACTACAAGGTTTCAAATCCAAAAGAATAAGGCCCTAACCAAGGTATCATGTAATGTCCTCCCACAACTCCTCGGCGTAGCACTCCCTCTTAAAGTTCTATTATTTCTTTCAAGCTACATATCACAAACAATTGAAAAAGGAAAATAAAAATGAAAAACGTACTAGATAAACATGAGATTCCATCTCAAAACCAACCAACAACAAGAGGAGTAACTCCCTCCATAGCGCCAAGGATCTTAAAAGAATATTTCTTAATCTCTCTCGATGTTGCTCCTTCCTACCCTTTCTCCTTGTCTTACTAGACCCTTTCTCTACCAACACAACCATGAGACCTCTCTGATCACCACATATGACGATGCGTACTCACAGCCCCAGATAATTGAGAGAAAAGTTTATTATGGCAGTAGATTTTATGTATAGAGGCTCACATATTTTTTTAAGAGGAAACAAGTTCCGTTTATTAATAAATTAATAATATAGAGACAGAAGCTCATAGTACAAGAGGATTACAATGAGTGAAAAGAGAGAGAGATCAATTGACGCACCCCGACATCTCAAGTAGGCAGTTTTTTTGACAGAGGTTGACATGTTAAAATACCTAAAGCTACAAGAAAAATTCTTTTAGAAATTTACTGTGGGTTATTATTGTATTTATTTATTTACTTTCTTATGAAATGAACAACTTTTATTGAGAATAAATGAAAGAATACGAGGACATAAAAAGATAAAAAACCAAACTCACAAAAAGGAAACTCACCTAGAGAAATTGGCTTAAGTTATCTGAAATGGTACTTATAGAATAATTATAAAAGATCCTCAAAATTGGAGCAAATACAGAAACATGAAAAGTACCAAGAGAACAAACATCATTAGACGTCCCTCTCCAATCCTGAAAAAGCTTTGTTATTTTGTTTGCCCGAGAGATCCCATAATATAGTGCACACTGCAAAAAAACCATGAGAACCAACTTTTCTTCCAAAGGACGAATGGTAGAGGAACTTCTTAACTATATCACTGGTGTCTGTGTCGAGCAAGTGAGAGACCAAATGCTGGGAGAAAAACGAAGAGTCAATGAGATTGCTAAGCTAGCATGAAGAAGGAAAATGGTTGTTATGGTTCGATAAGAAGTGGAGAGACCAGTTTCCCTGAGAGGGTTAGACGTTAGTAATGTAAGAATTCACAATAAAGTTTTGTTGGTCAAATGGCTTTGATGTTTTCCCTTGAGTCCAACTCTCTACAATATATATTAATTATAGATGGGTTTATGTGGAAGAAGTCTTTGTTAATGGGGTCATTTTGTTGTATTATTTGTCGAAAGGCGGTGAAAGACCCGAATCACATTCTTTAGAGTTGTCAATGTGGAATTGCTTCTTTTAGGTGTTTGATTTCAAGCTTGCTCATCGGGTAGATGTTTGGGAGACGATCAGGGAGTTCCTTCTCCATTCACCTTTTAGAGAGAGACCAATTTCTTTGGTTAGTTGAGTTATATGCTATTTTGTGGGATATTGAGGGGGTAACAAGATGCTTAGGGGTATGGAGAAGACCTTGGTGTTGGAATTTATGTCCTAAAACTCGTAGTTCGTAGTTGAAAATCATATTCTATTAAATAGAGTTGTTGAGGAATTATTAGTGAAACTGATAGTACAAGCAATGTGATTCTGAATCGTTCATGTACATGAAAGTGGAGACATCCTATGTAAAAAATTTACATAAAACTAAATTATGAAATGGTCAGTTTTACGTAATAACATCGTTTACTATATAAAACTGACTATTTTGATTATTGATGACTTAGGTAACTTAATTTTAATCTTGAGCTAACTATGAATTACTGTTCACACGGGATTATCCTTAGATTTGCATAGGTGAAGGCAGCACATCAGTGTTGGCCCAATAAGCCTTCCATTTCACGGTAAGTCCAAGTGGATAACTGGAAACATAGGATGCAAGATGGAATTCCTTTTTGACTAACTTTAGAGTTAGTAGATATGTTGTTCTCTTATGCACTGAATCTAGGTCTTGAACAAGGGGCCTCACCCTCTAATTGGTCCAAGAGGGATTCAATTTATTGGTTGGACCTTAAACCGATTGTTTATTAAAGAATTAATGGGACTTGAGGAATAAGATTTAATATTGGGGGTAAAACAATATTTTGACCCAGTCGGGATTACGAACAACCTGTGAAGGACTAACTTACCGATCATAGTTTTATATTAAACGGATACAAATATATCTATAATGAGGGGAGTGCAACTGTGAGACTTTAGTGGAATGATCTGTTAGTTAACGAATGTTGATTAGCTCGGTCTAAAAGAGTTTAGCCAGTTAACCTCGAATCGTGGAGCCCATAATCTATAGGTCCATTAGGTTCTTCTGCTAGCTCATATGAAATTAAGTAATTAACTTAGAACAGTATGATGAATGATTCGAATTGTTCGAACTAGGTAATGAAAAAGAAACTGACAAGTATATTTGATATAGCTGTTGGTTATTAGTTTAGAGATGTAGTTTTTATGTTTAAATATGATTTAAATATATAAAATAATACAGATTCATATTTGGAAGCTCTAAAATTATGGAAATGGTCAAAACTGTAAAAGTCAACCACTTTTGACTTTGAAAAGTCAAATTTTGACCGACAATTCATTCAAATGTGATTTGAATTTCGAGAAAATGAATGTGGATTCATGCTCGAGAGGTCGGAATCAGTTAAAACAAACAAAATGGTAAAAAGTCAAAATATTGACTTTTTTTGTCAAAGTTTGACTTTGACTAATTTTAGGATAAGACCATTTTGCTCTTAGTGGGAAAATCCAACCAATTTGTTGAAGGTTAGTGGGCTAGGTGTTGCCTTATTGTGAAGACAAAAAGCTCACTAAATGTTGGTGGGTTATGTGTTGTTGTGTTTTGGTGAAGCACAAATATGCATATTACATGGTTTTTTCTTATAATTTGTGTTTTCAAAATGATTTTGGGGTTGGCCCTTTTGGTTACTCTCTCAAGTGGGTTGGATTTATCCACTCACTTATTGTTTGTATAATAATTTTTCTTCACCAAGATATCTCTGAACCCTAAGCCCAATTCCTCAACTTCCATCTCTTTCTCTGTCTTGGTTCCTTCATCCATCGGGTCCCAGAATCCAATTTGGAGCCGGGAGAATAGTAGGTCAACTCTAATGGTGGAGAATAGTAGGTCAACTCTAATGGTGGACTGGTTGATGTTTGAATGGAGAATTGAGCAATTACAGAGCTACGAAGGTGAGATTTAACTTAACCCTAATTTCTGTTTAATTTAGGCAATTTAGATGTTAATTTAGTGCAATTAGATTTAGAGTAAAATTGATCCAGTTTATGATGCGCATGTCTTATGTATCCATCACCTGGTGATATTTGGTTCTTGGTAGGGATGCAATCAGTTCGACTTGGCTTGGTTTGAGTCTCGAACCGAAACCGAACTGCCATATATTACTATGGAAATGGGAAAATCGCACCGAACTGCCTATGAATACTAATCGAACCGATGAGAACCAGTTTCTTTGGTTTGCTTTTTGGTTCTCATTAGTAATGGACTGGTTTTGTCCCTCCAAGTGAGGGCCGACGAGCCCATTTCGTATTATTGGATCAGGCCCAAAGCAAGTCAAGGAAATTTGTGGAACTCGCGTGTAAGCATATTAAAAAATAAAAGATTTGTGTTCACCCAGACTCGAGCATGCACACAAGAGCATTTAATTGAATGGCACTGCTACTAGAGATGCGTCTCTTCATTGGTTAAAATATTGGTTTTTTAATATAATTATAGTTTTGGTCAGCTCGGTTATGGTTTATTTGGTCAACCAAAATTTTGATCAGTTTTTGAACTTTAAAACTTGAACCTTTGAACCAAACTGTTAGTAAATCGAGCTGACATCAGTTTTGGTCGGTTTTTATTGATTTTCAATTTGTCCTTGCACTCTAGTTCTTGGTGAGGTTCCATGTTTCTCTTTGGGCTTGTTCTCACAGACTTATTTGTAAGTATCCTCTAAGTAGCATTTTACATGGAAACTCTTTCTCTAGAGGGGCTTTGTCGACTTGCTTTTATTGTTGCTCTTGTGTTCTTTAATTTTTTTTCTCAATGAAAGCAATTTTTAGATCAAAAAATATATATTTTATTGAGTACAGCTCACTTGTAATGTCTTATTGTTGCCTCTTGCGTAAAGGCGATTATGAAACTTGTCACCTTAAGGTGTGCCCTTTGTTAATTGATTCTTGTTATTAATTGTCATTAATCTGGCAGGACTGATTACTTTGTTATCAAGTTGTTAAGGTTAGTTATATGCTTCAAATTTATCTTCCATCGCTCCAAATTTGACCCAAAAGCTCATCCAGCATATTTGTTAGGTATCCTCCTGGAATAAAGGGATATAAGCTCTATGATATGACTAAGAATTCTTTCTTTGTATCCAAAAATGTCCTATTCTTTGAAGACTTATTTCCCTTCCACAACCTTGGAGACACTACACCAGTCATGATTTCCTGGATGAGTTTGTGCTTCCATGTCCGCTGTTTGTTATTCCTGAAGCTATCTCAAGCACCACACCTCAACATAATAATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAACTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCGCAACATGATTGGGAAGAAACATGTCACTTCAACAGCCCCCTATTTCTTTGGCAAATATCTTTCTTATGAATCTTATTCACCTAGACATAAACACTATTTGCTTAATGTGACTGTTTATGAACCTACCTTCTGTCACCCAGCTGTAAAGTTTCAGAATTGGAGAGATGATATGGTGAAGAAATAAATGCAATGGAACGTAACAAGACTTGGATAGTGACTTCATCGCCCAAAAGTCAACACATACTAGGAAGCAAATGGGTGTATAAAGTCAAATATCTTCCCGGTGGAACTGTTGATCGGTACAAGGTGCGCCTTATTGCTTAAGGCTATTATCAACAAGAAGGCATGGACTTTTTTGACACATTTCCTTCCGTGGCCTTTGTCACAGTAAAGGTATTTCTATCCTTAGTGACCTCCTTTAATTGGCAATTTATTCAAATGGATATTACCAATGCCTTTTTAAATGGAGACTTATTTGAAGAGATTTATATGTTCTTACCCATGAGATACAAGACAACTATAATACCAAATAAGGGGGAGAAGCTCGTTTGTCGATTGAATAAGTCAATATATGGCTTCAAACAAGCCTTTAAACAATGGTTTGTGAAGTTTTCTTCTGTATTGTCTACACATGGCTTCATCCAGTCAAAGTCCGACTAGGCTATATTCGTGGAAGTGGTGAAACCTTTGTTGCATTGTTAGTATAGATGGATAACATATTACCAATTGGACCTTCCCCGGATGAGATCAATGTTATCAAAAAAGATCCTCAAAAGCCATTTTAAAGTTAAGGACTTGGGACAAACCAAATATTTCCTAGGATTAGAGTTATCTCGATCCAAACAAGGTTTGTTTCTATCACAATGAAAATATTCCCTTCAAATCCTTGAAGACACTGAATACCTTGCTGCGAAGCTTGCTTCATTACCTATGGATCCAAACATCAAGCTCTCAAAAGCCAACTAATACTCATCTGAATGCTGCTCATCACTTGTTGAAATATTTAAAACGCCAGGGCAAGGCATTTTGATTAAGCCAACTCACTAGTTTCATCTCAAGGCTTATGTTGACACTGATTGGGGGGCATGCCTTGACACTCGACAATCCATTTCAGGCTATTGTATTTTCTTAGGGAACTCATTAGTCTCATGGAAATCGAAGAAGCAAGTCACTGTTTCGAGATCATTTGCAGAGGCAGAATATATAGAGCCTTGGCATCTGTAATAAGTGAACTTATATGGATTTCTCAACTTCTAATTGATCTACACGTTCAACATATGTTACCAACAACTGTGTTTTGTGACAACCAAGCTGCCGTTGCTATTGCATCCCATCCAATCCTACCTTCCATGATCAGACGAAGCACATAAAAATCGATTGCCACTTTGTAAGAGACAAGATCATTGATGGCTTCTTGAAAGTATTGTCAATTCGATTACCCTTACAACTAGCTGACATGTTTACCGAGTCATTATCGGCTGTTTTGTCAAAACTTTTTGTCAAGTTGGGTGTCCTTGATGTCCATTTCCAACTGAGGAGTATTAAAATGATGCCTTGTAAATAATTGATTCTTGTTATTAATTGTCGTTAATCTTGTAGGATTGGTTTCTTTGTTATCAAGTGATTTTTTTTTTGAAAAGGATACGAGTCTCAATATTATTAGTATAAATAAAGAGACAAAGCTCAATGTACATGAGGGTTATACAAAGAGCAATAGGGGAAGGAGGATTAGCAGGCACATCCGAGCATCTCAAGTAGGTTGACACCCCCTTAGCGCCCTTAACACATCCAAAAAGCGACAATACAAGATCAAACAAAAAACCACAAATACAAAGCCAAAAAAAAATGATAAAAAGAATCTGTCCAAAGCAAAATCATAAATAAAAGGCAGCATGCTGAGAACAAAGAAGAATAAGCCTTGATTGATTGAACAAAAAGCTGTTTGAAGCATGGGGCTGATCAGGAAGTCCTGATGATCAAGGACTTCAAAGTGGGGAGGCTGTGAAGGCTGGCCAATATAACACAATATCCTACGTCAAAGTTCTTTTTCATTACTTTTTCTAAAAATTCTCAATCTACTCTGTCAAAGGCCATTTCAAGGTCTAATTTAGTGATCCATCCTTTCTTTTTTCGGATTCTATAGTCCTCCACAGCTTCGTTTGCTATTAAAATAGGGTCCAAGATTTGACGCCCTTCCAGAAGGCCACATTATGATGGAGCAATAATACTTGGCATTACTTTCTTTAATCTTTCTGCAAGAACCTTTGCAAACAACTTTTAAATTAATGTTGAAACTGATCCAGCAGAGAACGTGAAACTGACCTTCCTTCTCTTGACCATGAATGAGAAGTAACTCCATTAAGAAATAACCCCAATATTCAATGTTTATTACCCTTGCACTTTGAAAACGTTGTTAAGTACTTGCACTTTACCAATAATGAGGTCAAATATTGACATGTTGAAAAAAAACGCATGTATTTGGATGTTGAAGTACTTTTTAATTTTATTGGTTTCATATCTCTATACAAACTAACTTCATATCTCATATACAAACTATGTCCCCTGTTCTTTCTTCAGGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGGTATTTGATTGTTGTAAACTAGTACTAAATTATTTCAAAATATTTGGTGCCTTGAATAAGATTATTATTTTTTTTTAAAAATAACAATGAGGATAACAATTATTATTATTTTGTAGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCGTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGTAATTTTCTTTTCATGAAACTTCATCCAACGTCGTTGTAGTTATAAATGTCGATAATTTACAGTTTATAACTCCACTGCACATTTATTTTATGGTTTTTAGGGTATTATATAGTTGTTTACAGTAAACACCAGTCCTGTTACAACTAGAGCTATTCAATTTGCATGTTCATGGAGTTAAGAAAATCAATCTAAATTTCTGTGGTAAGACTACTACGCTGCAATTTATTTCAATGAAAAAGTGAAGTGATTGATATCCTTTCAAGGTAAGGTGTGGATTCAAATCATGATGGTAGTCATCTAAGATACTAAAATATCTTACAACTTTCTTAATACTCAATGTAGTACCGAGTAAGATTTGATAGTTGTGCCTATGATTAATATAGATTTATTTAACTTATTCTGGTGCCCACAGTTGTTAAAAATGCACAAAAACTGGGGGGCCTTTGTTTTGTCTACAATATGATGGTATCATATGGATTGTAAATGAATTCAAATGAGTGATTAGTTGGAGGGAAGTTACTCTTGTTTTATTGGGCTATATGATAGGAGAGATGGCATGTCCCCTCAAGAGTTCTGCTATTTCTATGTTCTACTTGAATTATATTAATTTAGGCTCCATATGTGTAAGTTATTTCGATCGTATAACTAAATCTCCTTTTGTTAAAAATGACCAGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGACTGTGAAGTGACCTGTACTATAAGTACTCATCTGCCTCAAAGGTAACATTTTAGAGTAGTTTTTGGGCATAAATACCATGAATACAAGATCACATTTTAGTAGTAGATCCAGGTTAATAAGTTGGTCTCGTCATTCATATAATTCTCTGAGACTGACTGTGCGAGTATCCAACCGTCAGTTCATATGTTAATACTAAAGGTAGCTTTGTAGGTTGTCCTTGGATAATCATACTATTAACATTAAGCTTTCTCCTCGCTGTTTCTTTTTTAATATGATGCTTCAAATTCATTGCTTTAATATTTGTCAATGCAGGGGTTCGAAATGATATCACATTGGGCTTTTTGGTCTTTTTGGTGGGAGAAGTGATTTTGGCATTAGAAGAGTTTGCAATTGCTTTGGGAAAGTCAAATGATAGGTCCACTAGAAGAAAGGTTGTTGTAATTGCTTTCACAAAAACTAAGCATGTTTCTGGTGCAGCTCTAGGTCTAGAAGTCTGTTTTTATTAGATTTGGGAAGCTTTAGAAGCGAAGCCAAGAAATGTTGGTTTGGGAAAGATTTTGTTGTAGTCTAGTAATGGTTG

mRNA sequence

TCTCCTCCAATTCCATTACCCTCGATAATAATCGACGATTATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCGTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGACTGTGAAGTGACCTGTACTATAAGTACTCATCTGCCTCAAAGGGGTTCGAAATGATATCACATTGGGCTTTTTGGTCTTTTTGGTGGGAGAAGTGATTTTGGCATTAGAAGAGTTTGCAATTGCTTTGGGAAAGTCAAATGATAGGTCCACTAGAAGAAAGGTTGTTGTAATTGCTTTCACAAAAACTAAGCATGTTTCTGGTGCAGCTCTAGGTCTAGAAGTCTGTTTTTATTAGATTTGGGAAGCTTTAGAAGCGAAGCCAAGAAATGTTGGTTTGGGAAAGATTTTGTTGTAGTCTAGTAATGGTTG

Coding sequence (CDS)

ATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCGTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGA

Protein sequence

MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR*

Homology

[Close]

BLAST of Cucsa.012600 vs. Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.7e-24
Identity = 77/212 (36.32%), Postives = 118/212 (55.66%), Query Frame = 1


Query: 58  SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDE 117
           S AP P P P+ +       YK+ L EY Q+A   +P+Y T  +G     K++STVMVD 
Sbjct: 26  SPAPLPPPPPHCN-------YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDG 85

Query: 118 VHYVSPNTFRNRRAAEQDAARVAFEYISKKTKD-----DAFLLLREDLMLCKSILSEYTD 177
             + S    R  + AEQDAA+VA++ + ++ +      D F L+ +D++  KSIL EYT 
Sbjct: 86  EEFSSTFCHRRVKDAEQDAAKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTT 145

Query: 178 KMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDAT 237
           K   ++P Y+    +GSV  + S++ F G  YT    R KK+AEQ AARAA+ SL   AT
Sbjct: 146 KTKTDQPEYSVTKTEGSVTPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLL--AT 205

Query: 238 NPKSQKALGDIIASKVRFHAMLQKVKDSNFSQ 265
           N  S   +  I+ SK +   +++ +  S +++
Sbjct: 206 NYTS---MAKIVRSKEK---LIRAISPSGYNK 222

[Close]

BLAST of Cucsa.012600 vs. Swiss-Prot
Match: DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.2e-22
Identity = 69/186 (37.10%), Postives = 96/186 (51.61%), Query Frame = 1


Query: 46  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDE 105
           PP+ LP    +  P P+ A A I   N       +V+K+ L EY QKA +  P Y T  E
Sbjct: 4   PPTPLPPETANTSPAPNGATAGIRVENC------YVFKSRLQEYAQKAGLQTPEYHTFKE 63

Query: 106 GSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLM 165
           G    P ++STV+++   Y S   F NR+AAEQ AA VA   I K    +A +   ++  
Sbjct: 64  GPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETG 123

Query: 166 LCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAAR 225
           LCK++L EY  KM    P Y    +   +A F  T+   G+ Y     RTKK+AE  AAR
Sbjct: 124 LCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAAR 183

Query: 226 AAILSL 228
            A+L++
Sbjct: 184 TALLAI 183

[Close]

BLAST of Cucsa.012600 vs. Swiss-Prot
Match: DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.4e-22
Identity = 68/186 (36.56%), Postives = 95/186 (51.08%), Query Frame = 1


Query: 46  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDE 105
           PP+ LP    +  P P+ A A I   N       +V+K+ L EY QK  +  P Y T  E
Sbjct: 4   PPTPLPPETANTSPAPNGATAGIRVENC------YVFKSRLQEYAQKTGLQTPEYHTFKE 63

Query: 106 GSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLM 165
           G    P ++STV+++   Y S   F NR+AAEQ AA VA   I K    +A +   ++  
Sbjct: 64  GPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETG 123

Query: 166 LCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAAR 225
           LCK++L EY  KM    P Y    +   +A F  T+   G+ Y     RTKK+AE  AAR
Sbjct: 124 LCKNLLQEYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAAR 183

Query: 226 AAILSL 228
            A+L++
Sbjct: 184 TALLAI 183

[Close]

BLAST of Cucsa.012600 vs. Swiss-Prot
Match: DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.6e-22
Identity = 65/177 (36.72%), Postives = 92/177 (51.98%), Query Frame = 1


Query: 55  PIP----SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYR 114
           P+P    + +PAPI +         +V+K+ L EY QKA +  P Y T  EG    P ++
Sbjct: 9   PLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFK 68

Query: 115 STVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEY 174
           STV+++   Y S   F NR+AAEQ AA VA   I K    +A +   ++  LCK++L EY
Sbjct: 69  STVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQEY 128

Query: 175 TDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSL 228
             KM    P Y        +A F  T+   G+ Y     RTKK+AE  AAR A+L++
Sbjct: 129 AQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 185

[Close]

BLAST of Cucsa.012600 vs. Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.9e-21
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 1


Query: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
           +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ 
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 73

Query: 136 AARVAFEYISKKTK-DDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTK--HNQGSVAF 195
           AA VA   ++K ++          +  LCK++L EY  KM    P+Y  +     G V  
Sbjct: 74  AAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 133

Query: 196 FQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATN 234
           F  T+   G+ YT    RTKK+AE  A R A+L++  D  N
Sbjct: 134 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKN 174

[Close]

BLAST of Cucsa.012600 vs. TrEMBL
Match: A0A0A0LCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1)

HSP 1 Score: 448.0 bits (1151), Expect = 1.2e-122
Identity = 226/229 (98.69%), Postives = 228/229 (99.56%), Query Frame = 1


Query: 157 REDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 216
           + DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE
Sbjct: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156

Query: 217 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 276
           QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE
Sbjct: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216

Query: 277 RVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 336
           RVAMTVNEGKELKDAVLDGG+VCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS
Sbjct: 217 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 276

Query: 337 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 386
           TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR
Sbjct: 277 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 325

[Close]

BLAST of Cucsa.012600 vs. TrEMBL
Match: A0A0A0LAZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 4.4e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 1


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of Cucsa.012600 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 146/337 (43.32%), Postives = 199/337 (59.05%), Query Frame = 1


Query: 59  AAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEV 118
           AA    P+P+ +   +  ++KN L EYTQ++ I +P+YQT++EG    PK+RSTV+VD  
Sbjct: 4   AAKVDCPAPSSTRLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGA 63

Query: 119 HYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLER 178
            Y SPNTF +R+AAEQD AR+A E+ISKK KD+   L+RED + CKSIL+E+  KM LE+
Sbjct: 64  TYTSPNTFSHRKAAEQDVARLALEFISKKIKDEGCPLIREDTVFCKSILNEFAVKMNLEK 123

Query: 179 PIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQK 238
           P YTT   +G +  F S+LVF+GV YT D GR KKEAEQLAAR  ILS+     N  S  
Sbjct: 124 PTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSI---LGNSGSGT 183

Query: 239 ALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELK-----DAVL 298
            L +II SKV+ +A L +VKD ++       +P      +     +GKE++     D +L
Sbjct: 184 LLSEIIKSKVKLYAALHRVKDPSY--IHTGILPIGLTSGIPPC--KGKEVEVAPGTDQLL 243

Query: 299 DGGV---VCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGS 358
              V   + G +     T     E    KP+ SS ++  PI FV S  E+P+    T G 
Sbjct: 244 PTAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSSEVIAPPISFVPSVFEQPLVVSPTTGR 303

Query: 359 KRKSKNKRKARKKLCMENR--VATETSQTAAPCSVAR 386
           KR  KNK+KA KKL  + +  VA      A+PCSVA+
Sbjct: 304 KRNRKNKKKANKKLRTDAQLPVAVLPLNQASPCSVAQ 333

[Close]

BLAST of Cucsa.012600 vs. TrEMBL
Match: A0A067KA91_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.4e-51
Identity = 127/295 (43.05%), Postives = 167/295 (56.61%), Query Frame = 1


Query: 29  PIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSP---NLSDHTQIFVYKNHLHEY 88
           P P  +SN          P+     VP+ + APAP  S    +        ++KN L EY
Sbjct: 4   PKPYYDSNRNHAASQYQNPNQASASVPLLAQAPAPATSTVAASTPSSPHQLMHKNRLQEY 63

Query: 89  TQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYIS 148
           TQK+ + +P+YQT++EG    P++RSTV+VD   Y SPNTF +R+ AEQDAARVA E I 
Sbjct: 64  TQKSSLQLPIYQTVNEGHQHAPRFRSTVIVDGEQYTSPNTFAHRKGAEQDAARVAMECIL 123

Query: 149 KKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYT 208
           KKTKD+   L+ ED + CKSIL EY  KM +E+P+Y T   QG    F STLVF+GV YT
Sbjct: 124 KKTKDEGCPLIYEDKVFCKSILYEYAVKMQIEKPMYNTFQPQGLFPIFGSTLVFNGVTYT 183

Query: 209 SDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQF 268
            D GRTKKEAEQLAAR+AILSL     NP S   + +II SK + +A L K K+S     
Sbjct: 184 GDTGRTKKEAEQLAARSAILSL---MGNPVSSAIISEIIKSKSKLYASLYKFKESQLDAQ 243

Query: 269 QPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPEFSATKP 321
                  +    +   VN+ KE +  ++   V   AI +  PTS      ++T P
Sbjct: 244 LDSQSQLDAQHGIVPAVNKNKEAEVVLVGNNVPLRAIPQ--PTSPQPHAQNSTVP 293

[Close]

BLAST of Cucsa.012600 vs. TrEMBL
Match: U5GC64_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14370g PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.7e-50
Identity = 153/442 (34.62%), Postives = 209/442 (47.29%), Query Frame = 1


Query: 6   TVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPD-------IHPPSVLPDLVPIPS 65
           T +  AP Q+P P    PT    P+P + + +  P PD       +H P+  P  VP P+
Sbjct: 38  TSQVIAPNQAPVPD---PTPSQAPVP-DPTPSQAPVPDPTPSPAPVHEPTPSPAPVPDPT 97

Query: 66  AAPAPIPSPNLSDHTQI---------------------------FVYKNHLHEYTQKAKI 125
             PAP P   LS                                 +YKN L EYTQK+ +
Sbjct: 98  PNPAPAPDSTLSPSPAASTTTLTSRVSENISFSKKLVKKGLPDNLMYKNRLQEYTQKSSL 157

Query: 126 AVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDD 185
            +PVYQT++EG   +P++RSTV VD   Y S  TF +R+AAEQD A +A E I K+ KD+
Sbjct: 158 QLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDVANLALESILKRVKDE 217

Query: 186 AFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRT 245
              LL  D + CKSIL+E+  K+  E+P Y T  + G +  F STLVFDGV YT D GR 
Sbjct: 218 GCPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRN 277

Query: 246 KKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMP 305
           KKEAEQLAARA ILSL     N  S K L +II SK + +A L +VKD + SQ     + 
Sbjct: 278 KKEAEQLAARAVILSL---IGNSGSSKILYEIIKSKSKLYAALDRVKDPSHSQPNIVPVA 337

Query: 306 ENTVERVAMTVNEGKELKDAVL---------------------------DGGVVCGAISE 365
                    TV++ +E+  AV+                           +  V    + +
Sbjct: 338 VKVGHCSETTVDQEQEVSTAVVRDAAPVSANIVPVAVKVGHCSETTVDQEQEVSTAVVRD 397

Query: 366 ACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEP-VGYHATIGSKRKSKNKRKARKK 386
           A P S   P  S   P  S    + P   +    E+P V    +  +K++ KNK+K  K+
Sbjct: 398 AVPVSAIPPAASGMHP--SHHDSKRPRPDLHPVSEQPLVVDFGSSSAKKRRKNKKKDNKE 457

[Close]

BLAST of Cucsa.012600 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-22
Identity = 61/161 (37.89%), Postives = 87/161 (54.04%), Query Frame = 1


Query: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
           +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ 
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 73

Query: 136 AARVAFEYISKKTK-DDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTK--HNQGSVAF 195
           AA VA   ++K ++          +  LCK++L EY  KM    P+Y  +     G V  
Sbjct: 74  AAEVALRELAKSSELSQCVSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQ 133

Query: 196 FQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATN 234
           F  T+   G+ YT    RTKK+AE  A R A+L++  D  N
Sbjct: 134 FTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDTKN 174

[Close]

BLAST of Cucsa.012600 vs. TAIR10
Match: AT5G41070.1 (AT5G41070.1 dsRNA-binding protein 5)

HSP 1 Score: 74.3 bits (181), Expect = 1.8e-13
Identity = 51/177 (28.81%), Postives = 90/177 (50.85%), Query Frame = 1


Query: 77  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
           +YKN L E  Q++   +P Y  I EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 137 ARVAFEYISKKTKDDAFLL-LREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAF--F 196
           A V+   +S +    +    + ++  + K++L E   + GL+ P+YT+  + GS  F  F
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRS-GSCHFPGF 120

Query: 197 QSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH-----EDATNPKSQKALGDIIA 246
             T+   G+ +T +  +TKK+AE+ AA AA  SL      +     K Q+A+  +++
Sbjct: 121 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSSLDSQDEEKEQEAVARVLS 176

[Close]

BLAST of Cucsa.012600 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 765.8 bits (1976), Expect = 3.7e-218
Identity = 384/385 (99.74%), Postives = 385/385 (100.00%), Query Frame = 1


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180

Query: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 240
           YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL
Sbjct: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 240

Query: 241 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCG 300
           GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGG+VCG
Sbjct: 241 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 300

Query: 301 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 360
           AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA
Sbjct: 301 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 360

Query: 361 RKKLCMENRVATETSQTAAPCSVAR 386
           RKKLCMENRVATETSQTAAPCSVAR
Sbjct: 361 RKKLCMENRVATETSQTAAPCSVAR 385

[Close]

BLAST of Cucsa.012600 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 759.2 bits (1959), Expect = 3.5e-216
Identity = 383/385 (99.48%), Postives = 384/385 (99.74%), Query Frame = 1


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180

Query: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 240
           YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH DATNPKSQKAL
Sbjct: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH-DATNPKSQKAL 240

Query: 241 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCG 300
           GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGG+VCG
Sbjct: 241 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 300

Query: 301 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 360
           AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA
Sbjct: 301 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 360

Query: 361 RKKLCMENRVATETSQTAAPCSVAR 386
           RKKLCMENRVATETSQTAAPCSVAR
Sbjct: 361 RKKLCMENRVATETSQTAAPCSVAR 384

[Close]

BLAST of Cucsa.012600 vs. NCBI nr
Match: gi|659114468|ref|XP_008457066.1| (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 670.6 bits (1729), Expect = 1.6e-189
Identity = 339/385 (88.05%), Postives = 358/385 (92.99%), Query Frame = 1


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLREDL+LCKSILSEYTDKMGLERPI
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLREDLILCKSILSEYTDKMGLERPI 180

Query: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 240
           YTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAEQLAARAAILSLHEDA N KSQK L
Sbjct: 181 YTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAINIKSQKTL 240

Query: 241 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCG 300
            DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVERVAMTVNE K +KDAV D GVVCG
Sbjct: 241 ADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVSDSGVVCG 300

Query: 301 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 360
           AISEACPTS F+PEFS+TKP+GSSPL+RLPIEFV STLE PVG HAT GSKR+SKNKRKA
Sbjct: 301 AISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRRSKNKRKA 360

Query: 361 RKKLCMENRVATETSQTAAPCSVAR 386
           RKKLCMEN VATETSQTAAPCSVA+
Sbjct: 361 RKKLCMENGVATETSQTAAPCSVAQ 385

[Close]

BLAST of Cucsa.012600 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 664.1 bits (1712), Expect = 1.5e-187
Identity = 338/385 (87.79%), Postives = 357/385 (92.73%), Query Frame = 1


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLREDL+LCKSILSEYTDKMGLERPI
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLREDLILCKSILSEYTDKMGLERPI 180

Query: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 240
           YTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAEQLAARAAILSLH DA N KSQK L
Sbjct: 181 YTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLH-DAINIKSQKTL 240

Query: 241 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCG 300
            DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVERVAMTVNE K +KDAV D GVVCG
Sbjct: 241 ADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVSDSGVVCG 300

Query: 301 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 360
           AISEACPTS F+PEFS+TKP+GSSPL+RLPIEFV STLE PVG HAT GSKR+SKNKRKA
Sbjct: 301 AISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRRSKNKRKA 360

Query: 361 RKKLCMENRVATETSQTAAPCSVAR 386
           RKKLCMEN VATETSQTAAPCSVA+
Sbjct: 361 RKKLCMENGVATETSQTAAPCSVAQ 384

[Close]

BLAST of Cucsa.012600 vs. NCBI nr
Match: gi|778680848|ref|XP_011651406.1| (PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus])

HSP 1 Score: 458.8 bits (1179), Expect = 9.7e-126
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 1


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180

Query: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH 229
           YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH
Sbjct: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH 228

The following BLAST results are available for this feature:

BLAST of Cucsa.012600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRB4_ORYSJ	3.7e-24	36.32	Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE...	[more]
DRB7_ORYSJ	1.2e-22	37.10	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE...	[more]
DRB8_ORYSJ	3.4e-22	36.56	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE...	[more]
DRB3_ORYSJ	7.6e-22	36.72	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE...	[more]
DRB1_ARATH	2.9e-21	37.89	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1	[more]

BLAST of Cucsa.012600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCN7_CUCSA	1.2e-122	98.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1	[more]
A0A0A0LAZ4_CUCSA	4.4e-85	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1	[more]
D7TSR3_VITVI	1.1e-59	43.32	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=...	[more]
A0A067KA91_JATCU	2.4e-51	43.05	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1	[more]
U5GC64_POPTR	2.7e-50	34.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14370g PE=4 SV=1	[more]

BLAST of Cucsa.012600 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09700.1	1.6e-22	37.89	dsRNA-binding domain-like superfamily protein	[more]
AT5G41070.1	1.8e-13	28.81	dsRNA-binding protein 5	[more]

BLAST of Cucsa.012600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464150\|ref\|XP_004149792.1\|	3.7e-218	99.74	PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus]	[more]
gi\|778680845\|ref\|XP_011651405.1\|	3.5e-216	99.48	PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus]	[more]
gi\|659114468\|ref\|XP_008457066.1\|	1.6e-189	88.05	PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo]	[more]
gi\|659114470\|ref\|XP_008457067.1\|	1.5e-187	87.79	PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|778680848\|ref\|XP_011651406.1\|	9.7e-126	100.00	PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003725	double-stranded RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.012600.1	Cucsa.012600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 78..144 score: 1.3E-16coord: 164..233 score: 7.3
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 164..226 score: 8.4E-11coord: 78..143 score: 5.
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 163..228 score: 1.8E-7coord: 78..145 score: 5.5
IPR014720	Double-stranded RNA-binding domain	PROFILE	PS50137	DS_RBD	coord: 193..229 score: 9.708coord: 77..146 score: 11
None	No IPR available	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 2..264 score: 1.7
None	No IPR available	PANTHER	PTHR11207:SF8	SUBFAMILY NOT NAMED	coord: 2..264 score: 1.7
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 74..144 score: 2.04E-16coord: 160..227 score: 4.87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.012600	Cla013177	Watermelon (97103) v1	cgywmB367
Cucsa.012600	Csa3G345370	Cucumber (Chinese Long) v2	cgycuB290
Cucsa.012600	ClCG05G011010	Watermelon (Charleston Gray)	cgywcgB345
Cucsa.012600	CSPI03G21780	Wild cucumber (PI 183967)	cgycpiB299
Cucsa.012600	CsaV3_3G021570	Cucumber (Chinese Long) v3	cgycucB303
Cucsa.012600	Cla97C05G093280	Watermelon (97103) v2	cgywmbB351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.012600	Cucurbita maxima (Rimu)	cgycmaB0548
Cucsa.012600	Cucurbita maxima (Rimu)	cgycmaB0551
Cucsa.012600	Cucurbita moschata (Rifu)	cgycmoB0549
Cucsa.012600	Cucurbita moschata (Rifu)	cgycmoB0552
Cucsa.012600	Melon (DHL92) v3.5.1	cgymeB343
Cucsa.012600	Cucurbita pepo (Zucchini)	cgycpeB0531
Cucsa.012600	Cucurbita pepo (Zucchini)	cgycpeB0532
Cucsa.012600	Bottle gourd (USVL1VR-Ls)	cgylsiB322
Cucsa.012600	Melon (DHL92) v3.6.1	cgymedB338
Cucsa.012600	Silver-seed gourd	carcgyB0859
Cucsa.012600	Wax gourd	cgywgoB393