Csa3G345370 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G345370
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDouble-stranded RNA binding protein, putative; contains IPR014720 (Double-stranded RNA-binding-like domain)
LocationChr3 : 18008430 .. 18013392 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCAAGCACCACACCTCAACATAATAATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAACTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCGCAACATGATTGGGAAGAAACATGTCACTTCAACAGCCCCCTATTTCTTTGGCAAATATCTTTCTTATGAATCTTATTCACCTAGACATAAACACTATTTGCTTAATGTGACTGTTTATGAACCTACCTTCTGTCACCCAGCTGTAAAGTTTCAGAATTGGAGAGATGATATGGTGAAGAAATAAATGCAATGGAACGTAACAAGACTTGGATAGTGACTTCATCGCCCAAAAGTCAACACATACTAGGAAGCAAATGGGTGTATAAAGTCAAATATCTTCCCGGTGGAACTGTTGATCGGTACAAGGTGCGCCTTATTGCTTAAGGCTATTATCAACAAGAAGGCATGGACTTTTTTGACACATTTCCTTCCGTGGCCTTTGTCACAGTAAAGGTATTTCTATCCTTAGTGACCTCCTTTAATTGGCAATTTATTCAAATGGATATTACCAATGCCTTTTTAAATGGAGACTTATTTGAAGAGATTTATATGTTCTTACCCATGAGATACAAGACAACTATAATACCAAATAAGGGGGGAAGCTCGTTTGTCGATTGAATAAGTCAATATATGGCCTCAAACAAGCCTTTAAACAATGGTTTGTGAAGTTTTCTTCTGTATTGTCTACACATGGCTTCATCCAGTCAAAGTCCGACTAGGCTATATTCGTGGAAGTGGTGAAACCTTTGTTGCATTGTTAGTATAGATGGATAACATATTACCAATTGGACCTTCCCCGGATGAGATCAATGTTATCAAAAAAGATCTTCAAAAGCCATTTTAAAGTTAAGGACTTGGGACAAACCAAATATTTCCTAGGATTAGAGTTATCTCGATCCAAACAAGGTTTGTTTCTATCACAATGAAAATATTCCCTTCAAATCCTTGAAGACACTGAATACCTTGCTGCGAAGCTTGCTTCATTACCTATGGATCCAAACATCAAGCTCTCAAAAGCCAACTAATACTCATCTGAATGCTGCTCATCACTTGTTGAAATATTTAAAACGCCAGGGCAAGGCATTTTGATTAAGCCAACTCACTAGTTTCATCTCAAGGCTTATGTTGACACTGATTGGGGGGCATGCCTTGACACTCGACAATCCATTTCAGGCTATTGTATTTTCTTAGGGAACTCATTAGTCTCATGGAAATCGAAGAAGCAAGTCACTGTTTCGAGATCATTTGCAGAGGCAGAATATATAGAGCCTTGGCATCTGTAATAAGTGAACTTATATGGATTTCTCAACTTCTAATTGATCTACACGTTCAACATATGTTACCAACAACTGTGTTTTGTGACAACCAAGCTGCCGTTGCTATTGCATCCCATCCAATCCTACCTTCCATGATCAGACGAAGCACATAAAAATCGATTGCCACTTTGTAAGAGACAAGATCATTGATGGCTTCTTGAAAGTATTGTCAATTCGATTACCCTTACAACTAGCTGACATGTTTACCGAGTCATTATCGGCTGTTTTGTCAAAACTTTTTGTCAAGTTGGGTGTCCTTGATGTCCATTTCCAACTGAGGAGTATTAAAATGATGCCTTGTAAATAATTGATTCTTGTTATTAATTGTCGTTAATCTTGTAGGATTGGTTTCTTTGTTATCAAGTGATTTTTTTTTTGAAAAGGATACGAGTCTCAATATTATTAGTATAAATAAAGAGACAAAGCTCAATGTACATGAGGGTTATACAAAGAGCAATAGGGGAAGGAGGATTAGCAGGCACATCCGAGCATCTCAAGTAGGTTGACACCCCCTTAGCGCCCTTAACACATCCAAAAAGCGACAATACAAGATCAAACAAAAAACCACAAATACAAAGCCAAAAAAAAATGATAAAAAGAATCTGTCCAAAGCAAAATCATAAATAAAAGGCAGCATGCTGAGAACAAAGAAGAATAAGCCTTGATTGATTGAACAAAAAGCTGTTTGAAGCATGGGGCTGATCAGGAAGTCCTGATGATCAAGGACTTCAAAGTGGGGAGGCTGTGAAGGCTGGCCAATATAACACAATATCCTACGTCAAAGTTCTTTTTCATTACTTTTTCTAAAAATTCTCAATCTACTCTGTCAAAGGCCATTTCAAGGTCTAATTTAGTGATCCATCCTTTCTTTTTTCGGATTCTATAGTCCTCCACAGCTTCGTTTGCTATTAAAATAGGGTCCAAGATTTGACGCCCTTCCAGAAGGCCACATTATGATGGAGCAATAATACTTGGCATTACTTTCTTTAATCTTTCTGCAAGAACCTTTGCAAACAACTTTTAAATTAATGTTGAAACTGATCCAGCAGAGAACGTGAAACTGACCTTCCTTCTCTTGACCATGAATGAGAAGTAACTCCATTAAGAAATAACCCCAATATTCAATGTTTATTACCCTTGCACTTTGAAAACGTTGTTAAGTACTTGCACTTTACCAATAATGAGGTCAAATATTGACATGTTGAAAAAAAACGCATGTATTTGGATGTTGAAGTACTTTTTAATTTTATTGGTTTCATATCTCTATACAAACTAACTTCATATCTCATATACAAACTATGTCCCCTGTTCTTTCTTCAGGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGGTATTTGATTGTTGTAAACTAGTACTAAATTATTTCAAAATATTTGGTGCCTTGAATAAGATTATTATTTTTTTTAAAAAAAATAACAATGAGGATAACAATTATTATTATTTTGTAGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAATGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCGTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGTAATTTTCTTTTCATGAAACTTCATCCAACGTCGTTGTAGTTATAAATGTCAATAATTTACAGTTTATAACTCCACTGCACATTTATTTTATGGTTTTTAGGGTATTATATAGTTGTTTACAGTAAACACCAGTCTTGTTACAACTAGAGCTATTCAATTTGCATGTTCATGGAGTTAAGAAAATCAATCTAAATTTCTGTGGTAAGACTACTACGCTGCAATTTATTTCAATGAAAAAGTGAAGTGATTGATATCCTTTCAAGGTAAGGTGTGGATTCAAATCATGATGGTAGTCATCTAAGATACTAAAATATCTTACAACTTTCTTAATACTCAATGTAGTACCGAGTAAGATTTGATAGTTGTGCCTATGATTAATATAGATTTATTTAACTTATTCTGGTGCCCACAGTTGTTAAAAATGCACAAAAACTGGGGGGCCTTTGTTTTGTCTACAATATGATGGTATCATATGGATTGTAAATGAATTCAAATGAGTGATTAGTTGGAGGGAAGTTACTCTTGTTTTATTGGGCTATATGATAGGAGAGATGGCATGTCCCCTCAAGAGTTCTGCTATTTCTATGTTCTACTTGAATTATATTAATTTAGGCTCCATATGTGTAAGTTATTTCGATCGTATAACTAAATCTCCTTTTGTTAAAAATGACCAGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGACTGTGAAGTGACCTGTACTATAAGTACTCATCTGCCTCAAAGGTAACATTTTAGAGTAGTTTTTGGGCATAAATACCATGAATACAAGATCACATTTTAGTAGTAGATCCAGGTTAATAAGTTGGTCTCGTCATTCATATAATTCTCTGAGACTGACTGTGCGAGTATCCAACCGTCAGTTCATATGTTAATACTAAAGGTAGCTTTGTAGGTTGTCCTTGGATAATCATACTATTAACATTAAGCTTTCTCCTCGCTGTTTCTTTTTTAATATGATGCTTCAAATTCATTGCTTTAATATTTGTCAATGCAGGGGTTGGAAATGATATCACATTGGGCTTTTTGGTCTTTTTGGTGGGAGAAGTGATTTTGGCATTAGAAGAGTTTGCAATTGCTTTGGGAAAGTCAAATGATAGGTCCACTAGAAGAAAGGTTGTTGTAATTGCTTTCACAAAAACTAAGCATGTTTCTGGTGCAGCTCTAGGTCTAGAAGTCTGTTTTTATTAGATTTGGGAAGCTTTAGAAGCGAAGCCAAGAAATGTTGGTTTGGGAAGGATTTTGTTGTATTCTAGTAATGGTTGGATTTTAGGTTATCTTAAACTTTGTTGAC

mRNA sequence

ATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAACTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCGCAACATGATTGGGAAGAAACATGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAATGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCGTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGA

Coding sequence (CDS)

ATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAACTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCGCAACATGATTGGGAAGAAACATGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAATGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCGTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGA

Protein sequence

MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVITEVANEADRSRSCEPTANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR*
Homology
[Close]
BLAST of Csa3G345370 vs. Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-08
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 1 

Query: 99  DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQL 158
           D++  KSIL EYT K   ++P Y+    +GSV  + S++ F G  YT    R KK+AEQ 
Sbjct: 125 DVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTPYVSSVSFAGHTYTGGAARNKKDAEQK 184

Query: 159 AARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQ 205
           AARAA+ SL   ATN  S   +  I+ SK +   +++ +  S +++
Sbjct: 185 AARAAVKSLL--ATNYTS---MAKIVRSKEK---LIRAISPSGYNK 222

[Close]
BLAST of Csa3G345370 vs. Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.6e-07
Identity = 30/78 (38.46%), Postives = 40/78 (51.28%), Query Frame = 1 

Query: 98  HDLMLCKSILSEYTDKMGLERPIYTTKHNQ--GSVAFFQSTLVFDGVVYTSDLGRTKKEA 157
           H+  LCK++L EY  KM    P+Y  +  +  G V  F  T+   G+ YT    RTKK+A
Sbjct: 97  HETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDA 156

Query: 158 EQLAARAAILSLHEDATN 174
           E  A R A+L++  D  N
Sbjct: 157 EISAGRTALLAIQSDTKN 174


HSP 2 Score: 42.4 bits (98), Expect = 1.1e-02
Identity = 28/66 (42.42%), Postives = 32/66 (48.48%), Query Frame = 1 

Query: 104 KSILSEYTDKMGLERPIYT-TKHNQGSVAFFQSTLVFDGVVYTSDLG-RTKKEAEQLAAR 163
           KS L EY  K  L  P+Y   K      + FQST++ DGV Y S  G   +K AEQ AA 
Sbjct: 17  KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 76

Query: 164 AAILSL 168
            A+  L
Sbjct: 77  VALREL 82

[Close]
BLAST of Csa3G345370 vs. TrEMBL
Match: A0A0A0LCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1)

HSP 1 Score: 647.9 bits (1670), Expect = 6.6e-183
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 1 

Query: 1   MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVITEVANEADRSRSCEPT 60
           MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVITEVANEADRSRSCEPT
Sbjct: 1   MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVITEVANEADRSRSCEPT 60

Query: 61  ANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLERPI 120
           ANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLERPI
Sbjct: 61  ANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLERPI 120

Query: 121 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 180
           YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL
Sbjct: 121 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 180

Query: 181 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 240
           GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG
Sbjct: 181 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 240

Query: 241 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 300
           AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA
Sbjct: 241 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 300

Query: 301 RKKLCMENRVATETSQTAAPCSVAR 326
           RKKLCMENRVATETSQTAAPCSVAR
Sbjct: 301 RKKLCMENRVATETSQTAAPCSVAR 325

[Close]
BLAST of Csa3G345370 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.4e-29
Identity = 94/239 (39.33%), Postives = 129/239 (53.97%), Query Frame = 1 

Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + D + CKSIL+E+  KM LE+P YTT   +G +  F S+LVF+GV YT D GR KKEAE
Sbjct: 102 REDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAE 161

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAAR  ILS+     N  S   L +II SKV+ +A L +VKD ++       +P     
Sbjct: 162 QLAARTVILSI---LGNSGSGTLLSEIIKSKVKLYAALHRVKDPSY--IHTGILPIGLTS 221

Query: 217 RVAMTVNEGKELK-----DAVLDGGM---VCGAISEACPTSQFQPEFSATKPDGSSPLMR 276
            +     +GKE++     D +L   +   + G +     T     E    KP+ SS ++ 
Sbjct: 222 GIPPC--KGKEVEVAPGTDQLLPTAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSSEVIA 281

Query: 277 LPIEFVRSTLEEPVGYHATIGSKRKSKNKRKARKKLCMENR--VATETSQTAAPCSVAR 326
            PI FV S  E+P+    T G KR  KNK+KA KKL  + +  VA      A+PCSVA+
Sbjct: 282 PPISFVPSVFEQPLVVSPTTGRKRNRKNKKKANKKLRTDAQLPVAVLPLNQASPCSVAQ 333

[Close]
BLAST of Csa3G345370 vs. TrEMBL
Match: A0A068U2F5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040173001 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.8e-23
Identity = 94/273 (34.43%), Postives = 141/273 (51.65%), Query Frame = 1 

Query: 59  PTANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLER 118
           PT   + +E A + L    +++      RD    +I  + D   CKSIL+EY  KM  E+
Sbjct: 100 PTRKSAEQEAAKIALENIQQKM------RDDGCPII--REDTTFCKSILNEYAVKMHQEK 159

Query: 119 PIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQK 178
           P Y T    G +  F STLVF+GV YT D GR KKEAEQLAARA ILS+  D+ +  S  
Sbjct: 160 PAYNTIQPGGLIPVFVSTLVFNGVSYTGDKGRNKKEAEQLAARAIILSI-LDSADSASAT 219

Query: 179 ALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMV 238
            + +II SK + +A + K++D+N       S+  NT E   + +++GK  +         
Sbjct: 220 LMSEIIKSKSKLYAAVNKIRDANSIHSAVNSV--NTWEDPGVLLSKGKVAQVGKTTASF- 279

Query: 239 CGAISEACPTS----QFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKS 298
             +++E+  T      F P F   K + S+ ++  PI FV   L +P+ + +T G KR  
Sbjct: 280 -PSLAESAKTHATHVPFHP-FKKPKLETSTEVVAPPIVFVPPVLGQPL-HSSTSGVKRNR 339

Query: 299 KNKRKAR--KKLCMENRVATETSQTAAPCSVAR 326
           KNK+KA+   ++  +  VA         CSVA+
Sbjct: 340 KNKKKAKVGVQIGPQIPVAVGPLNQIPSCSVAQ 357

[Close]
BLAST of Csa3G345370 vs. TrEMBL
Match: A0A068U2F5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040173001 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.5e-01
Identity = 28/72 (38.89%), Postives = 45/72 (62.50%), Query Frame = 1 

Query: 101 MLCKSILSEYTDKMGLERPIYTTKHNQG--SVAFFQSTLVFDGVVYTSDLG-RTKKEAEQ 160
           ++ K+ L EYT K  L+ P+YTT  N+G      F++T++ DG+ YTS     T+K AEQ
Sbjct: 49  LMYKNRLQEYTQKSSLQLPVYTT-INEGVQHAPRFRATVLVDGMYYTSQGNYPTRKSAEQ 108

Query: 161 LAARAAILSLHE 170
            AA+ A+ ++ +
Sbjct: 109 EAAKIALENIQQ 119


HSP 2 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 72/204 (35.29%), Postives = 111/204 (54.41%), Query Frame = 1 

Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + D + CKSIL+E+  KM +E P Y T  ++G +  F S+LVF+ V Y+   GR KKEAE
Sbjct: 110 REDTVFCKSILNEFAVKMNMEMPSYNTIQSEGLIPLFVSSLVFNDVTYSGKTGRNKKEAE 169

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAA+LSL +D+   +    L +II SK + +  L KVKDS+ S         NT  
Sbjct: 170 QLAARAALLSLLDDS---RYGTFLSEIIKSKAKLYVALNKVKDSSISHIGTTPAGANT-- 229

Query: 217 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPE--FSATKPDGSSPLMRLPIEFV 276
               ++++ +E++ AV+   +    I  +   ++ +P   F   K +  S  + LPI FV
Sbjct: 230 ----SIHKNEEIETAVVTNSVPNTVILPSSSGAK-RPHHVFKIEKLEEGSEHIDLPIVFV 289

Query: 277 RSTLEEPVGYHATIGSKRKSKNKR 299
            + + E +    +   KR+ K KR
Sbjct: 290 PTAVAESLPVGESSSRKRRRKKKR 303

[Close]
BLAST of Csa3G345370 vs. TrEMBL
Match: A0A067KA91_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 68/162 (41.98%), Postives = 89/162 (54.94%), Query Frame = 1 

Query: 99  DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQL 158
           D + CKSIL EY  KM +E+P+Y T   QG    F STLVF+GV YT D GRTKKEAEQL
Sbjct: 137 DKVFCKSILYEYAVKMQIEKPMYNTFQPQGLFPIFGSTLVFNGVTYTGDTGRTKKEAEQL 196

Query: 159 AARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERV 218
           AAR+AILSL     NP S   + +II SK + +A L K K+S            +    +
Sbjct: 197 AARSAILSL---MGNPVSSAIISEIIKSKSKLYASLYKFKESQLDAQLDSQSQLDAQHGI 256

Query: 219 AMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKP 261
              VN+ KE +  ++   +   AI +  PTS      ++T P
Sbjct: 257 VPAVNKNKEAEVVLVGNNVPLRAIPQ--PTSPQPHAQNSTVP 293

[Close]
BLAST of Csa3G345370 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-08
Identity = 30/78 (38.46%), Postives = 40/78 (51.28%), Query Frame = 1 

Query: 98  HDLMLCKSILSEYTDKMGLERPIYTTKHNQ--GSVAFFQSTLVFDGVVYTSDLGRTKKEA 157
           H+  LCK++L EY  KM    P+Y  +  +  G V  F  T+   G+ YT    RTKK+A
Sbjct: 97  HETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDA 156

Query: 158 EQLAARAAILSLHEDATN 174
           E  A R A+L++  D  N
Sbjct: 157 EISAGRTALLAIQSDTKN 174


HSP 2 Score: 42.4 bits (98), Expect = 6.4e-04
Identity = 28/66 (42.42%), Postives = 32/66 (48.48%), Query Frame = 1 

Query: 104 KSILSEYTDKMGLERPIYT-TKHNQGSVAFFQSTLVFDGVVYTSDLG-RTKKEAEQLAAR 163
           KS L EY  K  L  P+Y   K      + FQST++ DGV Y S  G   +K AEQ AA 
Sbjct: 17  KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 76

Query: 164 AAILSL 168
            A+  L
Sbjct: 77  VALREL 82

[Close]
BLAST of Csa3G345370 vs. NCBI nr
Match: gi|700202703|gb|KGN57836.1| (hypothetical protein Csa_3G345370 [Cucumis sativus])

HSP 1 Score: 647.9 bits (1670), Expect = 9.5e-183
Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 1 

Query: 1   MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVITEVANEADRSRSCEPT 60
           MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVITEVANEADRSRSCEPT
Sbjct: 1   MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVITEVANEADRSRSCEPT 60

Query: 61  ANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLERPI 120
           ANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLERPI
Sbjct: 61  ANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLERPI 120

Query: 121 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 180
           YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL
Sbjct: 121 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 180

Query: 181 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 240
           GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG
Sbjct: 181 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 240

Query: 241 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 300
           AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA
Sbjct: 241 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 300

Query: 301 RKKLCMENRVATETSQTAAPCSVAR 326
           RKKLCMENRVATETSQTAAPCSVAR
Sbjct: 301 RKKLCMENRVATETSQTAAPCSVAR 325

[Close]
BLAST of Csa3G345370 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 449.5 bits (1155), Expect = 4.9e-123
Identity = 227/229 (99.13%), Postives = 228/229 (99.56%), Query Frame = 1 

Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE
Sbjct: 157 REDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 216

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE
Sbjct: 217 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 276

Query: 217 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 276
           RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS
Sbjct: 277 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 336

Query: 277 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 326
           TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR
Sbjct: 337 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 385

[Close]
BLAST of Csa3G345370 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 443.0 bits (1138), Expect = 4.6e-121
Identity = 226/229 (98.69%), Postives = 227/229 (99.13%), Query Frame = 1 

Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE
Sbjct: 157 REDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 216

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAAILSLH DATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE
Sbjct: 217 QLAARAAILSLH-DATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 276

Query: 217 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 276
           RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS
Sbjct: 277 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 336

Query: 277 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 326
           TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR
Sbjct: 337 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 384

[Close]
BLAST of Csa3G345370 vs. NCBI nr
Match: gi|659114468|ref|XP_008457066.1| (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 386.7 bits (992), Expect = 3.9e-104
Identity = 197/229 (86.03%), Postives = 210/229 (91.70%), Query Frame = 1 

Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + DL+LCKSILSEYTDKMGLERPIYTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAE
Sbjct: 157 REDLILCKSILSEYTDKMGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAE 216

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAAILSLHEDA N KSQK L DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVE
Sbjct: 217 QLAARAAILSLHEDAINIKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVE 276

Query: 217 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 276
           RVAMTVNE K +KDAV D G+VCGAISEACPTS F+PEFS+TKP+GSSPL+RLPIEFV S
Sbjct: 277 RVAMTVNEDKNVKDAVSDSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPS 336

Query: 277 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 326
           TLE PVG HAT GSKR+SKNKRKARKKLCMEN VATETSQTAAPCSVA+
Sbjct: 337 TLEVPVGDHATTGSKRRSKNKRKARKKLCMENGVATETSQTAAPCSVAQ 385

[Close]
BLAST of Csa3G345370 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 380.2 bits (975), Expect = 3.7e-102
Identity = 196/229 (85.59%), Postives = 209/229 (91.27%), Query Frame = 1 

Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + DL+LCKSILSEYTDKMGLERPIYTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAE
Sbjct: 157 REDLILCKSILSEYTDKMGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAE 216

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAAILSLH DA N KSQK L DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVE
Sbjct: 217 QLAARAAILSLH-DAINIKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVE 276

Query: 217 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 276
           RVAMTVNE K +KDAV D G+VCGAISEACPTS F+PEFS+TKP+GSSPL+RLPIEFV S
Sbjct: 277 RVAMTVNEDKNVKDAVSDSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPS 336

Query: 277 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 326
           TLE PVG HAT GSKR+SKNKRKARKKLCMEN VATETSQTAAPCSVA+
Sbjct: 337 TLEVPVGDHATTGSKRRSKNKRKARKKLCMENGVATETSQTAAPCSVAQ 384

The following BLAST results are available for this feature:
BLAST of Csa3G345370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DRB4_ORYSJ1.8e-0837.74Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE... [more]
DRB1_ARATH7.6e-0738.46Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1[more]
BLAST of Csa3G345370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCN7_CUCSA6.6e-183100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1[more]
D7TSR3_VITVI8.4e-2939.33Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=... [more]
A0A068U2F5_COFCA1.8e-2334.43Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040173001 PE=4 SV=1[more]
A0A068U2F5_COFCA1.5e-0138.89Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040173001 PE=4 SV=1[more]
A0A067KA91_JATCU2.5e-2041.98Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1[more]
BLAST of Csa3G345370 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G09700.14.3e-0838.46 dsRNA-binding domain-like superfamily protein[more]
BLAST of Csa3G345370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202703|gb|KGN57836.1|9.5e-183100.00hypothetical protein Csa_3G345370 [Cucumis sativus][more]
gi|449464150|ref|XP_004149792.1|4.9e-12399.13PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus][more]
gi|778680845|ref|XP_011651405.1|4.6e-12198.69PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus][more]
gi|659114468|ref|XP_008457066.1|3.9e-10486.03PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo][more]
gi|659114470|ref|XP_008457067.1|3.7e-10285.59PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003725 double-stranded RNA binding
molecular_function GO:0003723 RNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU117935cucumber EST collection version 3.0transcribed_cluster
CU129158cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G345370.1Csa3G345370.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU117935CU117935transcribed_cluster
CU129158CU129158transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainGENE3DG3DSA:3.30.160.20coord: 104..173
score: 5.9
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 104..166
score: 6.4
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 103..168
score: 1.
IPR014720Double-stranded RNA-binding domainPROFILEPS50137DS_RBDcoord: 133..169
score: 9
NoneNo IPR availablePANTHERPTHR11207RIBONUCLEASE IIIcoord: 99..204
score: 7.0
NoneNo IPR availablePANTHERPTHR11207:SF8SUBFAMILY NOT NAMEDcoord: 99..204
score: 7.0
NoneNo IPR availableunknownSSF54768dsRNA-binding domain-likecoord: 98..167
score: 1.98

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G345370Cla013177Watermelon (97103) v1cuwmB245
Csa3G345370ClCG05G011010Watermelon (Charleston Gray)cuwcgB233
Csa3G345370Cla97C05G093280Watermelon (97103) v2cuwmbB218
Csa3G345370CSPI03G21780Wild cucumber (PI 183967)cpicuB120
Csa3G345370Cucsa.012600Cucumber (Gy14) v1cgycuB290
Csa3G345370CsGy3G020970Cucumber (Gy14) v2cgybcuB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G345370Wax gourdcuwgoB299
Csa3G345370Cucurbita maxima (Rimu)cmacuB242
Csa3G345370Cucurbita maxima (Rimu)cmacuB455
Csa3G345370Cucurbita moschata (Rifu)cmocuB229
Csa3G345370Cucurbita moschata (Rifu)cmocuB442
Csa3G345370Melon (DHL92) v3.5.1cumeB246
Csa3G345370Cucurbita pepo (Zucchini)cpecuB547
Csa3G345370Cucurbita pepo (Zucchini)cpecuB600
Csa3G345370Bottle gourd (USVL1VR-Ls)culsiB212
Csa3G345370Melon (DHL92) v3.6.1cumedB239
Csa3G345370Silver-seed gourdcarcuB0780