CSPI03G21780 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21780
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Double-stranded RNA binding protein, putative
Location	Chr3 : 18187310 .. 18191960 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAATTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCACAACATGATTGGGAAGAAACATGTCACTTCAACAGCCCCCTATTTCTTTGGCAAATATCTTTCTTATGAATCTTATTCACCTAGACATAAACACTATTTGCTTAATGTGACTGTTTATGAACCTACCTTCTGTCACCCAGCTGTAAAGTTTCAGAATTGGAGAGATGATATGGTGAAGAAATAAATGCAATGGAACGTAACAAGACTTGGATAGTGACTTCATCGCCCAAAAGTCAACACATACTAGGAAGCAAATGGGTGTATAAAGTCAAATATCTTCCCGGTGGAACTGTTGATCGGTACAAGGTGCGCCTTATTGCTTAAGGCTATTATCAACAAGAAGGCATGGACTTTTTTGACACATTTCCTTCCGTGGCCTTTGTCACAGTAAAGGTATTTCTATCCTTAGTGACCTCCTTTAATTGGCAATTTATTCAAATGGATATTACCAATGCCTTTTTAAATGGAGACTTATTTGAAGAGATTTATATGTTCTTACCCATGAGATACAAGACAACTATAATACCAAATAAGGGGGAGAAGCTCGTTTGTCGATTGAATAAGTCAATATATGGCCTCAAACAAGCCTTTAAACAATGGTTTGTGAAGTTTTCTTCTGTATTGTCTACACATGGCTTCATCCAGTCAAAGTCCGACTAGGCTATATTCGTGGAAGTGGTGAAACCTTTGTTGCATTGTTAGTATAGATGGATAACATATTACCAATTGGACCTTCCCCGGATGAGATCAATGTTATCAAAAAGATCCTCAAAAGCCATTTTAAAGTTAAGGACTTGGGACAAACCAAATATTTCCTAGGATTAGAGTTATCTCGATCCAAACAAGGTTTGTTTCTATCACAATGAAAATATTCCCTTCAAATCCTTGAAGACACTGAATACCTTGCTGCGAAGCTTGCTTCATTACCTATGGATCCAAACATCAAGCTCTCAAAAGCCAACTAATACTCATCTGAATGCTGCTCATCACTTGTTGAAATATTTAAAACGCCAGGGCAAGGCATTTTGATTAAGCCAACTCACTAGTTTCATCTCAAGGCTTATGTTGACACTGATTGGGGGGCATGCCTTGACACTCGACAATCCATTTCAGGCTATTGTATTTTCTTAGGGAACTCATTAGTCTCATGGAAATCGAAGAAGCAAGTCACTGTTTCGAGATCATTTGCAGAGGCAGAATATATAGAGCCTTGGCATCTGTAATAAGTGAACTTATATGGATTTCTCAACTTCTAATTGATCTACACGTTCAACATATGTTACCAACAACTGTGTTTTGTGACAACCAAGCTGCCGTTGCTATTGCATCCCATCCAATCCTACCTTCTATTAAACCACCAATTCATCCAAAAGCTTAAGCTGGTGGTTGAACGCAAAATTTAATTATATATCACCAACACTCCCCCTCACTTGTGGGCTTGAAATATCTGAAAGGCCCAACAAGTGGAATCAATTTTACCTCCCTTTTGGGTTTGAAATATTTGAAAGGCCCAACAAGTGGAAATTGATTTTAATTGGGGAGGAAACGACAATGCAGGGGCTTGAACACAGGACCTCCCTGGACCACCTGCTCTGATACCATATTAAACCACCAATTCATCCAAAAGCTTAAGCTGGTGGTTGAAGGCAAATTTAATTATATATCACCAACACCATGATCAGACGAAGCACATAAAAATCGATTGCCACTTTGTAAGAGACAAGATCATTGATGGCTTCTTGAAAGTATTGTCAATTCGATTACCCTTACAACTAGCTGACATGTTTACCGAGTCATTATCGGCTGTTTTGTCAAAACTTTTTGTCAAGTTGGGTGTCCTTGATGTCCATTTCCAACTGAAGAGTATTAAAATGATGCCTTGTAAATAATTGATTCTTGTTATTAATTGTCGTTAATCTTGTAGGATTGGTTTCTTTGTTATCAAGTGATTTTTTTTTTGAAAAGGATACGAGTCTCAATATTATTAGTATAAATAAAGAGACAAAGCTCAATGTACATGAGGGTTATACAAAGAGCAATAGGGGAAGGAGGATTAGCAGGCACATCCGAGCATCTCAAGTAGGTTGACACCCCCTTAGCGCCCTTAACACATCCAAAAAGCGACAATACAAGATCAAACAAAAAACCACAAATACAAAGCCAAAAAAAAATGATAAAAAGAATCTGTCCAAAGCAAAATCATAAATAAAAGGCAGCATGCTGAGAACAAAGAAGAATAAGCCTTGATTGATTGAACAAAAAGCTGTTTGAAGCATGGGGCTGATCAGGAAGTCCTGATGATCAAGGACTTCAAAGTGGGGAGGCTGTGAAGGCTGGCCAATATAACACAATATCCTACGTCAAAGTTCTTTTTCATTACTTTTTCTAAAAATTCTCAATCTACTCTGTCAAAGGCCATTTCAAGGTCTAATTTAGTGATCCATCCTTTCTTTTTTCGGATTCTATAGTCCTCCACAGCTTCGTTTGCTATTAAAATAGGGTCCAAGATTTGACGCCCTTCCAGAAGGCCACATTATGATGGAGCAATAATACTTGGCATTACTTTCTTTAATCTTTCTGCAAGAACCTTTGCAAACAACTTTTAAATTAATGTTGAAACTGATCCAGCAGAGAACGTGAAACTGACCTTCCTTCTCTTGACCATGAATGAGAAGTAACTCCATTAAGAAATAACCCCAATATTCAATGTTTATTACCCTTGCACTTTGAAAACGTTGTTAAGTACTTGCACTTTACCAATAATGAGGTCAAATATTGACATGTTGAAAAAAAACGCATGTATTTGGATGTTGAAGTACTTTTTAATTTTATTGGTTTCATATCTCTATACAAACTAACTTCATATCTCATATACAAACTATGTCCCCTGTTCTTTCTTCAGGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGGTATTTGATTGTTGTAAACTAGTACTAAATTATTTCAAAATATTTGGTGCCTTGAATAAGATTATTATTTTTTTTAAAAAAATAACAATGAGGATAACAATTATTATTATTTTGTAGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGTAATTTTCTTTTCATGAAACTTCATCCAACGTCGTTGTAATTATAAATGTCGATAATTTACAGTTTATAACTCCACTGCACATTTATTTTATGGTTTTTAGGGTATTATATAGTGGTTTACAGTAAACACCAGTCTTGTTACAACTAGAGCTATTCAATTTGCATGTTCATGGAGTTAAGAAAATCAATCTAAATTTCTGTGGTAAGACTACTACGCTGCAATTTATTTCAATGAAAAAGTGAAGTGATTGATATCCTTTCAAGGTAAGGTGTGGATTCAAATCATGATGGTAGTCATCTAAGATACTAAAATATCTTACAACTTTCTTAATACTCAATGTAGTATCGAGTAAGATTTGATAGTTGTGCCTATGATTAATATAGATTTATTTAACTTATTCTGGTGCCCACAGTTGTTAAAAATGCACAAAAACTGGGGGGCCTTTGTTTTGTCTACAATATGATGGTATCATATGGATTGTAAATGAATTCAAATGAGTGATTAGTTGGAGGGAAGTTACTCTTGTTTTATTGGGCTATATGATAGGAGAGATGGCATGTCCCCTCAAGAGTTCTGCTATTTCTATGTTCTACTTGAATTATATTAATTTAGGCTCCATATGTGTAAGTTATTTCGATCGTATAACTAAATCTCCTTTTGTTAAAAATGACCAGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGA

mRNA sequence

ATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAATTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCACAACATGATTGGGAAGAAACATGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGA

Coding sequence (CDS)

ATGTCTCAGAATAATGCAACTACTTCTACTGATGGTGTTGATACAAACTGTTACGAGGAGCAGAACACAGAACTGAATGACAATGAAATACTGAATGATGCTGCAATAGAACATACTGACAATGTTGTTATAATTGAAGTTGCAAATGAAGCCGACCGTAGTAGAAGCTGTGAGCCTACTGCAAATGATAGCAGCCGTGAACCTGCACCTGTCACACTCCATAGATCATCTCGGCAGTTATGTCTACCTTCATATCTTAGGGATTTCCATCACAACATGATTGGGAAGAAACATGATTTGATGTTATGCAAGTCCATTTTGTCTGAATATACTGACAAAATGGGTTTGGAAAGACCTATATACACAACTAAACACAATCAAGGCTCGGTTGCATTCTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTAGTGATCTTGGTAGGACTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCAGCTATTCTTTCACTTCATGAAGATGCAACGAATCCTAAATCACAAAAAGCTCTTGGGGACATCATTGCATCTAAAGTCAGATTCCATGCAATGTTGCAAAAGGTTAAAGATTCAAATTTTTCTCAATTTCAACCGAAATCCATGCCTGAAAATACAGTGGAACGTGTTGCAATGACAGTTAATGAAGGTAAAGAACTTAAAGATGCTGTTTTAGACGGTGGAGTGGTATGTGGTGCAATTTCAGAGGCTTGTCCAACTTCTCAATTTCAACCTGAATTTAGTGCAACAAAACCGGATGGATCATCCCCTCTAATGAGACTGCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGCTATCACGCAACAATTGGGTCTAAAAGGAAATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATGGAGAACCGGGTGGCTACCGAAACAAGTCAAACTGCTGCTCCTTGCTCCGTAGCTCGATGA

Homology

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BLAST of CSPI03G21780 vs. Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-08
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1


Query: 99  DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQL 158
           D++  KSIL EYT K   ++P Y+    +GSV  + S++ F G  YT    R KK+AEQ 
Sbjct: 125 DVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTPYVSSVSFAGHTYTGGAARNKKDAEQK 184

Query: 159 AARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQ 205
           AARAA+ SL   ATN  S   +  I+ SK +   +++ +  S +++
Sbjct: 185 AARAAVKSLL--ATNYTS---MAKIVRSKEK---LIRAISPSGYNK 222

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BLAST of CSPI03G21780 vs. Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-07
Identity = 30/78 (38.46%), Postives = 42/78 (53.85%), Query Frame = 1


Query: 98  HDLMLCKSILSEYTDKMGLERPIYTTKHNQ--GSVAFFQSTLVFDGVVYTSDLGRTKKEA 157
           H+  LCK++L EY  KM    P+Y  +  +  G V  F  T+   G+ YT    RTKK+A
Sbjct: 97  HETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDA 156

Query: 158 EQLAARAAILSLHEDATN 174
           E  A R A+L++  D  N
Sbjct: 157 EISAGRTALLAIQSDTKN 174

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BLAST of CSPI03G21780 vs. TrEMBL
Match: A0A0A0LCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 7.1e-177
Identity = 321/325 (98.77%), Postives = 322/325 (99.08%), Query Frame = 1


Query: 1   MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVIIEVANEADRSRSCEPT 60
           MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVI EVANEADRSRSCEPT
Sbjct: 1   MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVITEVANEADRSRSCEPT 60

Query: 61  ANDSSREPAPVTLHRSSRQLCLPSYLRDFHHNMIGKKHDLMLCKSILSEYTDKMGLERPI 120
           ANDSSREPAPVTLHRSSRQLCLPSYLRDFH NMIGKKHDLMLCKSILSEYTDKMGLERPI
Sbjct: 61  ANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLERPI 120

Query: 121 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 180
           YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL
Sbjct: 121 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 180

Query: 181 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCG 240
           GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGG+VCG
Sbjct: 181 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 240

Query: 241 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVPSTLEEPVGYHATIGSKRKSKNKRKA 300
           AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFV STLEEPVGYHATIGSKRKSKNKRKA
Sbjct: 241 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 300

Query: 301 RKKLCMENRVATETSQTAAPCSVAR 326
           RKKLCMENRVATETSQTAAPCSVAR
Sbjct: 301 RKKLCMENRVATETSQTAAPCSVAR 325

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BLAST of CSPI03G21780 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.8e-29
Identity = 96/239 (40.17%), Postives = 130/239 (54.39%), Query Frame = 1


Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + D + CKSIL+E+  KM LE+P YTT   +G +  F S+LVF+GV YT D GR KKEAE
Sbjct: 102 REDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAE 161

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAAR  ILS+     N  S   L +II SKV+ +A L +VKD ++       +P     
Sbjct: 162 QLAARTVILSI---LGNSGSGTLLSEIIKSKVKLYAALHRVKDPSY--IHTGILPIGLTS 221

Query: 217 RVAMTVNEGKELK-----DAVLDGGV---VCGAISEACPTSQFQPEFSATKPDGSSPLMR 276
            +     +GKE++     D +L   V   + G +     T     E    KP+ SS ++ 
Sbjct: 222 GIPPC--KGKEVEVAPGTDQLLPTAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSSEVIA 281

Query: 277 LPIEFVPSTLEEPVGYHATIGSKRKSKNKRKARKKLCMENR--VATETSQTAAPCSVAR 326
            PI FVPS  E+P+    T G KR  KNK+KA KKL  + +  VA      A+PCSVA+
Sbjct: 282 PPISFVPSVFEQPLVVSPTTGRKRNRKNKKKANKKLRTDAQLPVAVLPLNQASPCSVAQ 333

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BLAST of CSPI03G21780 vs. TrEMBL
Match: A0A068U2F5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040173001 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.1e-23
Identity = 95/273 (34.80%), Postives = 142/273 (52.01%), Query Frame = 1


Query: 59  PTANDSSREPAPVTLHRSSRQLCLPSYLRDFHHNMIGKKHDLMLCKSILSEYTDKMGLER 118
           PT   + +E A + L    +++      RD    +I  + D   CKSIL+EY  KM  E+
Sbjct: 100 PTRKSAEQEAAKIALENIQQKM------RDDGCPII--REDTTFCKSILNEYAVKMHQEK 159

Query: 119 PIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQK 178
           P Y T    G +  F STLVF+GV YT D GR KKEAEQLAARA ILS+  D+ +  S  
Sbjct: 160 PAYNTIQPGGLIPVFVSTLVFNGVSYTGDKGRNKKEAEQLAARAIILSIL-DSADSASAT 219

Query: 179 ALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVV 238
            + +II SK + +A + K++D+N       S+  NT E   + +++GK  +         
Sbjct: 220 LMSEIIKSKSKLYAAVNKIRDANSIHSAVNSV--NTWEDPGVLLSKGKVAQVGKTTASF- 279

Query: 239 CGAISEACPTS----QFQPEFSATKPDGSSPLMRLPIEFVPSTLEEPVGYHATIGSKRKS 298
             +++E+  T      F P F   K + S+ ++  PI FVP  L +P+ + +T G KR  
Sbjct: 280 -PSLAESAKTHATHVPFHP-FKKPKLETSTEVVAPPIVFVPPVLGQPL-HSSTSGVKRNR 339

Query: 299 KNKRKAR--KKLCMENRVATETSQTAAPCSVAR 326
           KNK+KA+   ++  +  VA         CSVA+
Sbjct: 340 KNKKKAKVGVQIGPQIPVAVGPLNQIPSCSVAQ 357

[Close]

BLAST of CSPI03G21780 vs. TrEMBL
Match: A0A061EHS9_THECC (DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TCM_019209 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.7e-21
Identity = 74/204 (36.27%), Postives = 112/204 (54.90%), Query Frame = 1


Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + D + CKSIL+E+  KM +E P Y T  ++G +  F S+LVF+ V Y+   GR KKEAE
Sbjct: 110 REDTVFCKSILNEFAVKMNMEMPSYNTIQSEGLIPLFVSSLVFNDVTYSGKTGRNKKEAE 169

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAA+LSL +D+   +    L +II SK + +  L KVKDS+ S         NT  
Sbjct: 170 QLAARAALLSLLDDS---RYGTFLSEIIKSKAKLYVALNKVKDSSISHIGTTPAGANT-- 229

Query: 217 RVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPE--FSATKPDGSSPLMRLPIEFV 276
               ++++ +E++ AV+   V    I  +   ++ +P   F   K +  S  + LPI FV
Sbjct: 230 ----SIHKNEEIETAVVTNSVPNTVILPSSSGAK-RPHHVFKIEKLEEGSEHIDLPIVFV 289

Query: 277 PSTLEEPVGYHATIGSKRKSKNKR 299
           P+ + E +    +   KR+ K KR
Sbjct: 290 PTAVAESLPVGESSSRKRRRKKKR 303

[Close]

BLAST of CSPI03G21780 vs. TrEMBL
Match: A0A067KA91_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-20
Identity = 69/162 (42.59%), Postives = 89/162 (54.94%), Query Frame = 1


Query: 99  DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQL 158
           D + CKSIL EY  KM +E+P+Y T   QG    F STLVF+GV YT D GRTKKEAEQL
Sbjct: 137 DKVFCKSILYEYAVKMQIEKPMYNTFQPQGLFPIFGSTLVFNGVTYTGDTGRTKKEAEQL 196

Query: 159 AARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERV 218
           AAR+AILSL     NP S   + +II SK + +A L K K+S            +    +
Sbjct: 197 AARSAILSL---MGNPVSSAIISEIIKSKSKLYASLYKFKESQLDAQLDSQSQLDAQHGI 256

Query: 219 AMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPEFSATKP 261
              VN+ KE +  ++   V   AI +  PTS      ++T P
Sbjct: 257 VPAVNKNKEAEVVLVGNNVPLRAIPQ--PTSPQPHAQNSTVP 293

[Close]

BLAST of CSPI03G21780 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-08
Identity = 30/78 (38.46%), Postives = 42/78 (53.85%), Query Frame = 1


Query: 98  HDLMLCKSILSEYTDKMGLERPIYTTKHNQ--GSVAFFQSTLVFDGVVYTSDLGRTKKEA 157
           H+  LCK++L EY  KM    P+Y  +  +  G V  F  T+   G+ YT    RTKK+A
Sbjct: 97  HETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDA 156

Query: 158 EQLAARAAILSLHEDATN 174
           E  A R A+L++  D  N
Sbjct: 157 EISAGRTALLAIQSDTKN 174

[Close]

BLAST of CSPI03G21780 vs. NCBI nr
Match: gi|700202703|gb|KGN57836.1| (hypothetical protein Csa_3G345370 [Cucumis sativus])

HSP 1 Score: 627.9 bits (1618), Expect = 1.0e-176
Identity = 321/325 (98.77%), Postives = 322/325 (99.08%), Query Frame = 1


Query: 1   MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVIIEVANEADRSRSCEPT 60
           MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVI EVANEADRSRSCEPT
Sbjct: 1   MSQNNATTSTDGVDTNCYEEQNTELNDNEILNDAAIEHTDNVVITEVANEADRSRSCEPT 60

Query: 61  ANDSSREPAPVTLHRSSRQLCLPSYLRDFHHNMIGKKHDLMLCKSILSEYTDKMGLERPI 120
           ANDSSREPAPVTLHRSSRQLCLPSYLRDFH NMIGKKHDLMLCKSILSEYTDKMGLERPI
Sbjct: 61  ANDSSREPAPVTLHRSSRQLCLPSYLRDFHRNMIGKKHDLMLCKSILSEYTDKMGLERPI 120

Query: 121 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 180
           YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL
Sbjct: 121 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 180

Query: 181 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGVVCG 240
           GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGG+VCG
Sbjct: 181 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 240

Query: 241 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVPSTLEEPVGYHATIGSKRKSKNKRKA 300
           AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFV STLEEPVGYHATIGSKRKSKNKRKA
Sbjct: 241 AISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 300

Query: 301 RKKLCMENRVATETSQTAAPCSVAR 326
           RKKLCMENRVATETSQTAAPCSVAR
Sbjct: 301 RKKLCMENRVATETSQTAAPCSVAR 325

[Close]

BLAST of CSPI03G21780 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 441.8 bits (1135), Expect = 1.0e-120
Identity = 225/229 (98.25%), Postives = 227/229 (99.13%), Query Frame = 1


Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE
Sbjct: 157 REDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 216

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE
Sbjct: 217 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 276

Query: 217 RVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVPS 276
           RVAMTVNEGKELKDAVLDGG+VCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFV S
Sbjct: 277 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 336

Query: 277 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 326
           TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR
Sbjct: 337 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 385

[Close]

BLAST of CSPI03G21780 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 435.3 bits (1118), Expect = 9.7e-119
Identity = 224/229 (97.82%), Postives = 226/229 (98.69%), Query Frame = 1


Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE
Sbjct: 157 REDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 216

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAAILSLH DATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE
Sbjct: 217 QLAARAAILSLH-DATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 276

Query: 217 RVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVPS 276
           RVAMTVNEGKELKDAVLDGG+VCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFV S
Sbjct: 277 RVAMTVNEGKELKDAVLDGGMVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVRS 336

Query: 277 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 326
           TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR
Sbjct: 337 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 384

[Close]

BLAST of CSPI03G21780 vs. NCBI nr
Match: gi|659114468|ref|XP_008457066.1| (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 387.9 bits (995), Expect = 1.8e-104
Identity = 199/229 (86.90%), Postives = 211/229 (92.14%), Query Frame = 1


Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + DL+LCKSILSEYTDKMGLERPIYTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAE
Sbjct: 157 REDLILCKSILSEYTDKMGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAE 216

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAAILSLHEDA N KSQK L DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVE
Sbjct: 217 QLAARAAILSLHEDAINIKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVE 276

Query: 217 RVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVPS 276
           RVAMTVNE K +KDAV D GVVCGAISEACPTS F+PEFS+TKP+GSSPL+RLPIEFVPS
Sbjct: 277 RVAMTVNEDKNVKDAVSDSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPS 336

Query: 277 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 326
           TLE PVG HAT GSKR+SKNKRKARKKLCMEN VATETSQTAAPCSVA+
Sbjct: 337 TLEVPVGDHATTGSKRRSKNKRKARKKLCMENGVATETSQTAAPCSVAQ 385

[Close]

BLAST of CSPI03G21780 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 381.3 bits (978), Expect = 1.7e-102
Identity = 198/229 (86.46%), Postives = 210/229 (91.70%), Query Frame = 1


Query: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156
           + DL+LCKSILSEYTDKMGLERPIYTTKH++GSV  FQSTLVFDGVVYTSDL RTKKEAE
Sbjct: 157 REDLILCKSILSEYTDKMGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAE 216

Query: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216
           QLAARAAILSLH DA N KSQK L DIIASKVRFHAMLQKVKDS+FSQ QPKSMPENTVE
Sbjct: 217 QLAARAAILSLH-DAINIKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVE 276

Query: 217 RVAMTVNEGKELKDAVLDGGVVCGAISEACPTSQFQPEFSATKPDGSSPLMRLPIEFVPS 276
           RVAMTVNE K +KDAV D GVVCGAISEACPTS F+PEFS+TKP+GSSPL+RLPIEFVPS
Sbjct: 277 RVAMTVNEDKNVKDAVSDSGVVCGAISEACPTSLFRPEFSSTKPEGSSPLVRLPIEFVPS 336

Query: 277 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTAAPCSVAR 326
           TLE PVG HAT GSKR+SKNKRKARKKLCMEN VATETSQTAAPCSVA+
Sbjct: 337 TLEVPVGDHATTGSKRRSKNKRKARKKLCMENGVATETSQTAAPCSVAQ 384

The following BLAST results are available for this feature:

BLAST of CSPI03G21780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRB4_ORYSJ	1.1e-08	37.74	Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE...	[more]
DRB1_ARATH	3.4e-07	38.46	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1	[more]

BLAST of CSPI03G21780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCN7_CUCSA	7.1e-177	98.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1	[more]
D7TSR3_VITVI	3.8e-29	40.17	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=...	[more]
A0A068U2F5_COFCA	4.1e-23	34.80	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040173001 PE=4 SV=1	[more]
A0A061EHS9_THECC	1.7e-21	36.27	DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TC...	[more]
A0A067KA91_JATCU	1.1e-20	42.59	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1	[more]

BLAST of CSPI03G21780 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09700.1	1.9e-08	38.46	dsRNA-binding domain-like superfamily protein	[more]

BLAST of CSPI03G21780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202703\|gb\|KGN57836.1\|	1.0e-176	98.77	hypothetical protein Csa_3G345370 [Cucumis sativus]	[more]
gi\|449464150\|ref\|XP_004149792.1\|	1.0e-120	98.25	PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus]	[more]
gi\|778680845\|ref\|XP_011651405.1\|	9.7e-119	97.82	PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus]	[more]
gi\|659114468\|ref\|XP_008457066.1\|	1.8e-104	86.90	PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo]	[more]
gi\|659114470\|ref\|XP_008457067.1\|	1.7e-102	86.46	PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21780.1	CSPI03G21780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 104..173 score: 5.7
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 104..166 score: 6.4
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 103..168 score: 1.
IPR014720	Double-stranded RNA-binding domain	PROFILE	PS50137	DS_RBD	coord: 133..169 score: 9
None	No IPR available	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 99..204 score: 7.0
None	No IPR available	PANTHER	PTHR11207:SF8	SUBFAMILY NOT NAMED	coord: 99..204 score: 7.0
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 98..167 score: 1.82

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G21780	Cla013177	Watermelon (97103) v1	cpiwmB245
CSPI03G21780	Csa3G345370	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21780	ClCG05G011010	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21780	CsaV3_3G021570	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21780	Cla97C05G093280	Watermelon (97103) v2	cpiwmbB224
CSPI03G21780	Cucsa.012600	Cucumber (Gy14) v1	cgycpiB299
CSPI03G21780	CsGy3G020970	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21780	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G21780	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21780	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21780	Cucurbita pepo (Zucchini)	cpecpiB552
CSPI03G21780	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G21780	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G21780	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21780	Silver-seed gourd	carcpiB0798
CSPI03G21780	Wax gourd	cpiwgoB299
CSPI03G21780	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G21780	Cucurbita maxima (Rimu)	cmacpiB458