Lsi05G003100 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003100
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Double-stranded RNA-binding 4
Location	chr05 : 3976304 .. 3983402 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAACCCTCGCCTTCCGTTCACAGTCGAGCGCGAAAATATCCCGACATTCATTCATTCATTGATCGCCATTGGCTGACTGTTCCCATCCCATTTCACCAAATTCTTCTCTTCGAATTCCATTACCCTCGATAACAGTGGATGATGATGGAAGAATCCGGTACGGTTGAAGCAGATGCGCCGCAACAATCTTCAGTTCCGACTGTTGTTTCGCCGGACTCAGCTCCGACTGTTGTTCCGCCGGACTCAGTTCCGACTGTTGTTTCGCCGGACTCAGCTCCGACTGTTGTTCCGCCGGACTCAGTTCCGACTGTTGTTCCGCCGGACTCAATTCCGACTGTTGTTCCGCCTCCTATTCCGGTGGAAAACTCCGATACTCCTCAGCCTCAAGCAGATATTCATCCTCCATCTGTGCTACCGGACGCAACTCTGATTCCGAGTGCGGCTCCAGCTCCGGTTCCGTCCCCGAATCCCTCTGATCCGACTCGTAAGTATATGGCATTGTTGCCTATCATTCTCGTTGAGGATGCGTTTTTGTTGTTGGCGTCTGGTTATCATTGTTTAGTGTATTTCTTTCAGCAAATGCCTGCTACATTTGATGGATTTTCTCTATATTTGGTGCATTCAGTTCTCTATCTGTTTTTGTTTTCTGTTAGAGAGAGAAGCAATTACATGTCATTTGTGGGTTTGTGTGTCGAAAAGATTACTCTGTTTTCCGTATGTATCTATGATGAGGTTCTGAGAATTCAATCATAAATTGCTATTTTTACTTCCATTTCCATCTTCTTTCCACAAGCTTCTTTGTTTGGTCTATAAGTAAATTAGGTGGGAAAAATCTCTAGAGGAATCTTAGACGTGGTTCTTAGCGTTTCATAGTTGAATTCTAGCCTATCATCTTGCCCTCGATCCTTAGTCTTAGTGGTGTGTCCTTTGCAAAAAAGGAAAGTGAGACTTAAATCACCTATTTATACTTACTTCCATCTCATAAGGCTGCTTGTCGCCTTTCCTACATTCTGCGATGTGCCCGTGGAGAGATGGAGAAACTAAAGACTAGTCGCTTCTGGCACTGGTGGATTTGACTCATAATGTGGATGCTTTCTTTGCAGACCAGTTTCTTGACAACCTTTTGGTGGCTTTGACTCATAAGTAAACAGAGAAGCCTCGAAGAAGTGGAAGATAATTGGGAGGATTTTTTTAATTATGCTTATTATTGTTCTTTTCTATCTCTCGTGATTTTTTTTTATCTGTGATTAAAGATGTTGTAGCCTTTTCTTATAATTTCTTTTGCTAGTTGGATGTTGGTTAGGCACTCAGGGCTATATTTTTGCATGGCCTTTTTGTCCTTCCATTGCCCTCAATGAACATAATACAAATGATGGAAAAAAGTCTAAGTCGTTTGCTGAAGTGGAGAGTTTTGCATTGGACTTGTCTGGGTACTTATTAATCTAACATTGCAAATTGGAGAATTTTGTGATTTTCTACAGTCGTGCACATGGACTTTTCTAATGTTCCTCCTTTCTCTTTTGGGCTGTAATTTTCTTATGAGTAATACTTGGGTGCATCTCCAGGTGCACACATCTTTATGCATCCCACTCTCATCACACACATAAAGAATTAAAATATTTCAAAAAAGAAGTAAGAAGAATTTGTCACATGGCAAATTATGATTGGACAATTTGGTGGGATACACAAAGATAGGTGTTGCGTGGGATGTACTTAGGTATTTTTCTTTTTTTATTTATATTTTAATCTAGTTGCGTAGTGAAAAGAAAGGTTCCCGTCAATTCTATTGTGCAGAAATTCGTTATTTGGTGGATCTTTGTTTTCTTTATAAGAATGGAAGAGAAATCAATGTTATGGTTTTGCAGAACTCTCTCTGTACAAAAATCATTTGCACGAGTACACTCAAAAATCAAGGATCCTTTTACCAGTATATCAGACTTTTAATGAAGGATCCCTAGGCATGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAGCAAGATGCTGCAAGAATTGCCTTTGAGTTCATATCAAAAAAGACAAAGGATGATGGCTTTCTTCTCCTTCGTGAGGTATGAGTTATATAGTGAGATTGAAACTTGTTTTGGGGCCTTTAATTTTTAGTATGCTTATAACTGTGCTTGTTTATTTATTTTAGTACAACATATTTGGTGGAGACTGGAGATTTAAACTTTCTGACCTTAATGGAAGGAACGGATGCCTTGACCACTATATTATGCTCATGTTGGTCATAATTTTGCTTGTTTAGTTGATTATAGATGCAATTCTATGATGAGATACCTAGATTTTTGGTTTTGTTACAAATAAGATTTTCTGCATGGATTTTTTTTCTTGTAATTTTCTTTCACAATGTGTACAATAACTTATTTGAAGTAACCAGAAGCAGTAATTTCCACCTGATATATTTTGTTCTTGTTATTGGATGAAGAAATCTTAGTGATAGTTGCATGTAATCACAAATGGTGTAAGATTTCTCATAGTCACAGTCATAGACAACCTCAAAGGTCGGAATTTATGTAAATACTGTTTTAAAAAGCCCTCTCGAGCACGTGCCTAGGCTCAAGGCGCAGGCAAGACGAGGCTCACAAAATAAGGCACACCTCAGGTGCTTGCTTTCTATGAAGCTCCAAGGCTTTAAGCCCTAGACCTTGGGGCTTTTTCACTATTTTTAAAATATAGTAATAATTAAGGTTTTTCCTTCTTTATTAAATAAAAAAAATCAAATTACTAATTCTAAATACAAGATTTCTTTTGTTAGGGGTCTTTTTCTCTTTTTTTTCCTTTTTTTTTCCATATTTCCACTTCAAGTATGCTTTCTCTTCTTTATGTATTACTTTTATATATAGTGCGCCTCACAAAAAAAATGTTTGTGCCTTTTTCGTACCTTGCGTTTAACCCGAGAAGACTATTGCGCTTTATTGCGCTTGAACTTTAAAAAACACTGTATATAATTGATTTTAGTGATAAGGCATTTAGTTTGTCTGAATAAGAAGTTTGGAAATGATGCCCTCGGGAATGTGGTTGTGAGAAACTGGATGCTTTTGTTTGTACTTCATAGGGATAGGATTCAAATGAAAAATAGTTTAGTTTTATTTATTATTTATTTCTTTGAAGAATCTAAGCTTCCAACTGAATTATGAAAGGGCATACAAATGAATAGCCTCAATAGGAACCCAAGAACTACAAGACCTCAAATCCAAAAGAATAAGGCCTAATGGATAATTATAAAATACTTGGTATTATGTAATGTCCTCCCACGACTCCACATATCTCTCCCTCTAAAACTTATATTATTTCTTTCAAGCTACATCTCACAAACAACTGCAAAAAAAAAAAAATAATAAAAAATAAAAAGAATTAGATGAACATAGGTTCCATCTCAAAACCAATCAGCAATGAGAGGAGTAACCTATATATCTTATAAAAATTGTGACGTTTATTAATCTTGCAATGTGCGATCCTCAACAAAGCAAGCCACCACATGAATTTTCCCTTCTTAAAAGAAGGAAAAAGCAAAATTTCTCCATCATAACACTGAAATCCCTATTCTATTCTAAAGGAACACCAAATGCCCTGAAAAAGGGGACTAAATTTGTATTTTTTATTATAAAATCTAGAACCAAATTCAATTGAGACAAGGATCTTGAAAGAATATTTCCAGATCTCTCTTTGCTCCTTCCTACCCTTTCTCCCTCTTTCCCTAGACCCTTTCTCAACCAACACAACCATGACAGCTCTCACACCACCGCATACAGTCCGATGGAGTCCTCACAGCCTCCCAGAGCAACAAAAATCGAGAGAGAAACTTATTATGGAAGTAGATTCTATGTACAGAGGCTCACATCCTAAAATATCTAAAGCTACGAGAGAAACTCTTTAAGAAATTTGGTATTGGTTATTATTTTATTTATTTATTTTCTTATGAAATCAACAAATTTTATTGAGAAGAAACGAAAGAATACAAGGGTATACGTAAAAAGTCAAGCCCACAAAAAGGAAGCCCTCTCAGAGAATTGGGCTCCGGCTACCTAAATCGGTACTTATAGAATAATTACAAAAGATCTTCAAAATCGAAACCTATAAAGAAACATGAAAATTAACAAGAGGCAATGTTTCAAAAAGCTATTGAAGCTTACGCCTTGTGGCAAAAATCGAAGTTGTAGCCTCGAGACTTACGCCTTTGTTGAACCATAAGAGGTTTACGTCTCTCATAGAAGAAGCTTACGCCTTTGTGAAAACGCACCAAGGCTTAAAATCTATGCACTTCTTCTAATGATAAGAAAAATAATAGTGATTTACCTAGCTTCTTCAAAATATTAAGGTTTGATCAGTTGTGACAATTTGAATTAGGACTACTTTTACTGTTGTGACTTTAAAAATACTAAAGGCAAAACTTTATAGTATAAATCAATCATATTAATGATAATAGTAATAGTAGTGATGATAAAGATATCCTTTTAGAATTTTTGATTAAGTGAAAATTGTGGGGGTGGATTTTCTTTTTACACTTTTATATGAAATCATGTTTAGTCGTACTTGGTCATACAAATTTAGAATTTTTAAAAAGTTTTTTATTCACTATTTGAGGCTTATGCCTCATACCGTCTCGAGGCTTACGCCTCGCCTCTTCAAGAGAAAAAACATCAAGGCCGCCATTAGCATTTTAGGACATTGATGAGAGACGAAACCAGGCATCATTAGGGTCTCTCTCCAACCCTCTAAAAACTTTGTTATTTTATTTGCCCAAAGATCTCATAATATAGCACACACCCCAGCAAGCCATAAGAACCAGCCTTTCTTGCAAAAGGATAAATGGAGTAGGAACTCCTTAATCCTCGAGCAAGTGAGAGGCCAAATGCCTGGAGAAAAGAAAAGATTAGATGAAATTGCTAAGCTAGCATGGAAGAAGAAAAATGGTTGCTCATGGTCGGATAGGAGATTGTTGAGAGACCAGTTTCCCTAGGAGTTAGAAATTGTGAACTTAAGAATTCACAATAAAGCTCTGTTAGCCCGATGGCTTTGGCGTTTCCCCCTTGAGTTCAACGCTCTGCCATATATGTGAATTATTTTAAAGTGTGCCTCACTTCACTTAGGCAACGTCTTTTTGTCGCCTCCGATTATGAAACTTGTCGCCTTAAGATGCGCCTTGCACTTTGAAAACGCTGTTAAATACTAGCACTTCACCAATAATGAGATTATATATTGTCACGTTGAAAAGAAAACATATACATATTTGGTTGTTGAAGTACTTTTTATTGACTTCATATCTAACAAACTGTCATTTGTTCTTTTTTCAGGATTTGATGTCATGCAAGTCCATTTTGTCTGAATATACGGACAAAATGAGTTTGAAAAGACCTATATACACAACAAAACACCATAAAGGCTCGGTTCCATTTTTCCAATCCACCTTGGTTTTTGATGGTGTTGTTTATACTAGTGATGTTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCACTTAATGGTATTTAATTGTTGTAAAGAAATACTTCTGAATTATTTCAAAATATTTGGTGCCTTGTCAAAGTTGATTTTTTTAAAATAATAATAATAATAATAATTTTTTTTTTTTTTTTTAGGAGATGCAAGAAATCCTAAATCACAAAAAACTCTTGCGGAAATCATTGCATCTAAAGTCAGATTCCATGCAACGTTGCAAAAGGTTAAAGATTCACATTTTTCTCAAATTCAACCGAAATCCATGCCTGAAAATACAGTGGAACATGTTGCAATGACAGTTAATGAAGAAGATAAAGAAGTTAAATACGCTATTTTGGACAATGGAGTGGTATGTGGTGCAATTTCAAAGGTTTGTCCAACAACTTCTCATTTTCGACCTGAATTTAGATCAACAAAACCGGAAGCATCATCCCCTCCAGTGAGACTCCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAGGAGATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATAGAGAACGGGTAAGTCTTCCTCCATTAATTTTCTTTTCATGAAACTTCATCCAACTTCTAATGTATATAGTGGTCATGGGGTTTTTTGCTGGTTATAGTTATAGAAGTCCATAATTTACAGTTTAAAACTCCCGTGCGCACTTACGTAGGTTGGTGGCCACTTACTTAAGATTTAATATTCTATGAGTTTCTTTAACTCTCAAATAGTGTAGGGTTAGGCAAGTTGTCCCATGAGATTAGTCGAGGTGCGCGTAAGTTGGCCCAGCACTCACGAATATTAAAAAAAAAAAAAAATTCCAGTGTGTGCTTTTTTATGGTTTTTAGGGTATTACATAATTGTTTTCAGTAAATACCAGTCTTGTTACAGCTAGAGCTATTCAATTTGCATGTTCATGGAGAAGAGAGAATTGGCCAAAATTTCTGTAGAAAGACTACTAGTCTGCAATTTCTTTCAATAAAAAAGTGAGTTTGTATATTATGTTCACTATTTTGAAGTGATTGAGATCCTTTCAAGGTGAGATGTGCATTTAAATCATAGTGGTAGTCACCTAAGATTACTAAAATATATTACAAATACTAAATGTAGTATCTATCTAGTAAGATTTGATAATTGTGCCTATGACTAGTATAGATTTATTTAACTTAGTCTGGTTGCTCACAATTGTTAAAATTGTAAAAAAACTGAGGGACCTTCTTGGTTTTGTCTACAATATGATGAATCGCATGGGTAGTAAATGAATTCAGATGTGTGATTAGTTGAGGGAAGTTCTTATTGTTTTTTGGGCTATATGATAGTTGATAGGAGATATGGCATGTCCCCTCAAGTGTCCTGCTATGTTTTACATGAATAATATTAATTTGATTTTGTGCTGCTTATGTGTAAGTTATTTCGATAGTATAAGTATAACTAAATCTTCTTTTGCTAAGCAGGGTGGCAGCCGAGACGAGTCAAACCGCTCCTTGCTCTGTAGCTCAATGACTGTGAAGTGA

mRNA sequence

GAAAAACCCTCGCCTTCCGTTCACAGTCGAGCGCGAAAATATCCCGACATTCATTCATTCATTGATCGCCATTGGCTGACTGTTCCCATCCCATTTCACCAAATTCTTCTCTTCGAATTCCATTACCCTCGATAACAGTGGATGATGATGGAAGAATCCGGTACGGTTGAAGCAGATGCGCCGCAACAATCTTCAGTTCCGACTGTTGTTTCGCCGGACTCAGCTCCGACTGTTGTTCCGCCGGACTCAGTTCCGACTGTTGTTTCGCCGGACTCAGCTCCGACTGTTGTTCCGCCGGACTCAGTTCCGACTGTTGTTCCGCCGGACTCAATTCCGACTGTTGTTCCGCCTCCTATTCCGGTGGAAAACTCCGATACTCCTCAGCCTCAAGCAGATATTCATCCTCCATCTGTGCTACCGGACGCAACTCTGATTCCGAGTGCGGCTCCAGCTCCGGTTCCGTCCCCGAATCCCTCTGATCCGACTCGCACTCAGGGCTATATTTTTGCATGGCCTTTTTGTCCTTCCATTGCCCTCAATGAACATAATACAAATGATGGAAAAAAGTCTAAGTCGTTTGCTGAAGTGGAGAGTTTTGCATTGGACTTGTCTGGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAGCAAGATGCTGCAAGAATTGCCTTTGAGTTCATATCAAAAAAGACAAAGGATGATGGCTTTCTTCTCCTTCGTGAGGATTTGATGTCATGCAAGTCCATTTTGTCTGAATATACGGACAAAATGAGTTTGAAAAGACCTATATACACAACAAAACACCATAAAGGCTCGGTTCCATTTTTCCAATCCACCTTGGTTTTTGATGGTGTTGTTTATACTAGTGATGTTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCACTTAATGGAGATGCAAGAAATCCTAAATCACAAAAAACTCTTGCGGAAATCATTGCATCTAAAGTCAGATTCCATGCAACGTTGCAAAAGGTTAAAGATTCACATTTTTCTCAAATTCAACCGAAATCCATGCCTGAAAATACAGTGGAACATGTTGCAATGACAGTTAATGAAGAAGATAAAGAAGTTAAATACGCTATTTTGGACAATGGAGTGGTATGTGGTGCAATTTCAAAGGTTTGTCCAACAACTTCTCATTTTCGACCTGAATTTAGATCAACAAAACCGGAAGCATCATCCCCTCCAGTGAGACTCCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAGGAGATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATAGAGAACGGTATAAGTATAACTAAATCTTCTTTTGCTAAGCAGGGTGGCAGCCGAGACGAGTCAAACCGCTCCTTGCTCTGTAGCTCAATGACTGTGAAGTGA

Coding sequence (CDS)

ATGATGATGGAAGAATCCGGTACGGTTGAAGCAGATGCGCCGCAACAATCTTCAGTTCCGACTGTTGTTTCGCCGGACTCAGCTCCGACTGTTGTTCCGCCGGACTCAGTTCCGACTGTTGTTTCGCCGGACTCAGCTCCGACTGTTGTTCCGCCGGACTCAGTTCCGACTGTTGTTCCGCCGGACTCAATTCCGACTGTTGTTCCGCCTCCTATTCCGGTGGAAAACTCCGATACTCCTCAGCCTCAAGCAGATATTCATCCTCCATCTGTGCTACCGGACGCAACTCTGATTCCGAGTGCGGCTCCAGCTCCGGTTCCGTCCCCGAATCCCTCTGATCCGACTCGCACTCAGGGCTATATTTTTGCATGGCCTTTTTGTCCTTCCATTGCCCTCAATGAACATAATACAAATGATGGAAAAAAGTCTAAGTCGTTTGCTGAAGTGGAGAGTTTTGCATTGGACTTGTCTGGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAGCAAGATGCTGCAAGAATTGCCTTTGAGTTCATATCAAAAAAGACAAAGGATGATGGCTTTCTTCTCCTTCGTGAGGATTTGATGTCATGCAAGTCCATTTTGTCTGAATATACGGACAAAATGAGTTTGAAAAGACCTATATACACAACAAAACACCATAAAGGCTCGGTTCCATTTTTCCAATCCACCTTGGTTTTTGATGGTGTTGTTTATACTAGTGATGTTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCACTTAATGGAGATGCAAGAAATCCTAAATCACAAAAAACTCTTGCGGAAATCATTGCATCTAAAGTCAGATTCCATGCAACGTTGCAAAAGGTTAAAGATTCACATTTTTCTCAAATTCAACCGAAATCCATGCCTGAAAATACAGTGGAACATGTTGCAATGACAGTTAATGAAGAAGATAAAGAAGTTAAATACGCTATTTTGGACAATGGAGTGGTATGTGGTGCAATTTCAAAGGTTTGTCCAACAACTTCTCATTTTCGACCTGAATTTAGATCAACAAAACCGGAAGCATCATCCCCTCCAGTGAGACTCCCAATAGAATTTGTGCCTTCAACTTTAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAGGAGATCTAAGAACAAGAGAAAGGCACGTAAGAAACTGTGTATAGAGAACGGTATAAGTATAACTAAATCTTCTTTTGCTAAGCAGGGTGGCAGCCGAGACGAGTCAAACCGCTCCTTGCTCTGTAGCTCAATGACTGTGAAGTGA

Protein sequence

MMMEESGTVEADAPQQSSVPTVVSPDSAPTVVPPDSVPTVVSPDSAPTVVPPDSVPTVVPPDSIPTVVPPPIPVENSDTPQPQADIHPPSVLPDATLIPSAAPAPVPSPNPSDPTRTQGYIFAWPFCPSIALNEHNTNDGKKSKSFAEVESFALDLSGSTVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNGDARNPKSQKTLAEIIASKVRFHATLQKVKDSHFSQIQPKSMPENTVEHVAMTVNEEDKEVKYAILDNGVVCGAISKVCPTTSHFRPEFRSTKPEASSPPVRLPIEFVPSTLEEPVGDRATGSKRRSKNKRKARKKLCIENGISITKSSFAKQGGSRDESNRSLLCSSMTVK

Homology

[Close]

BLAST of Lsi05G003100 vs. Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.1e-15
Identity = 56/142 (39.44%), Postives = 84/142 (59.15%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFI--SKKTKDDG---FLLLREDLMSCKS 218
           STVMVD   + S    R  + AEQDAA++A++ +   K+T+ D    F L+ +D++  KS
Sbjct: 72  STVMVDGEEFSSTFCHRRVKDAEQDAAKVAYDTLLERKETETDDTDVFELIDQDVVFSKS 131

Query: 219 ILSEYTDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAIL 278
           IL EYT K    +P Y+    +GSV  + S++ F G  YT   +R+KK+AEQ AARAA+ 
Sbjct: 132 ILHEYTTKTKTDQPEYSVTKTEGSVTPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVK 191

Query: 279 SLNGDARNPKSQKTLAEIIASK 296
           SL        +  ++A+I+ SK
Sbjct: 192 SLLA-----TNYTSMAKIVRSK 208

[Close]

BLAST of Lsi05G003100 vs. Swiss-Prot
Match: DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-11
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEY 218
           STV+++   Y S   F NR+AAEQ AA +A   I K    +  +   ++   CK++L EY
Sbjct: 69  STVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQEY 128

Query: 219 TDKMSLKRPIY-TTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNG 278
             KM+   P Y  TK   G  PF   T+   G+ Y    +R+KK+AE  AAR A+L++ G
Sbjct: 129 AQKMNYAIPSYICTKPASGLAPFL-CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQG 188

Query: 279 DARNPKSQKTLAEIIASK 296
            +    +  T   ++  K
Sbjct: 189 QSEGSANGATKYIVVPGK 205

[Close]

BLAST of Lsi05G003100 vs. Swiss-Prot
Match: DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-11
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEY 218
           STV+++   Y S   F NR+AAEQ AA +A   I K    +  +   ++   CK++L EY
Sbjct: 67  STVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQEY 126

Query: 219 TDKMSLKRPIY-TTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNG 278
             KM+   P Y  TK   G  PF   T+   G+ Y    +R+KK+AE  AAR A+L++ G
Sbjct: 127 AQKMNYAIPSYICTKSASGLAPFI-CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQG 186

Query: 279 DARNPKSQKTLAEIIASK 296
            +    +  T   ++  K
Sbjct: 187 QSEGSANGATKYIVVPGK 203

[Close]

BLAST of Lsi05G003100 vs. Swiss-Prot
Match: DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-11
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEY 218
           STV+++   Y S   F NR+AAEQ AA +A   I K    +  +   ++   CK++L EY
Sbjct: 67  STVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQEY 126

Query: 219 TDKMSLKRPIY-TTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNG 278
             KM+   P Y  TK   G  PF   T+   G+ Y    +R+KK+AE  AAR A+L++ G
Sbjct: 127 AQKMNYAIPSYICTKSASGLAPFI-CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQG 186

Query: 279 DARNPKSQKTLAEIIASK 296
            +    +  T   ++  K
Sbjct: 187 QSEGSANGATKYIVVPGK 203

[Close]

BLAST of Lsi05G003100 vs. Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.8e-11
Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLLLR-EDLMSCKSILSE 218
           STV++D V Y S   F NR+AAEQ AA +A   ++K ++    +     +   CK++L E
Sbjct: 49  STVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQE 108

Query: 219 YTDKMSLKRPIYTTKHHK--GSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSL 278
           Y  KM+   P+Y  +  +  G V  F  T+   G+ YT   +R+KK+AE  A R A+L++
Sbjct: 109 YAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 168

Query: 279 NGDARN 282
             D +N
Sbjct: 169 QSDTKN 174

[Close]

BLAST of Lsi05G003100 vs. TrEMBL
Match: A0A0A0LCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 1.6e-83
Identity = 171/224 (76.34%), Postives = 192/224 (85.71%), Query Frame = 1


Query: 205 REDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAE 264
           + DLM CKSILSEYTDKM L+RPIYTTKH++GSV FFQSTLVFDGVVYTSD+ R+KKEAE
Sbjct: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156

Query: 265 QLAARAAILSLNGDARNPKSQKTLAEIIASKVRFHATLQKVKDSHFSQIQPKSMPENTVE 324
           QLAARAAILSL+ DA NPKSQK L +IIASKVRFHA LQKVKDS+FSQ QPKSMPENTVE
Sbjct: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216

Query: 325 HVAMTVNEEDKEVKYAILDNGVVCGAISKVCPTTSHFRPEFRSTKPEASSPPVRLPIEFV 384
            VAMTVN E KE+K A+LD G+VCGAIS+ CP TS F+PEF +TKP+ SSP +RLPIEFV
Sbjct: 217 RVAMTVN-EGKELKDAVLDGGMVCGAISEACP-TSQFQPEFSATKPDGSSPLMRLPIEFV 276

Query: 385 PSTLEEPVGDRAT-GSKRRSKNKRKARKKLCIENGISITKSSFA 428
            STLEEPVG  AT GSKR+SKNKRKARKKLC+EN ++   S  A
Sbjct: 277 RSTLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTA 318

[Close]

BLAST of Lsi05G003100 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.8e-45
Identity = 124/263 (47.15%), Postives = 157/263 (59.70%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEY 218
           STV+VD   Y SPNTF +R+AAEQD AR+A EFISKK KD+G  L+RED + CKSIL+E+
Sbjct: 56  STVLVDGATYTSPNTFSHRKAAEQDVARLALEFISKKIKDEGCPLIREDTVFCKSILNEF 115

Query: 219 TDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNGD 278
             KM+L++P YTT   +G +P F S+LVF+GV YT D  R+KKEAEQLAAR  ILS+ G 
Sbjct: 116 AVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSILG- 175

Query: 279 ARNPKSQKTLAEIIASKVRFHATLQKVKDSHFSQIQPKSMPENTVEHVAMTVNEEDKEVK 338
             N  S   L+EII SKV+ +A L +VKD   S I    +P      +      + KEV+
Sbjct: 176 --NSGSGTLLSEIIKSKVKLYAALHRVKDP--SYIHTGILPIGLTSGIPPC---KGKEVE 235

Query: 339 YAILDNGVVCGAISKV-------CPTTSHFRPEFRSTKPEASSPPVRLPIEFVPSTLEEP 398
            A   + ++  A+S          P T     E    KP  SS  +  PI FVPS  E+P
Sbjct: 236 VAPGTDQLLPTAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSSEVIAPPISFVPSVFEQP 295

Query: 399 -VGDRATGSKRRSKNKRKARKKL 414
            V    TG KR  KNK+KA KKL
Sbjct: 296 LVVSPTTGRKRNRKNKKKANKKL 310

[Close]

BLAST of Lsi05G003100 vs. TrEMBL
Match: A0A061EHS9_THECC (DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TCM_019209 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.6e-38
Identity = 105/252 (41.67%), Postives = 149/252 (59.13%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEY 218
           STV+VD   Y S +TF +R+AAEQDAA++A + I+KK KD+G  ++RED + CKSIL+E+
Sbjct: 64  STVLVDGTSYTSLDTFSHRKAAEQDAAKVALDCITKKIKDEGCPIIREDTVFCKSILNEF 123

Query: 219 TDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNGD 278
             KM+++ P Y T   +G +P F S+LVF+ V Y+    R+KKEAEQLAARAA+LSL  D
Sbjct: 124 AVKMNMEMPSYNTIQSEGLIPLFVSSLVFNDVTYSGKTGRNKKEAEQLAARAALLSLLDD 183

Query: 279 ARNPKSQKTLAEIIASKVRFHATLQKVKDSHFSQIQPKSMPENTVEHVAMTVNEEDKEVK 338
           +R       L+EII SK + +  L KVKDS  S I       NT  H       +++E++
Sbjct: 184 SRYGTF---LSEIIKSKAKLYVALNKVKDSSISHIGTTPAGANTSIH-------KNEEIE 243

Query: 339 YAILDNGVVCGAISKVCPTTSHFRPEFRSTKPEASSPPVRLPIEFVPSTLEE--PVGDRA 398
            A++ N V    I             F+  K E  S  + LPI FVP+ + E  PVG+ +
Sbjct: 244 TAVVTNSVPNTVILPSSSGAKRPHHVFKIEKLEEGSEHIDLPIVFVPTAVAESLPVGESS 303

Query: 399 TGSKRRSKNKRK 409
           +  +RR K + K
Sbjct: 304 SRKRRRKKKRAK 305

[Close]

BLAST of Lsi05G003100 vs. TrEMBL
Match: A0A067KA91_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 96/202 (47.52%), Postives = 126/202 (62.38%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEY 218
           STV+VD   Y SPNTF +R+ AEQDAAR+A E I KKTKD+G  L+ ED + CKSIL EY
Sbjct: 89  STVIVDGEQYTSPNTFAHRKGAEQDAARVAMECILKKTKDEGCPLIYEDKVFCKSILYEY 148

Query: 219 TDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNGD 278
             KM +++P+Y T   +G  P F STLVF+GV YT D  R+KKEAEQLAAR+AILSL G 
Sbjct: 149 AVKMQIEKPMYNTFQPQGLFPIFGSTLVFNGVTYTGDTGRTKKEAEQLAARSAILSLMG- 208

Query: 279 ARNPKSQKTLAEIIASKVRFHATLQKVKDSHFSQIQPKSMPENTVEHVAMTVNEEDKEVK 338
             NP S   ++EII SK + +A+L K K+S     Q  S  +   +H  +    ++KE +
Sbjct: 209 --NPVSSAIISEIIKSKSKLYASLYKFKESQL-DAQLDSQSQLDAQHGIVPAVNKNKEAE 268

Query: 339 YAILDNGVVCGAISKVCPTTSH 361
             ++ N V   AI +      H
Sbjct: 269 VVLVGNNVPLRAIPQPTSPQPH 286

[Close]

BLAST of Lsi05G003100 vs. TrEMBL
Match: A0A0A0LAZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.8e-35
Identity = 95/150 (63.33%), Postives = 108/150 (72.00%), Query Frame = 1


Query: 60  PPDSIPTVVPPPIPVENSDTPQPQADIHPPSVLPDATLIPSAAPAPVPSPNPSDPTRT-- 119
           P DS+PTVV PPIPVENS+T QPQ DIHPPSVLPD   IPSAAPAP+PSPN SD T+   
Sbjct: 18  PSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFV 77

Query: 120 -QGYIFAWPFCPSIALNEHNTNDGKKSKSFAEVESFALDLSGSTVMVDEVHYVSPNTFRN 179
            + ++  +     IA+  + T D           S +L    STVMVDEVHYVSPNTFRN
Sbjct: 78  YKNHLHEYTQKAKIAVPVYQTID---------EGSPSLPKYRSTVMVDEVHYVSPNTFRN 137

Query: 180 RRAAEQDAARIAFEFISKKTKDDGFLLLRE 207
           RRAAEQDAAR+AFE+ISKKTKDD FLLLRE
Sbjct: 138 RRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of Lsi05G003100 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-12
Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLLLR-EDLMSCKSILSE 218
           STV++D V Y S   F NR+AAEQ AA +A   ++K ++    +     +   CK++L E
Sbjct: 49  STVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHETGLCKNLLQE 108

Query: 219 YTDKMSLKRPIYTTKHHK--GSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSL 278
           Y  KM+   P+Y  +  +  G V  F  T+   G+ YT   +R+KK+AE  A R A+L++
Sbjct: 109 YAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 168

Query: 279 NGDARN 282
             D +N
Sbjct: 169 QSDTKN 174

[Close]

BLAST of Lsi05G003100 vs. TAIR10
Match: AT2G28380.1 (AT2G28380.1 dsRNA-binding protein 2)

HSP 1 Score: 50.1 bits (118), Expect = 4.2e-06
Identity = 37/128 (28.91%), Postives = 60/128 (46.88%), Query Frame = 1


Query: 159 STVMVDEVHYVSPNTFRNRRAAEQDAARIAFEFISKKTKDDGFLL-LREDLMSCKSILSE 218
           +TV  +   + SP      R AE  AA +A   +S +         + ++    K++L E
Sbjct: 35  ATVNFNGEIFESPQYCSTLRQAEHSAAEVALNALSNRGPSHSLAARILDETGVYKNLLQE 94

Query: 219 YTDKMSLKRPIYTT-KHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLN 278
              ++    P YTT +   G  P F  T+   G+ +T D +++KK+AE+ AA AA  SL 
Sbjct: 95  IAQRVGAPLPRYTTFRSGLGHQPVFTGTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLK 154

Query: 279 GDARNPKS 285
             A+   S
Sbjct: 155 QLAKETSS 162

[Close]

BLAST of Lsi05G003100 vs. NCBI nr
Match: gi|659114468|ref|XP_008457066.1| (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 486.5 bits (1251), Expect = 5.0e-134
Identity = 275/370 (74.32%), Postives = 301/370 (81.35%), Query Frame = 1


Query: 62  DSIPTVVPPPIPVENSDTPQPQADIHPPSVLPDATLIPSAAPAPVPSPNPSDPTRT---Q 121
           DS+PTVV PPIPV+N  T Q Q +IHPPSVLPD  LIPSAAPAP+PSPN SDPT+    +
Sbjct: 20  DSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAAPAPIPSPNLSDPTQIFVYK 79

Query: 122 GYIFAWPFCPSIALNEHNTNDGKKSKSFAEVESFALDLSGSTVMVDEVHYVSPNTFRNRR 181
            ++  +     IA+  + T D           S  L    STV++DEVHYVSPNTFRNRR
Sbjct: 80  NHLHEYAQKARIAVPVYQTIDEG---------SPGLPKFRSTVLLDEVHYVSPNTFRNRR 139

Query: 182 AAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSV 241
           AAEQDAARIAFE+ISKKTKDD FLLLREDL+ CKSILSEYTDKM L+RPIYTTKHHKGSV
Sbjct: 140 AAEQDAARIAFEYISKKTKDDAFLLLREDLILCKSILSEYTDKMGLERPIYTTKHHKGSV 199

Query: 242 PFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNGDARNPKSQKTLAEIIASKVRF 301
           P FQSTLVFDGVVYTSD+SR+KKEAEQLAARAAILSL+ DA N KSQKTLA+IIASKVRF
Sbjct: 200 PLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAINIKSQKTLADIIASKVRF 259

Query: 302 HATLQKVKDSHFSQIQPKSMPENTVEHVAMTVNEEDKEVKYAILDNGVVCGAISKVCPTT 361
           HA LQKVKDSHFSQIQPKSMPENTVE VAMTVN EDK VK A+ D+GVVCGAIS+ CP T
Sbjct: 260 HAMLQKVKDSHFSQIQPKSMPENTVERVAMTVN-EDKNVKDAVSDSGVVCGAISEACP-T 319

Query: 362 SHFRPEFRSTKPEASSPPVRLPIEFVPSTLEEPVGDRA-TGSKRRSKNKRKARKKLCIEN 421
           S FRPEF STKPE SSP VRLPIEFVPSTLE PVGD A TGSKRRSKNKRKARKKLC+EN
Sbjct: 320 SLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRRSKNKRKARKKLCMEN 378

Query: 422 GISITKSSFA 428
           G++   S  A
Sbjct: 380 GVATETSQTA 378

[Close]

BLAST of Lsi05G003100 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 482.6 bits (1241), Expect = 7.2e-133
Identity = 275/370 (74.32%), Postives = 301/370 (81.35%), Query Frame = 1


Query: 62  DSIPTVVPPPIPVENSDTPQPQADIHPPSVLPDATLIPSAAPAPVPSPNPSDPTRT---Q 121
           DS+PTVV PPIPV+N  T Q Q +IHPPSVLPD  LIPSAAPAP+PSPN SDPT+    +
Sbjct: 20  DSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAAPAPIPSPNLSDPTQIFVYK 79

Query: 122 GYIFAWPFCPSIALNEHNTNDGKKSKSFAEVESFALDLSGSTVMVDEVHYVSPNTFRNRR 181
            ++  +     IA+  + T D           S  L    STV++DEVHYVSPNTFRNRR
Sbjct: 80  NHLHEYAQKARIAVPVYQTIDEG---------SPGLPKFRSTVLLDEVHYVSPNTFRNRR 139

Query: 182 AAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSV 241
           AAEQDAARIAFE+ISKKTKDD FLLLREDL+ CKSILSEYTDKM L+RPIYTTKHHKGSV
Sbjct: 140 AAEQDAARIAFEYISKKTKDDAFLLLREDLILCKSILSEYTDKMGLERPIYTTKHHKGSV 199

Query: 242 PFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNGDARNPKSQKTLAEIIASKVRF 301
           P FQSTLVFDGVVYTSD+SR+KKEAEQLAARAAILSL+ DA N KSQKTLA+IIASKVRF
Sbjct: 200 PLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLH-DAINIKSQKTLADIIASKVRF 259

Query: 302 HATLQKVKDSHFSQIQPKSMPENTVEHVAMTVNEEDKEVKYAILDNGVVCGAISKVCPTT 361
           HA LQKVKDSHFSQIQPKSMPENTVE VAMTVN EDK VK A+ D+GVVCGAIS+ CP T
Sbjct: 260 HAMLQKVKDSHFSQIQPKSMPENTVERVAMTVN-EDKNVKDAVSDSGVVCGAISEACP-T 319

Query: 362 SHFRPEFRSTKPEASSPPVRLPIEFVPSTLEEPVGDRA-TGSKRRSKNKRKARKKLCIEN 421
           S FRPEF STKPE SSP VRLPIEFVPSTLE PVGD A TGSKRRSKNKRKARKKLC+EN
Sbjct: 320 SLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRRSKNKRKARKKLCMEN 377

Query: 422 GISITKSSFA 428
           G++   S  A
Sbjct: 380 GVATETSQTA 377

[Close]

BLAST of Lsi05G003100 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 470.7 bits (1210), Expect = 2.8e-129
Identity = 266/372 (71.51%), Postives = 299/372 (80.38%), Query Frame = 1


Query: 60  PPDSIPTVVPPPIPVENSDTPQPQADIHPPSVLPDATLIPSAAPAPVPSPNPSDPTRT-- 119
           P DS+PTVV PPIPVENS+T QPQ DIHPPSVLPD   IPSAAPAP+PSPN SD T+   
Sbjct: 18  PSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFV 77

Query: 120 -QGYIFAWPFCPSIALNEHNTNDGKKSKSFAEVESFALDLSGSTVMVDEVHYVSPNTFRN 179
            + ++  +     IA+  + T D           S +L    STVMVDEVHYVSPNTFRN
Sbjct: 78  YKNHLHEYTQKAKIAVPVYQTIDEG---------SPSLPKYRSTVMVDEVHYVSPNTFRN 137

Query: 180 RRAAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHKG 239
           RRAAEQDAAR+AFE+ISKKTKDD FLLLREDLM CKSILSEYTDKM L+RPIYTTKH++G
Sbjct: 138 RRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQG 197

Query: 240 SVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNGDARNPKSQKTLAEIIASKV 299
           SV FFQSTLVFDGVVYTSD+ R+KKEAEQLAARAAILSL+ DA NPKSQK L +IIASKV
Sbjct: 198 SVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKV 257

Query: 300 RFHATLQKVKDSHFSQIQPKSMPENTVEHVAMTVNEEDKEVKYAILDNGVVCGAISKVCP 359
           RFHA LQKVKDS+FSQ QPKSMPENTVE VAMTVN E KE+K A+LD G+VCGAIS+ CP
Sbjct: 258 RFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVN-EGKELKDAVLDGGMVCGAISEACP 317

Query: 360 TTSHFRPEFRSTKPEASSPPVRLPIEFVPSTLEEPVGDRAT-GSKRRSKNKRKARKKLCI 419
            TS F+PEF +TKP+ SSP +RLPIEFV STLEEPVG  AT GSKR+SKNKRKARKKLC+
Sbjct: 318 -TSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKARKKLCM 377

Query: 420 ENGISITKSSFA 428
           EN ++   S  A
Sbjct: 378 ENRVATETSQTA 378

[Close]

BLAST of Lsi05G003100 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 466.8 bits (1200), Expect = 4.1e-128
Identity = 266/372 (71.51%), Postives = 299/372 (80.38%), Query Frame = 1


Query: 60  PPDSIPTVVPPPIPVENSDTPQPQADIHPPSVLPDATLIPSAAPAPVPSPNPSDPTRT-- 119
           P DS+PTVV PPIPVENS+T QPQ DIHPPSVLPD   IPSAAPAP+PSPN SD T+   
Sbjct: 18  PSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFV 77

Query: 120 -QGYIFAWPFCPSIALNEHNTNDGKKSKSFAEVESFALDLSGSTVMVDEVHYVSPNTFRN 179
            + ++  +     IA+  + T D           S +L    STVMVDEVHYVSPNTFRN
Sbjct: 78  YKNHLHEYTQKAKIAVPVYQTIDEG---------SPSLPKYRSTVMVDEVHYVSPNTFRN 137

Query: 180 RRAAEQDAARIAFEFISKKTKDDGFLLLREDLMSCKSILSEYTDKMSLKRPIYTTKHHKG 239
           RRAAEQDAAR+AFE+ISKKTKDD FLLLREDLM CKSILSEYTDKM L+RPIYTTKH++G
Sbjct: 138 RRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQG 197

Query: 240 SVPFFQSTLVFDGVVYTSDVSRSKKEAEQLAARAAILSLNGDARNPKSQKTLAEIIASKV 299
           SV FFQSTLVFDGVVYTSD+ R+KKEAEQLAARAAILSL+ DA NPKSQK L +IIASKV
Sbjct: 198 SVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH-DATNPKSQKALGDIIASKV 257

Query: 300 RFHATLQKVKDSHFSQIQPKSMPENTVEHVAMTVNEEDKEVKYAILDNGVVCGAISKVCP 359
           RFHA LQKVKDS+FSQ QPKSMPENTVE VAMTVN E KE+K A+LD G+VCGAIS+ CP
Sbjct: 258 RFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVN-EGKELKDAVLDGGMVCGAISEACP 317

Query: 360 TTSHFRPEFRSTKPEASSPPVRLPIEFVPSTLEEPVGDRAT-GSKRRSKNKRKARKKLCI 419
            TS F+PEF +TKP+ SSP +RLPIEFV STLEEPVG  AT GSKR+SKNKRKARKKLC+
Sbjct: 318 -TSQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKARKKLCM 377

Query: 420 ENGISITKSSFA 428
           EN ++   S  A
Sbjct: 378 ENRVATETSQTA 377

[Close]

BLAST of Lsi05G003100 vs. NCBI nr
Match: gi|700202703|gb|KGN57836.1| (hypothetical protein Csa_3G345370 [Cucumis sativus])

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 171/224 (76.34%), Postives = 192/224 (85.71%), Query Frame = 1


Query: 205 REDLMSCKSILSEYTDKMSLKRPIYTTKHHKGSVPFFQSTLVFDGVVYTSDVSRSKKEAE 264
           + DLM CKSILSEYTDKM L+RPIYTTKH++GSV FFQSTLVFDGVVYTSD+ R+KKEAE
Sbjct: 97  KHDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAE 156

Query: 265 QLAARAAILSLNGDARNPKSQKTLAEIIASKVRFHATLQKVKDSHFSQIQPKSMPENTVE 324
           QLAARAAILSL+ DA NPKSQK L +IIASKVRFHA LQKVKDS+FSQ QPKSMPENTVE
Sbjct: 157 QLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVE 216

Query: 325 HVAMTVNEEDKEVKYAILDNGVVCGAISKVCPTTSHFRPEFRSTKPEASSPPVRLPIEFV 384
            VAMTVN E KE+K A+LD G+VCGAIS+ CP TS F+PEF +TKP+ SSP +RLPIEFV
Sbjct: 217 RVAMTVN-EGKELKDAVLDGGMVCGAISEACP-TSQFQPEFSATKPDGSSPLMRLPIEFV 276

Query: 385 PSTLEEPVGDRAT-GSKRRSKNKRKARKKLCIENGISITKSSFA 428
            STLEEPVG  AT GSKR+SKNKRKARKKLC+EN ++   S  A
Sbjct: 277 RSTLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVATETSQTA 318

The following BLAST results are available for this feature:

BLAST of Lsi05G003100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRB4_ORYSJ	6.1e-15	39.44	Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE...	[more]
DRB3_ORYSJ	1.4e-11	34.06	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE...	[more]
DRB7_ORYSJ	1.8e-11	34.06	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE...	[more]
DRB8_ORYSJ	1.8e-11	34.06	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE...	[more]
DRB1_ARATH	1.8e-11	35.71	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1	[more]

BLAST of Lsi05G003100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCN7_CUCSA	1.6e-83	76.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1	[more]
D7TSR3_VITVI	6.8e-45	47.15	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=...	[more]
A0A061EHS9_THECC	1.6e-38	41.67	DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TC...	[more]
A0A067KA91_JATCU	1.8e-37	47.52	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1	[more]
A0A0A0LAZ4_CUCSA	2.8e-35	63.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1	[more]

BLAST of Lsi05G003100 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09700.1	1.0e-12	35.71	dsRNA-binding domain-like superfamily protein	[more]
AT2G28380.1	4.2e-06	28.91	dsRNA-binding protein 2	[more]

BLAST of Lsi05G003100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114468\|ref\|XP_008457066.1\|	5.0e-134	74.32	PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo]	[more]
gi\|659114470\|ref\|XP_008457067.1\|	7.2e-133	74.32	PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|449464150\|ref\|XP_004149792.1\|	2.8e-129	71.51	PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus]	[more]
gi\|778680845\|ref\|XP_011651405.1\|	4.1e-128	71.51	PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus]	[more]
gi\|700202703\|gb\|KGN57836.1\|	2.4e-83	76.34	hypothetical protein Csa_3G345370 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035194	posttranscriptional gene silencing by RNA
biological_process	GO:0070918	production of small RNA involved in gene silencing by RNA
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003100.1	Lsi05G003100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 209..278 score: 6.3
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 212..274 score: 2.2
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 211..276 score: 3.
IPR014720	Double-stranded RNA-binding domain	PROFILE	PS50137	DS_RBD	coord: 210..277 score: 9
None	No IPR available	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 25..344 score: 2.5
None	No IPR available	PANTHER	PTHR11207:SF8	SUBFAMILY NOT NAMED	coord: 25..344 score: 2.5
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 159..192 score: 9.43E-5coord: 207..276 score: 9.59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003100	CmaCh14G008510	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003100	CmoCh14G008650	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003100	Cla013177	Watermelon (97103) v1	lsiwmB361
Lsi05G003100	MELO3C020280	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003100	ClCG05G011010	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003100	MELO3C020280.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003100	Cla97C05G093280	Watermelon (97103) v2	lsiwmbB329
Lsi05G003100	Bhi01G001352	Wax gourd	lsiwgoB431
Lsi05G003100	Cp4.1LG03g05940	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003100	Carg24224	Silver-seed gourd	carlsiB158

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003100	Cucumber (Gy14) v1	cgylsiB322
Lsi05G003100	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003100	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003100	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003100	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003100	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003100	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003100	Silver-seed gourd	carlsiB700
Lsi05G003100	Cucumber (Chinese Long) v3	cuclsiB231