Carg24224 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24224
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Double-stranded RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_191 : 47947 .. 50410 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGACCGGAAATTTCCCCTGCTATTCATTCATTGCCATTGCCTAATTCTTCCCATTTCAATTTGTTCTCATCGAGTTTCGATAACATTCGATCATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCGGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCACCTGTTTTACCGGACGCAATTCTGATTTCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCGTAAGTCTATGGTATTGTTGCCTATCATTGTTTTTTAGGCGTTTTGATTGTTACGGTTTAGTGTTTTTATTTGAGCTAATGCTGCTGTTAGATGATGGATTTCCTCTTCATTTGGTGCATGAAGTTTTCTAGCTGTTTTTTTTTTTTTTTTTTTCTGTTATAGTGAGAAGCAATTGCACTCCTTCTGTGAGTTCGCGTGGTGCCTGTCTGTGTGTTGAAAAGATAACTCTGTTTTTCTGTATGTATCTACGAAGAGGTCCTGAGAATTCGATCTTAAGTTGCTATGTTTACTTTCATTTTCTTTTCACAATCTTTGGACGCTGGATTATTTTGCGAGTTTGAATACTGGCAGCTGTGTGGTGATGATCTAGAGATTCCTTCTTTGTTCAGTTAAAAAAAATTGGTGGAAAAATTCTCTAGAAGAAATTGTTCTATGTGGTTCTTAGCGCTTCTTAATTGAATCGTAGCCTATCACCTTGCCCTCGATTTCTAGTGGTGTGGCATTCGCGAAAAGAATAGTGAGATTTAAATCACCTATTTATTCGTATTTCCTATACTGTTCCTACACTCTCTGGTGTGCTCGATGAGAGATGGATAAACTAAGGACTAATCACTTCAGGCACTAGCTGGTCCTCATTGGAGCAACAAACCCGAATTCGGTGGGGGTTTACTGGCATAGCTCTCTGTTTTGATCTGACAATGAGGACTCTTTCTTTGAAGACCAGTTTCTTGACAATCCTGTGGTGGGTTTAACTCGTAAGTAACCAGATAAGCCTCGAAGAAGTGAAAGATAAATGGGAGGATGTTCTGAATTTTGATCATTTTATTATTGTTCCTTTTCTTTTGCATCTTCCTTGATTTTTCTATTTTCTGTGATTAAAGATGTAGGAGCCTTTTCTTATAATTTCTTTTGCTAGTTCTGCATCTTGGTTTGGCACTCAGGGCTTTGTTATTGTATGGCCTTTTTCTACTTCCATTGCCTTCAACGAAAGTATTAAAAAAGAAAGGAAAAAAAGACGAAGTCATTTACTGAAGTGGAGAGTTTTGCAATATTGGACGTGTCTGGGTACTTATCTGATCTGACGTTGCTGATGGGGGACTTTTGTAATTTTCCACAGCATGGACTCTTCTAATGTCCCGCCTTTCTCTTTCGGGCTGTAATTTGATTATTATATTTTAATCTAGTTGCCTAATAAAAGTAAAGGTTCCCCCACAGTTCTAGTGTGCAGAAATTTGTTATTTGGTGGATCTTTGTTTTCTTGATAAGAGCAGAAAAGAATTAATGTTATGACTTTCTTGTACTTGGTTTTGCAGAACTCTTCCTGTACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCGTACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCTAAGGATGATGGATTTGTTCTCCTTCATGAGGTATGACTTATATGATGAGACTGAAACTTGTTTGGTGGCCTTTGATTTTTAGCATGCTTGTTTCTTTATGTATTTTTTTTTATTTTAGGCAACATTGTGGGGGAAATTTAAACCTTCTGAACTTAATGGAAGAAATAGATGCTTTGACCACTATATTATGCTCATGTTGGCTATATTTTTGCTTGTTTAGTTGATTATAGACGCAATTCAATGATGAGATTTCCTACCTAGACTTTCAGTTTGTTACAAATAAGTTTTTATGTATGGAGATTACCTTTTGTAATTTTATTTCGCAATGTGTACAATAACTTATTTGAATCCAACAGAAACAGTAATTTCTACCCGATATATTTGTTATTGTTCTTGGATGAAAAAATCTTAGTAATAATTGCATGTAATCACTTAAGTTGTATAAGATTTCTCATAGTCATAGTCATCGACATTCTCGAAGGTTGGAATTTATCTAATTGATTTTAGTGATAAGGCATTTAGTCTGTCTGAATAAAAAGTTCAGAAATGATGCCTTCGGGAATGAGGTTGTGAGACACTGTTTGCTTTTGTTTGTAGTTCACAGGGATAG

mRNA sequence

CAGACCGGAAATTTCCCCTGCTATTCATTCATTGCCATTGCCTAATTCTTCCCATTTCAATTTGTTCTCATCGAGTTTCGATAACATTCGATCATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCGGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCACCTGTTTTACCGGACGCAATTCTGATTTCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAACTCTTCCTGTACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCGTACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCTAAGGATGATGGATTTGTTCTCCTTCATGAGGGATAG

Coding sequence (CDS)

ATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCGGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCACCTGTTTTACCGGACGCAATTCTGATTTCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAACTCTTCCTGTACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCGTACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCTAAGGATGATGGATTTGTTCTCCTTCATGAGGGATAG

Protein sequence

MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEG

Homology

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BLAST of Carg24224 vs. NCBI nr
Match: XP_022935532.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 304.7 bits (779), Expect = 1.9e-79
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSS 60
           MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPPPVLPDAILI SS
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 159

[Close]

BLAST of Carg24224 vs. NCBI nr
Match: XP_022935533.1 (double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 304.7 bits (779), Expect = 1.9e-79
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSS 60
           MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPPPVLPDAILI SS
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 159

[Close]

BLAST of Carg24224 vs. NCBI nr
Match: XP_023526614.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023526615.1 double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.9 bits (777), Expect = 3.2e-79
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSS 60
           MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPP VLPDAILI S+
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPST 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 159

[Close]

BLAST of Carg24224 vs. NCBI nr
Match: XP_022984142.1 (double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 302.0 bits (772), Expect = 1.2e-78
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSS 60
           MVEESGTVEAVPQQQSSFPPDSAPAVVPA+IPVE+SNTPQLESDTRPPPVLP AILI SS
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPALIPVEDSNTPQLESDTRPPPVLPGAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 159

[Close]

BLAST of Carg24224 vs. NCBI nr
Match: XP_022984141.1 (double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 302.0 bits (772), Expect = 1.2e-78
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSS 60
           MVEESGTVEAVPQQQSSFPPDSAPAVVPA+IPVE+SNTPQLESDTRPPPVLP AILI SS
Sbjct: 1   MVEESGTVEAVPQQQSSFPPDSAPAVVPALIPVEDSNTPQLESDTRPPPVLPGAILIPSS 60

Query: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVH 120
           ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQG+PKYRSTVVVDEVH
Sbjct: 61  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVH 120

Query: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Sbjct: 121 YVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 159

[Close]

BLAST of Carg24224 vs. TAIR10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-11
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 66  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPN 125
           S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S  
Sbjct: 3   STDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP 62

Query: 126 TFRNRRAAEQDAARIALEYISKKAK 151
            F NR+AAEQ AA +AL  ++K ++
Sbjct: 63  GFFNRKAAEQSAAEVALRELAKSSE 87

[Close]

BLAST of Carg24224 vs. TAIR10
Match: AT2G28380.1 (dsRNA-binding protein 2)

HSP 1 Score: 47.4 bits (111), Expect = 9.8e-06
Identity = 25/71 (35.21%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137
           +YKN L E  Q+S   LP Y    EG    P++++TV  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 138 ARIALEYISKK 149
           A +AL  +S +
Sbjct: 61  AEVALNALSNR 71

[Close]

BLAST of Carg24224 vs. TAIR10
Match: AT3G26932.1 (dsRNA-binding protein 3)

HSP 1 Score: 46.6 bits (109), Expect = 1.7e-05
Identity = 25/71 (35.21%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137
           +YKN L E  Q+S   LP Y    EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 138 ARIALEYISKK 149
           A +AL  +S K
Sbjct: 61  AEVALSALSSK 71

[Close]

BLAST of Carg24224 vs. TAIR10
Match: AT5G41070.1 (dsRNA-binding protein 5)

HSP 1 Score: 44.3 bits (103), Expect = 8.3e-05
Identity = 23/71 (32.39%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137
           +YKN L E  Q+S   LP Y    EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 138 ARIALEYISKK 149
           A ++L  +S +
Sbjct: 61  AEVSLNVLSSR 71

[Close]

BLAST of Carg24224 vs. Swiss-Prot
Match: sp|O04492|DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 66  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPN 125
           S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S  
Sbjct: 3   STDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP 62

Query: 126 TFRNRRAAEQDAARIALEYISKKAK 151
            F NR+AAEQ AA +AL  ++K ++
Sbjct: 63  GFFNRKAAEQSAAEVALRELAKSSE 87

[Close]

BLAST of Carg24224 vs. Swiss-Prot
Match: sp|Q0DJA3|DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB3 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 36/107 (33.64%), Postives = 60/107 (56.07%), Query Frame = 0


Query: 41  LESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF 100
           ++  + P P+ P+    ++++ AP+ +     +   +++K+ L EY QK+ +  P Y T 
Sbjct: 1   MKKKSAPTPLPPET---ANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTS 60

Query: 101 DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISK 148
            EG    P ++STVV++   Y S   F NR+AAEQ AA +AL  I K
Sbjct: 61  KEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVK 104

[Close]

BLAST of Carg24224 vs. Swiss-Prot
Match: sp|Q0IV63|DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB7 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 44  DTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEG 103
           D  P P+ P+    ++++ AP  +     +   +++K+ L EY QK+ +  P Y TF EG
Sbjct: 2   DMPPTPLPPET---ANTSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEG 61

Query: 104 SQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISK 148
               P ++STVV++   Y S   F NR+AAEQ AA +AL  I K
Sbjct: 62  PSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVK 102

[Close]

BLAST of Carg24224 vs. Swiss-Prot
Match: sp|Q0IQN6|DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-09
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 44  DTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEG 103
           D  P P+ P+    ++++ AP  +     +   +++K+ L EY QK+ +  P Y TF EG
Sbjct: 2   DMPPTPLPPET---ANTSPAPNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEG 61

Query: 104 SQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISK 148
               P ++STVV++   Y S   F NR+AAEQ AA +AL  I K
Sbjct: 62  PSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVK 102

[Close]

BLAST of Carg24224 vs. Swiss-Prot
Match: sp|Q6YW64|DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB4 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 26/74 (35.14%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 79  YKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAA 138
           YK+ L EY Q++   LP+Y T  +G     K++STV+VD   + S    R  + AEQDAA
Sbjct: 39  YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98

Query: 139 RIALEYISKKAKDD 153
           ++A + + ++ + +
Sbjct: 99  KVAYDTLLERKETE 112

[Close]

BLAST of Carg24224 vs. TrEMBL
Match: tr|A0A0A0LAZ4|A0A0A0LAZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 7.1e-51
Identity = 109/158 (68.99%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 2   VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSA 61
           +EESGTVEA   QQS FP DS P VV   IPVENSNT Q + D  PP VLPD + I S+A
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHY 121
                 P  SD TQ+F+YKNHLHEYTQK++I +PVYQT DEGS  +PKYRSTV+VDEVHY
Sbjct: 61  XXXXXXPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           VSPNTFRNRRAAEQDAAR+A EYISKK KDD F+LL E
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of Carg24224 vs. TrEMBL
Match: tr|A0A1S3C4R2|A0A1S3C4R2_CUCME (uncharacterized protein LOC103496837 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.7e-50
Identity = 107/158 (67.72%), Postives = 124/158 (78.48%), Query Frame = 0


Query: 2   VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSA 61
           +E SGTVEA   QQS F  DS P VV   IPV+N +T Q + +  PP VLPD +LI S+A
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEY QK+RI +PVYQT DEGS G+PK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           VSPNTFRNRRAAEQDAARIA EYISKK KDD F+LL E
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of Carg24224 vs. TrEMBL
Match: tr|A0A1S3C485|A0A1S3C485_CUCME (uncharacterized protein LOC103496837 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.7e-50
Identity = 107/158 (67.72%), Postives = 124/158 (78.48%), Query Frame = 0


Query: 2   VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSA 61
           +E SGTVEA   QQS F  DS P VV   IPV+N +T Q + +  PP VLPD +LI S+A
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEY QK+RI +PVYQT DEGS G+PK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           VSPNTFRNRRAAEQDAARIA EYISKK KDD F+LL E
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of Carg24224 vs. TrEMBL
Match: tr|A0A1S3C4M5|A0A1S3C4M5_CUCME (double-stranded RNA-binding protein 4-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.7e-50
Identity = 107/158 (67.72%), Postives = 124/158 (78.48%), Query Frame = 0


Query: 2   VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSA 61
           +E SGTVEA   QQS F  DS P VV   IPV+N +T Q + +  PP VLPD +LI S+A
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEY QK+RI +PVYQT DEGS G+PK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           VSPNTFRNRRAAEQDAARIA EYISKK KDD F+LL E
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of Carg24224 vs. TrEMBL
Match: tr|D7TSR3|D7TSR3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 6.3e-23
Identity = 59/102 (57.84%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 60  SASAPVSSPKPSD--LTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVD 119
           S +A V  P PS   L +  ++KN L EYTQ+S IPLP+YQT +EG Q  PK+RSTV+VD
Sbjct: 2   SEAAKVDCPAPSSTRLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVD 61

Query: 120 EVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
              Y SPNTF +R+AAEQD AR+ALE+ISKK KD+G  L+ E
Sbjct: 62  GATYTSPNTFSHRKAAEQDVARLALEFISKKIKDEGCPLIRE 103

The following BLAST results are available for this feature:

BLAST of Carg24224 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935532.1	1.9e-79	98.11	double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata]	[more]
XP_022935533.1	1.9e-79	98.11	double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata]	[more]
XP_023526614.1	3.2e-79	98.11	double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pep...	[more]
XP_022984142.1	1.2e-78	96.86	double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita maxima]	[more]
XP_022984141.1	1.2e-78	96.86	double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg24224 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09700.1	1.6e-11	38.82	dsRNA-binding domain-like superfamily protein	[more]
AT2G28380.1	9.8e-06	35.21	dsRNA-binding protein 2	[more]
AT3G26932.1	1.7e-05	35.21	dsRNA-binding protein 3	[more]
AT5G41070.1	8.3e-05	32.39	dsRNA-binding protein 5	[more]

BLAST of Carg24224 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O04492\|DRB1_ARATH	2.8e-10	38.82	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE...	[more]
sp\|Q0DJA3\|DRB3_ORYSJ	1.1e-09	33.64	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q0IV63\|DRB7_ORYSJ	1.1e-09	36.54	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q0IQN6\|DRB8_ORYSJ	1.1e-09	36.54	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|Q6YW64\|DRB4_ORYSJ	2.7e-05	35.14	Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of Carg24224 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAZ4\|A0A0A0LAZ4_CUCSA	7.1e-51	68.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G345380 PE=4 SV=1	[more]
tr\|A0A1S3C4R2\|A0A1S3C4R2_CUCME	2.7e-50	67.72	uncharacterized protein LOC103496837 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C485\|A0A1S3C485_CUCME	2.7e-50	67.72	uncharacterized protein LOC103496837 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C4M5\|A0A1S3C4M5_CUCME	2.7e-50	67.72	double-stranded RNA-binding protein 4-like isoform X3 OS=Cucumis melo OX=3656 GN...	[more]
tr\|D7TSR3\|D7TSR3_VITVI	6.3e-23	57.84	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0006g01440 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24224-RA	Carg24224-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 79..146 e-value: 4.9E-13 score: 59.3
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 79..144 e-value: 2.2E-10 score: 41.0
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 78..147 score: 11.553
IPR014720	Double-stranded RNA-binding domain	CDD	cd00048	DSRM	coord: 79..145 e-value: 6.02301E-12 score: 56.5119
None	No IPR available	GENE3D	G3DSA:3.30.160.20		coord: 65..150 e-value: 1.8E-18 score: 68.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 60..159
None	No IPR available	PANTHER	PTHR11207:SF8	SUBFAMILY NOT NAMED	coord: 60..159
None	No IPR available	SUPERFAMILY	SSF54768	dsRNA-binding domain-like	coord: 74..145

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24224	Cla013177	Watermelon (97103) v1	carwmB0166
Carg24224	MELO3C020280	Melon (DHL92) v3.5.1	carmeB0181
Carg24224	ClCG05G011010	Watermelon (Charleston Gray)	carwcgB0168
Carg24224	CmaCh14G008510	Cucurbita maxima (Rimu)	carcmaB0240
Carg24224	CmoCh14G008650	Cucurbita moschata (Rifu)	carcmoB0248
Carg24224	Lsi05G003100	Bottle gourd (USVL1VR-Ls)	carlsiB158
Carg24224	Cp4.1LG03g05950	Cucurbita pepo (Zucchini)	carcpeB0257
Carg24224	MELO3C020280.2	Melon (DHL92) v3.6.1	carmedB0185
Carg24224	Cla97C05G093280	Watermelon (97103) v2	carwmbB0181
Carg24224	Bhi01G001352	Wax gourd	carwgoB0227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24224	Silver-seed gourd	carcarB213
Carg24224	Cucurbita maxima (Rimu)	carcmaB0241
Carg24224	Cucurbita moschata (Rifu)	carcmoB0249
Carg24224	Cucurbita pepo (Zucchini)	carcpeB0256