Cp4.1LG03g05950 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g05950
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 4489536 .. 4492057 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCATCTGTTTTACCGGACGCAATTCTGATTCCGAGTACGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCGTAAGTCTATGGTATTGTTGTCTATCATTGTTTTTTAGGCGTTTTGATTGTTACGGTTTAGTGNAATCTCCTCACTGACACACTACTCGGTGTCTGGCTCTGATACTATTTGTAACAGCCCAAACTCACCGCTGGTAGATATTGTCCACTTTGGCCCATTACATATCGCCATCAACCTCACGGTTTTAAAACATGTCGACTATGGAGAAGTTTCCACACTCTAATAAAAAGTGCTTCATTCCCCTCTCTAACCAACGTGGGATCTCACAAATATTAGCAGGTCTCATCGACTTATTATTTGACATCAATAAGAATTGACTTTCCAAATTTAATTCCCAGCATTTACAATTTATTTCACACTCCACAAACTAATTATAAGGCTTCTCCAAGCAAGTTTCACTTGGTAAATGTTAGGAATCACGACTCTCCACAATAGTATGATATTGTCCACTTTAAGTATAAGCTCTTATGGATTTGCTTTGGGCTTCCCAAAAAACCAATGGAGATGTATGCCTTACTTATAAACCCATGATCATTCCCTAAATTAGCCAATATGGACTTCCTCTCAAAAATTCTCAACAATTGTATTGACATAGCTAAATTAAGGGCATGACTATGATACCATGTTAGGAATAACTAACCTCCACAATGGTATGAGCTCTCAATGATATTCTACACTAAATTCTAATAAATTCACTTCACAGATTAACAGAACACCCAATCTTAGCTTGAAATCACAACTAAAGAAAATGACAACAAAACAAAAGCCAAAACAGATCAAATCCAACAATCCATTAGAATGGAGTTTACCTTTGACTTTCAAATGGGACTTAGAAACTACACGCGACCGCAAAAACCCAGAAGATTTCACCACCCATTGCCTGTGTCTCAAAGATTCATGCGCAACAGTAGGAAACCCATGGAAACAGAATGCGCCAGAATGAAGAGCCATCGACCCAAAAAAAGATGCAAGAACTTGAAATTAAGTATCAAACACTGGATCAGCGAAACGTGGAACAGAGCAATTCCCACCGAATTCAAAATTTAGGGTTCTAAAAAACCGATTGGGGATCAGAATTGACTGATTACGAAATGGATCGATGGGAAAATCGAAGAAGAAGAAGGTTAAATAATGGTTTGGAGTGAGGAACGAGGAGTTGCAGAAATGCAAGGAGTGTTTAGCGGTAAAGACGTTTGTCATTAACTGTGGTGGGGGCTCTTCGGGACAGCCATTGTTTCAGACGACAGATGGATCAGTAAGGGAACACTTATTTTTTCATTTTATTCTTTTAAATTTTAAAAAAAAAATATATATATATATATTTATAAATAATTTTCGACCTTTCAATTTTTTAAACTGATTTAATTATATATTTATAAATATCGAAATATTTATTGTATTATAATTACTCGAAATTTTCCCAATAATTTAAATTAAAGTCATTTACATTTATGAATGCACGATGTTGTTTAAGAACTACTAATCAATGAACTAATTAAATTTAAATTCATTTCATTTAATAATTTTTACTTACAGTTAAATTTTCTTTAATTCACCTCAAATTTTAATAATAATAACAACGAAAGTCCCGTTAACTAATTTAGAGAATGTTCATGAGTTTATAATTTTAGAGAATGTTCATGAGTTTATAATTAAAAAATATCTAGACAGTCTATTATCATATTTTTTAAATGAATTTTTTATATTAAAATTAATTTAAGTGCAAGTAGAATTGATGTAAGAAGCAACCTTTTTTTACGTAAGTTAGAATCTGGTCTTATTACCTAACGTCATCACTATCTCATCCTAATTGGGAGGATAAAAAACCCTCGCCCACCCTTCACAGTCCACAGACCGGAAATTTCCCCTGCTGTTCATTCATTGCCATTGCCCAATTCTTCCCATTTCAATTTGTTCTCATCGAGTTTCGATAACATTCGATCATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCATCTGTTTTACCGGACGCAATTCTGATTCCGAGTACGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCGTAAGTCTATGGTATTGTTGTCTATCATTGTTTTTTAGGCGTTTTGATTGTTACGGTTTAGTGCTTTTATTTGAGCTAATGCTGCTGTTAGATGATGGATTTCCTCTTCATTTGGTGCATGAAGTTTTCTAG

mRNA sequence

ATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCATCTGTTTTACCGGACGCAATTCTGATTCCGAGTACGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCATCTGTTTTACCGGACGCAATTCTGATTCCGAGTACGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCATGATGGATTTCCTCTTCATTTGGTGCATGAAGTTTTCTAG

Coding sequence (CDS)

ATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCATCTGTTTTACCGGACGCAATTCTGATTCCGAGTACGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCATCTGTTTTACCGGACGCAATTCTGATTCCGAGTACGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCATGATGGATTTCCTCTTCATTTGGTGCATGAAGTTTTCTAG

Protein sequence

MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPSTASAPVSSPKPSDLTQSGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPSTASAPVSSPKPSDLTHDGFPLHLVHEVF
Homology
[Close]
BLAST of Cp4.1LG03g05950 vs. TrEMBL
Match: A0A0A0LAZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-12
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 1 

Query: 2  VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPSTA 61
          +EESGTVEA   QQS FP DS P VV   IPVENSNT Q + D  PPSVLPD + IPS A
Sbjct: 1  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62 SAPVSSPKPSDLTQ 76
           AP+ SP  SD TQ
Sbjct: 61 PAPIPSPNLSDHTQ 74

[Close]
BLAST of Cp4.1LG03g05950 vs. NCBI nr
Match: gi|700202704|gb|KGN57837.1| (hypothetical protein Csa_3G345380 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-12
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 1 

Query: 2  VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPSTA 61
          +EESGTVEA   QQS FP DS P VV   IPVENSNT Q + D  PPSVLPD + IPS A
Sbjct: 1  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62 SAPVSSPKPSDLTQ 76
           AP+ SP  SD TQ
Sbjct: 61 PAPIPSPNLSDHTQ 74

[Close]
BLAST of Cp4.1LG03g05950 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-12
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 1 

Query: 2  VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPSTA 61
          +EESGTVEA   QQS FP DS P VV   IPVENSNT Q + D  PPSVLPD + IPS A
Sbjct: 1  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62 SAPVSSPKPSDLTQ 76
           AP+ SP  SD TQ
Sbjct: 61 PAPIPSPNLSDHTQ 74

[Close]
BLAST of Cp4.1LG03g05950 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-12
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 1 

Query: 2  VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPSTA 61
          +EESGTVEA   QQS FP DS P VV   IPVENSNT Q + D  PPSVLPD + IPS A
Sbjct: 1  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62 SAPVSSPKPSDLTQ 76
           AP+ SP  SD TQ
Sbjct: 61 PAPIPSPNLSDHTQ 74

[Close]
BLAST of Cp4.1LG03g05950 vs. NCBI nr
Match: gi|778680848|ref|XP_011651406.1| (PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 6.5e-12
Identity = 47/74 (63.51%), Postives = 51/74 (68.92%), Query Frame = 1 

Query: 2  VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPSTA 61
          +EESGTVEA   QQS FP DS P VV   IPVENSNT Q + D  PPSVLPD + IPS A
Sbjct: 1  MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62 SAPVSSPKPSDLTQ 76
           AP+ SP  SD TQ
Sbjct: 61 PAPIPSPNLSDHTQ 74

[Close]
BLAST of Cp4.1LG03g05950 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 42/74 (56.76%), Postives = 49/74 (66.22%), Query Frame = 1 

Query: 2  VEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPSVLPDAILIPSTA 61
          +E SGTVEA   QQS F  DS P VV   IPV+N +T Q + +  PPSVLPD +LIPS A
Sbjct: 1  MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 62 SAPVSSPKPSDLTQ 76
           AP+ SP  SD TQ
Sbjct: 61 PAPIPSPNLSDPTQ 74

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g05950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g05950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAZ4_CUCSA4.5e-1263.51Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1[more]
BLAST of Cp4.1LG03g05950 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g05950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202704|gb|KGN57837.1|6.5e-1263.51hypothetical protein Csa_3G345380 [Cucumis sativus][more]
gi|449464150|ref|XP_004149792.1|6.5e-1263.51PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus][more]
gi|778680845|ref|XP_011651405.1|6.5e-1263.51PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus][more]
gi|778680848|ref|XP_011651406.1|6.5e-1263.51PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus][more]
gi|659114470|ref|XP_008457067.1|5.2e-0956.76PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003725 double-stranded RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g05950.1Cp4.1LG03g05950.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g05950CmaCh14G008510Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g05950CsaV3_3G021570Cucumber (Chinese Long) v3cpecucB0749
Cp4.1LG03g05950Bhi01G001352Wax gourdcpewgoB0786
Cp4.1LG03g05950Carg24224Silver-seed gourdcarcpeB0257
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g05950Cucurbita pepo (Zucchini)cpecpeB449
Cp4.1LG03g05950Cucumber (Gy14) v1cgycpeB0532
Cp4.1LG03g05950Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g05950Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g05950Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g05950Wild cucumber (PI 183967)cpecpiB602
Cp4.1LG03g05950Cucumber (Chinese Long) v2cpecuB600
Cp4.1LG03g05950Bottle gourd (USVL1VR-Ls)cpelsiB511
Cp4.1LG03g05950Watermelon (Charleston Gray)cpewcgB560
Cp4.1LG03g05950Watermelon (97103) v1cpewmB614
Cp4.1LG03g05950Melon (DHL92) v3.5.1cpemeB586
Cp4.1LG03g05950Cucumber (Gy14) v2cgybcpeB397
Cp4.1LG03g05950Melon (DHL92) v3.6.1cpemedB694
Cp4.1LG03g05950Silver-seed gourdcarcpeB1073