CmaCh14G008510 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G008510
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Double-stranded RNA-binding protein 4
Location	Cma_Chr14 : 4351954 .. 4356715 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCATCACTATCTCGTCCTAAATTGGAAGGATTAAAAACCCTCGCCCACCCTTCACAGTCCACAGACCGGAAATTTCCCCTGCCATTGCCTAATTCTTCCCATTTCAATTTGTTCTCATCGAGTTTCGATAACAGTCGATCATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTCTTATTCCGGTGGAAGACTCCAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCACCTGTTTTACCGGGCGCAATTCTGATTCCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCGTAAGTCTATGGTATTGTTGCCTGTCATTGTTTTTTAGGCGTTTTGATTGTTACGGTTTAGTGTTTTTATTTGAGCTAATTCTGCTGTTAGATGATGGATTTCCTCTTCTTTTGGTGCATGAAGTTTTCTAGCTGGTTTTTTGTTTCTGTTATAGAGAGAAGCAATTGCATTCCTTCTGTGAGTTCGCGTGGTGCCTCTCTGTGTGTTGAAAAGATAACTCTGTTTTTCTGTATGTATCTACGAAGAGGTCCTGAGAATTCAATCTTAAGTTGCTATGTTTACTTTCATTTTCTTTTCACAATCTTTGGACGCTGAATTATTTTACGAGTTTGAATACTGGCAACTGTGTGGTGATGATCTAGGGATTCCTTCTTTGTTCAGTTAAAAAAAATTGGTGGAAAAATTCTCTAGAAGAAATGTTCTATGTGGTTCTTAGCGCTTCTTAATTGAATCCTAGCCTATCACCTTGCTCTCGATCCCTAGTGGTGTGGCATTCGCGAAAAGAATAGTGAGATTTAAATCACCTATTTATTTGTATTTCCTATTTACTTTTCCTACACTCTCTGGTGTGCTCGATGAGAGATGGATAAACTAAGGACTAATCACTTCAGGCACTAGCTGGTCCTCATTGGAGCAACAAACCCGAATTCTGTGGGGGTTTACTGTCATAGCTCTCTGTTTTGATCTGACAATGAGGACTCTTTCTTTGAAGACCAGTTTCTTGACAATCCTGTGGTGGGTTTAACTCGTAAGTAACCAGATAAGCCTCGAAGAAGTGAAAGATAAATGGGAGGATGTTCTGAATTTTGATCATTTTATTATTGTTCCTTTTCTTTTATATCTCTCGTGATTTTTCTATTTTCTGTGATTAAAGATGTAGGAGCCTTTTCTTATAATTTCTTTTGCTAGTTCTGCATCTTGGTTTGGCACTCAGGGCTTTGTTCTTGAATGGCCTTTTCCTACTTCCATTGCCCTCAACGAAATTAATAAAAAAGAAAGAAAAAAAAGACGAAGTCATTTACTGAAGTGGAGAGTTTTGCAATATTGGACGTGTCTGGGTACTTATCTGATCTGACGTTGCTGATTGGGGACTTGTGTAATTTTCCACAGCATGGACTCTTCTAATGTCCCGCCTTTCTCTTTCGGGCTGTAATTTGATTATTTATCTTTTAATCTAGTTGCCTAATAAAAGTAAAGGTTCCCCACAGTTCTAGTGTGCAGAAATTTGTTATTTGGTGGATCTTTGTTTTCTTGATAAGAACAGAAAAGAAATTAATGTTATGGCTTTCTTTTACTTGGTTTTGCAGAACTCTTCCTATACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCATACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCCAAGGATGATGGATTTGTTCTCCTTCATGAGGTATGACTTATATGATGAGACTGAAACTTGTTTGGTGGCCTTTGATTTTTAGCATGCTTGTTTCTTTATTTATTTATTCTTATTTTAGTGCAACATTGTGGGGGACATTTAAACCTGCTGAACTTAATGGAAGAGATAGATGCTTTGACCACTATATTATGCTCATGTTGGCTATATTTTTGCTTGTTTAGGATTATAGATGCAATTCAATGATGAGATTTTCTACCTAGACTTTCGGTTTGTTACAAATAAGTTTTTATGTATGGAGATTACTTTTTGTAATTTTCTTTCGCAATGTGTACAATAACTTATTTGAACCCAACAGAAACAGTAATTTCTACCTGATATATTTGTTATTGTTCTTGGATGAAAAAATCTTAGTAATAATTGCATGTAATCACTTAAGTTGTATAAGATTTCTCATAGTCATAGTCATCGACATTCTCGAAGGTTGGAATTTATCTAATTGATTTTAGTGATAAGGCATTTAGTCTGTCTGAATAAGAAGTTCAGAAATGATGCCTTCGGGAATGAGGTTGTGAGACACTGTTTGCTTTTGTTTGTAGTTCACAGGGATAGGATTCAAATGTATGAGAGAGATAAGCGCAAAAGAATTATAAAAGGGGCTCCAATTGCTAACGTCCTTAGTGATAGAAGTCCAATTGAGACGTTGAACCTAGCCATGCTCTTACACCCATTCCCAAGGACATTCCTTTTCAAGACTCCCCTATTTCTCTCGAGCCAAATGTTCCATAAATTCACAAAAGTAAGCTGTCTGTCAAAAGAAGTCCCTCTATTGCATGCTTATAATTTTGATTGTGCCTTATACTTATTTTCTTATTGGTCTTTAATGTTCTGAATGTTTGTTCATGCTGTGCTATGATATTGATTATTGTGTACCAGCACTTCACTAATGGTATTAAATATTGACATGTTGAAAAGAAAACATGTATATATTTGATTGCTATACTTTATATTGACTTCGAATCTGATATACAAACTATGTCATTTGTTCTTATTTCAGGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACGAAACAACATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCACTTCATGGTATTTAATTGTTGGAAACAACTTCTGAATTATTTCAAAATACTAGGTGCCTTGTCAAAGTTGCTTTTATTAAATGATAATAATAATAGTTATTGCTACTATTATTTTGTAGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCTCAAATTCAACCGAAATATATGCCTGAAAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGGCATGTGGTGCAATTTCAGAGATTTGTCCAACAATATCTCATCTTGGACCTGAACTTAGATCAATAAAACCGGTGGCATCGTCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGACTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGTAAGTCTTCCTCCATGATCTTTTTTTCATGAAACTACATCTAACTTTATAATGTATCTTCTCGTTGTTTAGGGTATTACATAATTGTTTACTGTAAACACCAGTCTTGTTACAACTAGAGCTCTTCAACTTGCACATTCATGTTGACGACAAATTTCTGCATTAAGACTACTAGGCTGCAACTTCTTTCAATGAAAAGTTTATTTATTATTACTCTATTTTGAAGTGTTTGATATCCTTTCATTGTGGGATGTAGATTTAAATCATGGTAGTCATCAAGGATACTATAATATCTTACAACTTTCTTAATACTCCATTTAGTATCTGGTAAGATTTGATAGTTATGCCTATGACCAGTAGAGATTTAACTTAACTTAATCTGGATGCTCACAATTGTTAAAAATGTAAAGGAAACTGAGGGTCCTTGGTTTTGTGTATGATATATGAGATAAGTTGAAGGGAAGTTGTTATTGTTTTGTGCTACATGATAAGAGACATGGCATGTCCCCTCAAGAGTCCTGCGATGTTTTACACGAATAATATTAATTTGCGCTTATTACGTATAAGTTATTTCAATAGTATAACCAAATCTTCTTTTGCTAAAATGAGCAGGGTGGCAACGGGACGAGTCAAACTGCTCCTTGCTCCATAGCTCAATGACTGTAAAGTATCCTGTATTATAAGTGCTCCTCTGCTTCAAAGGTAACATTTAAGAGTAGTTTTGAGTATGAATACCATGAATTCGAGATTCCGCTTCTGTTGTAGGTCTATGTTTGACATCGACCACGCGAGTACACGATCAGTCAGTTCATATGTTATTATAAAATATAGTGGTAGCTTTGTAGGCTGTCATTAGGAGCCAAAAAAAAAAAAAAAACATCACGGATTGGTTTGGATACTCATAGAATTAAGGTTAAGCTTCGTGGCTCAGTTTAATTGTTTATATGATGCATTGAAGTAATATTTGTTAATGCAGGGGTTTGAGATAATATTACATACGGCCGTTATTACCTTATCTTTTAGATATAAAAATTAGATATAATGATATACTAGTTTTAAAGTTTAGAGGC

mRNA sequence

CGTCATCACTATCTCGTCCTAAATTGGAAGGATTAAAAACCCTCGCCCACCCTTCACAGTCCACAGACCGGAAATTTCCCCTGCCATTGCCTAATTCTTCCCATTTCAATTTGTTCTCATCGAGTTTCGATAACAGTCGATCATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTCTTATTCCGGTGGAAGACTCCAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCACCTGTTTTACCGGGCGCAATTCTGATTCCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAACTCTTCCTATACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCATACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCCAAGGATGATGGATTTGTTCTCCTTCATGAGATGCAATTCAATGATGAGATTTTCTACCTAGACTTTCGGGATAGGATTCAAATGTATGAGAGAGATAAGCGCAAAAGAATTATAAAAGGGGCTCCAATTGCTAACGTCCTTAGTGATAGAAGTCCAATTGAGACGTTGAACCTAGCCATGCTCTTACACCCATTCCCAAGGACATTCCTTTTCAAGACTCCCCTATTTCTCTCGAGCCAAATGTTCCATAAATTCACAAAAGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACGAAACAACATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCACTTCATGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCTCAAATTCAACCGAAATATATGCCTGAAAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGGCATGTGGTGCAATTTCAGAGATTTGTCCAACAATATCTCATCTTGGACCTGAACTTAGATCAATAAAACCGGTGGCATCGTCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGACTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGGTGGCAACGGGACGAGTCAAACTGCTCCTTGCTCCATAGCTCAATGACTGTAAAGTATCCTGTATTATAAGTGCTCCTCTGCTTCAAAGGTAACATTTAAGAGTAGTTTTGAGTATGAATACCATGAATTCGAGATTCCGCTTCTGTTGTAGGTCTATGTTTGACATCGACCACGCGAGTACACGATCAGTCAGTTCATATGTTATTATAAAATATAGTGGTAGCTTTGTAGGCTGTCATTAGGAGCCAAAAAAAAAAAAAAAACATCACGGATTGGTTTGGATACTCATAGAATTAAGGTTAAGCTTCGTGGCTCAGTTTAATTGTTTATATGATGCATTGAAGTAATATTTGTTAATGCAGGGGTTTGAGATAATATTACATACGGCCGTTATTACCTTATCTTTTAGATATAAAAATTAGATATAATGATATACTAGTTTTAAAGTTTAGAGGC

Coding sequence (CDS)

ATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCAGCTCCGGCTGTTGTTCCAGCTCTTATTCCGGTGGAAGACTCCAATACTCCTCAGCTTGAATCGGATACTCGTCCTCCACCTGTTTTACCGGGCGCAATTCTGATTCCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAACTCTTCCTATACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCATACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCCAAGGATGATGGATTTGTTCTCCTTCATGAGATGCAATTCAATGATGAGATTTTCTACCTAGACTTTCGGGATAGGATTCAAATGTATGAGAGAGATAAGCGCAAAAGAATTATAAAAGGGGCTCCAATTGCTAACGTCCTTAGTGATAGAAGTCCAATTGAGACGTTGAACCTAGCCATGCTCTTACACCCATTCCCAAGGACATTCCTTTTCAAGACTCCCCTATTTCTCTCGAGCCAAATGTTCCATAAATTCACAAAAGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACGAAACAACATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTTGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCACTTCATGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCTCAAATTCAACCGAAATATATGCCTGAAAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGGCATGTGGTGCAATTTCAGAGATTTGTCCAACAATATCTCATCTTGGACCTGAACTTAGATCAATAAAACCGGTGGCATCGTCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGACTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGGTGGCAACGGGACGAGTCAAACTGCTCCTTGCTCCATAG

Protein sequence

MVEESGTVEAVPQQQSSFPPDSAPAVVPALIPVEDSNTPQLESDTRPPPVLPGAILIPSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEMQFNDEIFYLDFRDRIQMYERDKRKRIIKGAPIANVLSDRSPIETLNLAMLLHPFPRTFLFKTPLFLSSQMFHKFTKDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHVTTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVASSPSERLPIESVPSTSEEPVGDRATGTKKRSKNKRKARKKLCMENQVATGRVKLLLAP

Homology

[Close]

BLAST of CmaCh14G008510 vs. Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-10
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 66  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPN 125
           S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S  
Sbjct: 3   STDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP 62

Query: 126 TFRNRRAAEQDAARIALEYISKKAK 151
            F NR+AAEQ AA +AL  ++K ++
Sbjct: 63  GFFNRKAAEQSAAEVALRELAKSSE 87

[Close]

BLAST of CmaCh14G008510 vs. Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.1e-10
Identity = 56/186 (30.11%), Postives = 96/186 (51.61%), Query Frame = 1


Query: 228 SQMFHKFTKDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDIS 287
           + +F    +D++  KSIL EYT K    +P Y+  + EGSV  + S++ F G  YTG  +
Sbjct: 116 TDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTPYVSSVSFAGHTYTGGAA 175

Query: 288 RSKKEAEQLAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMM-----QKVKDSHPSQI 347
           R+KK+AEQ AARAA+ SL       +  ++A+I+ SK +L   +      K  DS+P+  
Sbjct: 176 RNKKDAEQKAARAAVKSL----LATNYTSMAKIVRSKEKLIRAISPSGYNKGIDSNPTN- 235

Query: 348 QPKYMPENTVEHVTTTVNE--DKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVA 407
             K +P   ++    ++ +  D E++   +   +         P ++   P++R     A
Sbjct: 236 --KKLPFAPIKFTPPSIFKLYDGEIDMLSVPQAL-------FAPLVAAEEPKVRPAAEPA 287

[Close]

BLAST of CmaCh14G008510 vs. Swiss-Prot
Match: DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.7e-09
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 47  PPPVLPGAILIPSSASAPVSSPKPSDLT------QLFLYKNHLHEYTQKSRIPLPVYQTF 106
           PP  LP     P +A+   +SP P+  T        +++K+ L EY QK+ +  P Y TF
Sbjct: 4   PPTPLP-----PETAN---TSPAPNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTF 63

Query: 107 DEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISK 148
            EG    P ++STVV++   Y S   F NR+AAEQ AA +AL  I K
Sbjct: 64  KEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVK 102

[Close]

BLAST of CmaCh14G008510 vs. Swiss-Prot
Match: DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.7e-09
Identity = 42/107 (39.25%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 47  PPPVLPGAILIPSSASAPVSSPKPSDLT------QLFLYKNHLHEYTQKSRIPLPVYQTF 106
           PP  LP     P +A+   +SP P+  T        +++K+ L EY QK+ +  P Y TF
Sbjct: 4   PPTPLP-----PETAN---TSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTF 63

Query: 107 DEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISK 148
            EG    P ++STVV++   Y S   F NR+AAEQ AA +AL  I K
Sbjct: 64  KEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVK 102

[Close]

BLAST of CmaCh14G008510 vs. Swiss-Prot
Match: DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-08
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = 1


Query: 41  LESDTRPPPVLPGAILIPSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF 100
           ++  + P P+ P      +++ AP+ +     +   +++K+ L EY QK+ +  P Y T 
Sbjct: 1   MKKKSAPTPLPPETA---NTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTS 60

Query: 101 DEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISK 148
            EG    P ++STVV++   Y S   F NR+AAEQ AA +AL  I K
Sbjct: 61  KEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVK 104

[Close]

BLAST of CmaCh14G008510 vs. TrEMBL
Match: A0A0A0LCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.9e-71
Identity = 156/215 (72.56%), Postives = 173/215 (80.47%), Query Frame = 1


Query: 237 DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQL 296
           DLMLCKSILSEYT KM L+RP+YTTK ++GSV  FQSTLVFDGVVYT D+ R+KKEAEQL
Sbjct: 99  DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQL 158

Query: 297 AARAAILSLH-DAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHV 356
           AARAAILSLH DA NPKSQK L +IIASKVR HAM+QKVKDS+ SQ QPK MPENTVE V
Sbjct: 159 AARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERV 218

Query: 357 TTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVASSPSERLPIESVPST 416
             TVNE KE+  A+LD  + CGAISE CPT S   PE  + KP  SSP  RLPIE V ST
Sbjct: 219 AMTVNEGKELKDAVLDGGMVCGAISEACPT-SQFQPEFSATKPDGSSPLMRLPIEFVRST 278

Query: 417 SEEPVGDRAT-GTKKRSKNKRKARKKLCMENQVAT 450
            EEPVG  AT G+K++SKNKRKARKKLCMEN+VAT
Sbjct: 279 LEEPVGYHATIGSKRKSKNKRKARKKLCMENRVAT 312

[Close]

BLAST of CmaCh14G008510 vs. TrEMBL
Match: A0A0A0LAZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.3e-53
Identity = 111/160 (69.38%), Postives = 128/160 (80.00%), Query Frame = 1


Query: 2   VEESGTVEAVPQQQSSFPPDSAPAVVPALIPVEDSNTPQLESDTRPPPVLPGAILIPSSA 61
           +EESGTVEA   QQS FP DS P VV   IPVE+SNT Q + D  PP VLP  + IPS+A
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEYTQK++I +PVYQT DEGS  +PKYRSTV+VDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEMQ 162
           VSPNTFRNRRAAEQDAAR+A EYISKK KDD F+LL E++
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVR 160

[Close]

BLAST of CmaCh14G008510 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-27
Identity = 94/218 (43.12%), Postives = 125/218 (57.34%), Query Frame = 1


Query: 236 KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 295
           +D + CKSIL+E+ VKM+L++P YTT Q EG +P+F S+LVF+GV YTGD  R+KKEAEQ
Sbjct: 103 EDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQ 162

Query: 296 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHV 355
           LAAR  ILS+   GN  S   L+EII SKV+L+A + +VKD  PS I    +P      +
Sbjct: 163 LAARTVILSI--LGNSGSGTLLSEIIKSKVKLYAALHRVKD--PSYIHTGILPIGLTSGI 222

Query: 356 TTTVNEDKEV---NGAILDNVVACGAISEI--CPTISHLGPELRSIKPVASSPSERLPIE 415
                ++ EV      +L   V+     ++   P       EL   KP  SS     PI 
Sbjct: 223 PPCKGKEVEVAPGTDQLLPTAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSSEVIAPPIS 282

Query: 416 SVPSTSEEP-VGDRATGTKKRSKNKRKARKKLCMENQV 448
            VPS  E+P V    TG K+  KNK+KA KKL  + Q+
Sbjct: 283 FVPSVFEQPLVVSPTTGRKRNRKNKKKANKKLRTDAQL 316

[Close]

BLAST of CmaCh14G008510 vs. TrEMBL
Match: U5GC64_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14370g PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.2e-24
Identity = 92/232 (39.66%), Postives = 128/232 (55.17%), Query Frame = 1


Query: 237 DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQL 296
           D + CKSIL+E+ VK++ ++P Y T Q  G +P+F STLVFDGV YTGD  R+KKEAEQL
Sbjct: 221 DTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLVFDGVSYTGDAGRNKKEAEQL 280

Query: 297 AARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENT-VEHV 356
           AARA ILSL   GN  S K L EII SK +L+A + +VKD  PS  QP  +P    V H 
Sbjct: 281 AARAVILSL--IGNSGSSKILYEIIKSKSKLYAALDRVKD--PSHSQPNIVPVAVKVGHC 340

Query: 357 T-TTVNEDKEVNGAILDNVVACGA-ISEICPTISHLGPE------------LRSIKPVAS 416
           + TTV++++EV+ A++ +     A I  +   + H                +R   PV++
Sbjct: 341 SETTVDQEQEVSTAVVRDAAPVSANIVPVAVKVGHCSETTVDQEQEVSTAVVRDAVPVSA 400

Query: 417 SP-----------SERLPIESVPSTSEEP--VGDRATGTKKRSKNKRKARKK 441
            P             + P   +   SE+P  V   ++  KKR KNK+K  K+
Sbjct: 401 IPPAASGMHPSHHDSKRPRPDLHPVSEQPLVVDFGSSSAKKRRKNKKKDNKE 448

[Close]

BLAST of CmaCh14G008510 vs. TrEMBL
Match: A0A0J8D2D8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g009890 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 96/274 (35.04%), Postives = 146/274 (53.28%), Query Frame = 1


Query: 58  PSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDE-GSQGIPKYRSTVVV 117
           PSS+   +S  +      L L+K+ LH +T ++R P PVY T +E G Q +PK+RSTV V
Sbjct: 8   PSSSPVVLSEQQQQHQNNL-LWKDRLHVFTCRARKPAPVYHTINEAGPQDVPKFRSTVKV 67

Query: 118 DEVHYVSPNTFRNRRAAEQDAARIALEYISKK---AKDDGFVLLHEMQFNDEIFYLDFRD 177
           D   Y   NTF +++AAE+D A++ALE I KK    ++DG          D I  + F+ 
Sbjct: 68  DGETYSCLNTFSSKKAAEKDVAKVALEGICKKMGWVEEDG----------DTILQVHFKF 127

Query: 178 RIQMYERDKRKRIIKGAPIANVLSDRSPIETLNLAMLLHPFPRTFLFKTPLFLSSQMFHK 237
           +   Y+ D    I   A   +  S R   E  N+  L          +  L  SS++  K
Sbjct: 128 K---YKSDSGTPIGTSAIKVDTRSSRQAGELRNVVALTPS-------EAELSASSELVSK 187

Query: 238 FTKDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEA 297
              D +  KSIL ++  KM++K+P Y T + +    +F S LV +G++YTG+ +  K+EA
Sbjct: 188 LNNDKV--KSILHKFAAKMNMKKPKYETVRVKQPSQVFTS-LVLNGMIYTGEPTNRKEEA 247

Query: 298 EQLAARAAILSLHDAGNPKSQKTLAEIIASKVRL 328
           E+LAARAAIL +    N   +  L +I+ S+ +L
Sbjct: 248 EKLAARAAILYI--LVNSGLRMHLLKIVESEAKL 255

[Close]

BLAST of CmaCh14G008510 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-11
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 66  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPN 125
           S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S  
Sbjct: 3   STDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP 62

Query: 126 TFRNRRAAEQDAARIALEYISKKAK 151
            F NR+AAEQ AA +AL  ++K ++
Sbjct: 63  GFFNRKAAEQSAAEVALRELAKSSE 87

[Close]

BLAST of CmaCh14G008510 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 299.3 bits (765), Expect = 1.2e-77
Identity = 204/449 (45.43%), Postives = 248/449 (55.23%), Query Frame = 1


Query: 2   VEESGTVEAVPQQQSSFPPDSAPAVVPALIPVEDSNTPQLESDTRPPPVLPGAILIPSSA 61
           +EESGTVEA   QQS FP DS P VV   IPVE+SNT Q + D  PP VLP  + IPS+A
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEYTQK++I +PVYQT DEGS  +PKYRSTV+VDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEMQFNDEIFYLDFRDRIQMYERD 181
           VSPNTFRNRRAAEQDAAR+A EYISKK KDD F+LL E     +    ++ D++ +    
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGL---- 180

Query: 182 KRKRIIKGAPIANVLSDRSPIETLNLAMLLHPFPRTFLFKTPLFLSSQMFHKFTKDLMLC 241
                              PI T       H       F++ L     +   +T DL   
Sbjct: 181 -----------------ERPIYTTK-----HNQGSVAFFQSTLVFDGVV---YTSDLGRT 240

Query: 242 KSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAA 301
           K    +   + ++         H+ + P  Q  L        GDI  SK     +   A 
Sbjct: 241 KKEAEQLAARAAI------LSLHDATNPKSQKAL--------GDIIASK-----VRFHAM 300

Query: 302 ILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHVTTTVNE 361
           +  + D+   + Q                              K MPENTVE V  TVNE
Sbjct: 301 LQKVKDSNFSQFQP-----------------------------KSMPENTVERVAMTVNE 360

Query: 362 DKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVASSPSERLPIESVPSTSEEPVG 421
            KE+  A+LD  + CGAISE CPT S   PE  + KP  SSP  RLPIE V ST EEPVG
Sbjct: 361 GKELKDAVLDGGMVCGAISEACPT-SQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVG 371

Query: 422 DRAT-GTKKRSKNKRKARKKLCMENQVAT 450
             AT G+K++SKNKRKARKKLCMEN+VAT
Sbjct: 421 YHATIGSKRKSKNKRKARKKLCMENRVAT 371

[Close]

BLAST of CmaCh14G008510 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 2.6e-77
Identity = 165/215 (76.74%), Postives = 179/215 (83.26%), Query Frame = 1


Query: 236 KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 295
           +DL+LCKSILSEYT KM L+RP+YTTK H+GSVP+FQSTLVFDGVVYT D+SR+KKEAEQ
Sbjct: 158 EDLILCKSILSEYTDKMGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQ 217

Query: 296 LAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHV 355
           LAARAAILSLHDA N KSQKTLA+IIASKVR HAM+QKVKDSH SQIQPK MPENTVE V
Sbjct: 218 LAARAAILSLHDAINIKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERV 277

Query: 356 TTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVASSPSERLPIESVPST 415
             TVNEDK V  A+ D+ V CGAISE CPT S   PE  S KP  SSP  RLPIE VPST
Sbjct: 278 AMTVNEDKNVKDAVSDSGVVCGAISEACPT-SLFRPEFSSTKPEGSSPLVRLPIEFVPST 337

Query: 416 SEEPVGDRA-TGTKKRSKNKRKARKKLCMENQVAT 450
            E PVGD A TG+K+RSKNKRKARKKLCMEN VAT
Sbjct: 338 LEVPVGDHATTGSKRRSKNKRKARKKLCMENGVAT 371

[Close]

BLAST of CmaCh14G008510 vs. NCBI nr
Match: gi|659114468|ref|XP_008457066.1| (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 6.4e-76
Identity = 165/216 (76.39%), Postives = 179/216 (82.87%), Query Frame = 1


Query: 236 KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 295
           +DL+LCKSILSEYT KM L+RP+YTTK H+GSVP+FQSTLVFDGVVYT D+SR+KKEAEQ
Sbjct: 158 EDLILCKSILSEYTDKMGLERPIYTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQ 217

Query: 296 LAARAAILSLH-DAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEH 355
           LAARAAILSLH DA N KSQKTLA+IIASKVR HAM+QKVKDSH SQIQPK MPENTVE 
Sbjct: 218 LAARAAILSLHEDAINIKSQKTLADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVER 277

Query: 356 VTTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVASSPSERLPIESVPS 415
           V  TVNEDK V  A+ D+ V CGAISE CPT S   PE  S KP  SSP  RLPIE VPS
Sbjct: 278 VAMTVNEDKNVKDAVSDSGVVCGAISEACPT-SLFRPEFSSTKPEGSSPLVRLPIEFVPS 337

Query: 416 TSEEPVGDRA-TGTKKRSKNKRKARKKLCMENQVAT 450
           T E PVGD A TG+K+RSKNKRKARKKLCMEN VAT
Sbjct: 338 TLEVPVGDHATTGSKRRSKNKRKARKKLCMENGVAT 372

[Close]

BLAST of CmaCh14G008510 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 2.1e-71
Identity = 156/216 (72.22%), Postives = 174/216 (80.56%), Query Frame = 1


Query: 236 KDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQ 295
           +DLMLCKSILSEYT KM L+RP+YTTK ++GSV  FQSTLVFDGVVYT D+ R+KKEAEQ
Sbjct: 158 EDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQ 217

Query: 296 LAARAAILSLH-DAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEH 355
           LAARAAILSLH DA NPKSQK L +IIASKVR HAM+QKVKDS+ SQ QPK MPENTVE 
Sbjct: 218 LAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVER 277

Query: 356 VTTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVASSPSERLPIESVPS 415
           V  TVNE KE+  A+LD  + CGAISE CPT S   PE  + KP  SSP  RLPIE V S
Sbjct: 278 VAMTVNEGKELKDAVLDGGMVCGAISEACPT-SQFQPEFSATKPDGSSPLMRLPIEFVRS 337

Query: 416 TSEEPVGDRAT-GTKKRSKNKRKARKKLCMENQVAT 450
           T EEPVG  AT G+K++SKNKRKARKKLCMEN+VAT
Sbjct: 338 TLEEPVGYHATIGSKRKSKNKRKARKKLCMENRVAT 372

[Close]

BLAST of CmaCh14G008510 vs. NCBI nr
Match: gi|700202703|gb|KGN57836.1| (hypothetical protein Csa_3G345370 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 2.8e-71
Identity = 156/215 (72.56%), Postives = 173/215 (80.47%), Query Frame = 1


Query: 237 DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQL 296
           DLMLCKSILSEYT KM L+RP+YTTK ++GSV  FQSTLVFDGVVYT D+ R+KKEAEQL
Sbjct: 99  DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQL 158

Query: 297 AARAAILSLH-DAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPENTVEHV 356
           AARAAILSLH DA NPKSQK L +IIASKVR HAM+QKVKDS+ SQ QPK MPENTVE V
Sbjct: 159 AARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERV 218

Query: 357 TTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPELRSIKPVASSPSERLPIESVPST 416
             TVNE KE+  A+LD  + CGAISE CPT S   PE  + KP  SSP  RLPIE V ST
Sbjct: 219 AMTVNEGKELKDAVLDGGMVCGAISEACPT-SQFQPEFSATKPDGSSPLMRLPIEFVRST 278

Query: 417 SEEPVGDRAT-GTKKRSKNKRKARKKLCMENQVAT 450
            EEPVG  AT G+K++SKNKRKARKKLCMEN+VAT
Sbjct: 279 LEEPVGYHATIGSKRKSKNKRKARKKLCMENRVAT 312

The following BLAST results are available for this feature:

BLAST of CmaCh14G008510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRB1_ARATH	6.1e-10	38.82	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1	[more]
DRB4_ORYSJ	6.1e-10	30.11	Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE...	[more]
DRB8_ORYSJ	6.7e-09	39.25	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE...	[more]
DRB7_ORYSJ	6.7e-09	39.25	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE...	[more]
DRB3_ORYSJ	1.1e-08	33.64	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE...	[more]

BLAST of CmaCh14G008510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCN7_CUCSA	1.9e-71	72.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1	[more]
A0A0A0LAZ4_CUCSA	5.3e-53	69.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1	[more]
D7TSR3_VITVI	1.0e-27	43.12	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=...	[more]
U5GC64_POPTR	5.2e-24	39.66	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s14370g PE=4 SV=1	[more]
A0A0J8D2D8_BETVU	1.5e-23	35.04	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g009890 PE=4 S...	[more]

BLAST of CmaCh14G008510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09700.1	3.4e-11	38.82	dsRNA-binding domain-like superfamily protein	[more]

BLAST of CmaCh14G008510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680845\|ref\|XP_011651405.1\|	1.2e-77	45.43	PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus]	[more]
gi\|659114470\|ref\|XP_008457067.1\|	2.6e-77	76.74	PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|659114468\|ref\|XP_008457066.1\|	6.4e-76	76.39	PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo]	[more]
gi\|449464150\|ref\|XP_004149792.1\|	2.1e-71	72.22	PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus]	[more]
gi\|700202703\|gb\|KGN57836.1\|	2.8e-71	72.56	hypothetical protein Csa_3G345370 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G008510.1	CmaCh14G008510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 79..145 score: 2.5E-16coord: 242..306 score: 3.8
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 79..144 score: 2.9E-9coord: 242..304 score: 6.2
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 241..306 score: 8.2E-10coord: 79..146 score: 5.7
IPR014720	Double-stranded RNA-binding domain	PROFILE	PS50137	DS_RBD	coord: 78..147 score: 11
None	No IPR available	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 229..372 score: 1.7E-54coord: 1..152 score: 1.7
None	No IPR available	PANTHER	PTHR11207:SF8	SUBFAMILY NOT NAMED	coord: 1..152 score: 1.7E-54coord: 229..372 score: 1.7
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 235..305 score: 1.32E-13coord: 74..145 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G008510	Cla013177	Watermelon (97103) v1	cmawmB243
CmaCh14G008510	MELO3C020280	Melon (DHL92) v3.5.1	cmameB243
CmaCh14G008510	ClCG05G011010	Watermelon (Charleston Gray)	cmawcgB234
CmaCh14G008510	CmoCh14G008650	Cucurbita moschata (Rifu)	cmacmoB244
CmaCh14G008510	Lsi05G003100	Bottle gourd (USVL1VR-Ls)	cmalsiB249
CmaCh14G008510	Cp4.1LG03g05950	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G008510	MELO3C020280.2	Melon (DHL92) v3.6.1	cmamedB274
CmaCh14G008510	Cla97C05G093280	Watermelon (97103) v2	cmawmbB264
CmaCh14G008510	Bhi01G001352	Wax gourd	cmawgoB0333
CmaCh14G008510	Carg24224	Silver-seed gourd	carcmaB0240

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G008510	Cucumber (Gy14) v1	cgycmaB0548
CmaCh14G008510	Cucurbita moschata (Rifu)	cmacmoB257
CmaCh14G008510	Wild cucumber (PI 183967)	cmacpiB244
CmaCh14G008510	Cucumber (Chinese Long) v2	cmacuB242
CmaCh14G008510	Cucurbita pepo (Zucchini)	cmacpeB279
CmaCh14G008510	Cucumber (Gy14) v2	cgybcmaB308
CmaCh14G008510	Silver-seed gourd	carcmaB1057
CmaCh14G008510	Cucumber (Chinese Long) v3	cmacucB0281
CmaCh14G008510	Cucurbita maxima (Rimu)	cmacmaB255