CmoCh14G008650 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G008650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Double-stranded RNA-binding 4
Location	Cmo_Chr14 : 4570965 .. 4574661 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTAATTGGAAGGATTAAAAACCCTCGCCCACCCTTCACAGTCCACAGACCGGAAATTTCCCCCGCTATTCATTCATTGCCATTGCCTAATTCTTCCCATTTCAATTTGTTCTCATTGAGTTTCGATAACATTCGATCATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCGGCTTCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCAGATACTCGTCCTCCACCTGTTTTACCGGACGCAATTCTGATTCCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCGTAAGTCTATGGTATTGTTGCCTATCATCGTTTTTTAGGCGTTTTGATTGTTACGGTCTAGTGTTTTTATTTGAGCTAATGCTTTTGTTAGATGATGGATTTCCTCTTCATTTGGTGCATGAAGTTTTCTAGCTGTTTTTTTTTTTTTGTTTCTGTTATAGTGAGAAGCAATTGCACTCCTTCTGTGAGTTCGCGTGGTGCCTGTCTGTGTGTTGAAAAGATAACTCTGTTTTTCTGTATGTATCTACGAAGAGGTCCTGAGAATTCGATCTTAAGTTGCTATGTTTACTTTCATTTTCTTTTCACAATCTTTGGACGCTGGATTATTTTGCGAGTTTGAATACTGGCAGCTGTGTGGTGATGATCTAGAGATTCCTTCTTTGTTCAGTTAAAAAAAATTGGTGGAAAAATTCTCTAGAAGAAATTGTTCTATGTGGTTCTTAGCGCTTCTTAATTGAATCCCAGCCTATCACCTTGCCCTCGATCCCTAGTGGTGTGGCATTCGCGAAAAGAATAGTGATATTTAAATCACCTATTTATTCGTATTTCCTATACTGTTCCTACACTCTCTGGTGTGCTCAATGAGAGATGGATAAACTAAGGACTAATCACTTCAGGCACTAGCTGGTCCTCATTGGAGCAACAAACCCGAATTCTGTGGGGGTTTACTGTCATAGCTCTCTGTTTTGATCTGACAATGAGGACTCTTTCTTTGAAGACCAGTTTCTTGACAATCCTGTGGTGGGTTTAACTCGTAAGTAACCAGATAAGCCTCGAAGAAGTGAAAGATAAATGGGAGGATGTTCTGAATTTTGATCATTTTATTATTGTTCCTTTTCTTTTGCATCTCTCTTGATTTTTCTATTTTCTGTGATTAAAGATGTAGGAGCCTTTTCTTATAATTTCTTTTGCTAGTTCTGCATCTTGGTTTGGCACTCAGGGCTTTGTTATTGTATGGCCTTTTTCTACTTCCATTGCACTCAACGAAAGTAATAAAAAAGAAAGGAAAAAAAGACTTAAGTCATTTACTGAAGTGGAGAGTTTTTCAATATTGGACTTGTCTGGGTACTTATTTGATCTGACGTTGCTGATTGGGGACTTTTGTAACTTTCCACAGCATGGACTCTTCTAATGTCCCGCTTTTCTCTTTCGGGCTGTAATTTAATTATTTATATTTTAATCTAGTTTCCTAATAAAAGTAAAGGTTCCCCACAGTTCTAGTGTGCAGAAATTTGTTATTTGGTGGATCTTTGTTTTCTTGATAAGAACAGAAAAGCATTAATGTTATGACTTTCTTTTACTTGGTTTTGCAGAACTCTTCCTATACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCATACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCTCTCGAGTACATATCAAAAAAGGCTAAGGATGATGGATTTGTTCTCCTTCATGAGGTATGACTTATATGATGAGACTGAAACTTGTTTGGTGGCCTTTGATTTTTAGCATGCTTGTTTCTTTATTTATTTATTTTTATTTTAGGCAACATTGTGGGGGAAATTTCAACCTTCTGAACTTAATGGAAGAAATAGATGCTTTGACCACTATATTATGCTCATGTTGGCTATATTTTTGCTTGTTTAGTTGATTATAGACGCAATTCAATGATGAGATTTCCTACCTAGACTTTCAGTTTGTTACAAATAAGTTTTTATGTATGGAGATTACCTTTTGTAATTTTCTTTCGCAATGTGTACAATAACTTATTTGAATCCAACAGAAACAGTAATTTCTACCCGATATATTTGTTATTGTTCTTGGATGAAAAAATCTTAGTAATAATTGCATGTAATCACTTACGTTGTATAAGATTTCTCATAGTCATAGTCATCGACATTCTCGAAGCTTGGAATTTATCTAATTGATTTTAGTGATAAGGCATTTAGTCTGTCTGAATAAGAAGTTCAGAAATGATGCCTTCGGGAATGAGGTTGTGAGACACTGTTTGCTTTTGTTTGTAGTTCACAGGGATAGGATTCAAATGTATGAGAGAGATAAGCGCAAAAGAATTATAAAAGGGGCTCCAATTGCTAACGTCCTTAGTGATAGAAGTCCAATTGAGAAGTTGGACCTAGCCATGGCTTACACCCATTCCCAAGGACATTCCTTTTCAAGACTCCCCTATTTCTCTCGAGCCAAATGTTCCATAAATTCACAAAAGTAAGCAGTCTGTCAAAAGAAGTCCCTCTATTGCATGCTATAATTTTGATTGTGCCTTATACTTATTTTCTTATTGGTCTTTAATGTTCTGAATGTTTGTTCATGCTGTGTTATGATATTGATTATTGTGTACCAGCACTTCACTAATGGTATTAAATATTGACATGTTGAAAAGAAAACATATATATATTTGATTGCTATACTTTATATTGACTTCGAATCTGATATACAAACTATGTCATTTGTTCTTATTTCAGGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACTAAACAACATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTCGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCTCTTCATGGTATTTAATTGTTGGAAACAACTTCTGAATTATTTCAAAATACTCGGTGCCTTGTCAAAGTTGCCTTTATTAAATAATAATAATAATAGTTATTGCTACTATTATTTTGTAGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCTCAAATTCAACCGAAATATATGCCTGACAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGGCATGTGGTGCAATTTCAGAGATTTGTCCGACAATATCTCATCTTGGACCTGAATTTAGATCAATAAAACCGGAGGCATCATCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGTAA

mRNA sequence

TCCTAATTGGAAGGATTAAAAACCCTCGCCCACCCTTCACAGTCCACAGACCGGAAATTTCCCCCGCTATTCATTCATTGCCATTGCCTAATTCTTCCCATTTCAATTTGTTCTCATTGAGTTTCGATAACATTCGATCATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCGGCTTCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCAGATACTCGTCCTCCACCTGTTTTACCGGACGCAATTCTGATTCCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAACTCTTCCTATACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCATACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCTCTCGAGTACATATCAAAAAAGGCTAAGGATGATGGATTTGTTCTCCTTCATGAGGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACTAAACAACATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTCGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCTCTTCATGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCTCAAATTCAACCGAAATATATGCCTGACAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGGCATGTGGTGCAATTTCAGAGATTTGTCCGACAATATCTCATCTTGGACCTGAATTTAGATCAATAAAACCGGAGGCATCATCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGTAA

Coding sequence (CDS)

ATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCGGCTTCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAATCAGATACTCGTCCTCCACCTGTTTTACCGGACGCAATTCTGATTCCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAACTCTTCCTATACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCATACCTAAATATAGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCTCTCGAGTACATATCAAAAAAGGCTAAGGATGATGGATTTGTTCTCCTTCATGAGGATTTGATGCTATGCAAGTCCATTTTGTCTGAATATACGGTGAAAATGAGTTTGAAAAGACCTATGTACACTACTAAACAACATGAAGGCTCGGTTCCAATTTTCCAATCCACCTTGGTTTTCGATGGTGTGGTTTATACTGGTGATATTAGTAGGAGTAAGAAAGAGGCAGAGCAATTGGCAGCACGTGCTGCTATTCTTTCTCTTCATGATGCAGGAAATCCTAAATCACAAAAAACTCTTGCCGAAATCATTGCATCTAAAGTCCGGCTCCATGCAATGATGCAAAAAGTTAAAGATTCACATCCTTCTCAAATTCAACCGAAATATATGCCTGACAATACAGTGGAACATGTAACAACGACAGTTAATGAAGATAAAGAAGTCAATGGTGCTATTTTGGACAATGTAGTGGCATGTGGTGCAATTTCAGAGATTTGTCCGACAATATCTCATCTTGGACCTGAATTTAGATCAATAAAACCGGAGGCATCATCCCCTTCAGAGAGACTTCCAATAGAATCTGTGCCTTCAACTTCAGAGGAGCCTGTTGGTGATCGTGCAACTGGGTCTAAAAAGCGATCTAAGAACAAGAGAAAGGCTCGTAAGAAACTGTGTATGGAGAACCAGTAA

Homology

[Close]

BLAST of CmoCh14G008650 vs. Swiss-Prot
Match: DRB4_ORYSJ (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.1e-22
Identity = 88/279 (31.54%), Postives = 144/279 (51.61%), Query Frame = 1


Query: 63  APVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYV 122
           AP+  P P        YK+ L EY Q++   LP+Y T  +G     K++STV+VD   + 
Sbjct: 28  APLPPPPPH-----CNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFS 87

Query: 123 SPNTFRNRRAAEQDAARIALEYISKKAKD-----DGFVLLHEDLMLCKSILSEYTVKMSL 182
           S    R  + AEQDAA++A + + ++ +      D F L+ +D++  KSIL EYT K   
Sbjct: 88  STFCHRRVKDAEQDAAKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKT 147

Query: 183 KRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQ 242
            +P Y+  + EGSV  + S++ F G  YTG  +R+KK+AEQ AARAA+ SL       + 
Sbjct: 148 DQPEYSVTKTEGSVTPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL----LATNY 207

Query: 243 KTLAEIIASKVRLHAMM-----QKVKDSHPSQIQPKYMPDNTVEHVTTTVNE--DKEVNG 302
            ++A+I+ SK +L   +      K  DS+P+    K +P   ++    ++ +  D E++ 
Sbjct: 208 TSMAKIVRSKEKLIRAISPSGYNKGIDSNPTN---KKLPFAPIKFTPPSIFKLYDGEIDM 267

Query: 303 AILDNVVACGAISEICPTISHLGPEFRSIKPEASSPSER 330
             +   +         P ++   P+ R     AS+PSE+
Sbjct: 268 LSVPQAL-------FAPLVAAEEPKVRPAAEPASNPSEQ 287

[Close]

BLAST of CmoCh14G008650 vs. Swiss-Prot
Match: DRB7_ORYSJ (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.3e-22
Identity = 72/226 (31.86%), Postives = 114/226 (50.44%), Query Frame = 1


Query: 44  DTRPPPVLPDAILIPSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEG 103
           D  P P+ P+     +++ AP  +     +   +++K+ L EY QK+ +  P Y TF EG
Sbjct: 2   DMPPTPLPPETA---NTSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEG 61

Query: 104 SQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLML 163
               P ++STVV++   Y S   F NR+AAEQ AA +AL  I K    +  +   ++  L
Sbjct: 62  PSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGL 121

Query: 164 CKSILSEYTVKMSLKRPMY-TTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAAR 223
           CK++L EY  KM+   P Y  TK   G  P F  T+   G+ Y G  +R+KK+AE  AAR
Sbjct: 122 CKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAAR 181

Query: 224 AAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPK 269
            A+L++       +      I+    R+   ++K+    P  ++ K
Sbjct: 182 TALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKMPIETPKPLKIK 223

[Close]

BLAST of CmoCh14G008650 vs. Swiss-Prot
Match: DRB1_ARATH (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.5e-22
Identity = 64/167 (38.32%), Postives = 99/167 (59.28%), Query Frame = 1


Query: 66  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPN 125
           S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S  
Sbjct: 3   STDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP 62

Query: 126 TFRNRRAAEQDAARIALEYISKKAKDDGFVL--LHEDLMLCKSILSEYTVKMSLKRPMYT 185
            F NR+AAEQ AA +AL  ++K ++    V   +HE   LCK++L EY  KM+   P+Y 
Sbjct: 63  GFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHE-TGLCKNLLQEYAQKMNYAIPLYQ 122

Query: 186 TKQHE--GSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSL 229
            ++ E  G V  F  T+   G+ YTG  +R+KK+AE  A R A+L++
Sbjct: 123 CQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 168

[Close]

BLAST of CmoCh14G008650 vs. Swiss-Prot
Match: DRB3_ORYSJ (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-21
Identity = 70/229 (30.57%), Postives = 115/229 (50.22%), Query Frame = 1


Query: 41  LESDTRPPPVLPDAILIPSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF 100
           ++  + P P+ P+     +++ AP+ +     +   +++K+ L EY QK+ +  P Y T 
Sbjct: 1   MKKKSAPTPLPPETA---NTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTS 60

Query: 101 DEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHED 160
            EG    P ++STVV++   Y S   F NR+AAEQ AA +AL  I K    +  +   ++
Sbjct: 61  KEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQE 120

Query: 161 LMLCKSILSEYTVKMSLKRPMY-TTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQL 220
             LCK++L EY  KM+   P Y  TK   G  P F  T+   G+ Y G  +R+KK+AE  
Sbjct: 121 TGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-FLCTVEIGGIQYIGAAARTKKDAEIK 180

Query: 221 AARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPK 269
           AAR A+L++       +      I+    R+   ++K     P  ++ K
Sbjct: 181 AARTALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIETPKPLKAK 225

[Close]

BLAST of CmoCh14G008650 vs. Swiss-Prot
Match: DRB8_ORYSJ (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.6e-21
Identity = 72/226 (31.86%), Postives = 113/226 (50.00%), Query Frame = 1


Query: 44  DTRPPPVLPDAILIPSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEG 103
           D  P P+ P+     +++ AP  +     +   +++K+ L EY QK+ +  P Y TF EG
Sbjct: 2   DMPPTPLPPETA---NTSPAPNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEG 61

Query: 104 SQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLML 163
               P ++STVV++   Y S   F NR+AAEQ AA +AL  I K    +  +   ++  L
Sbjct: 62  PSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGL 121

Query: 164 CKSILSEYTVKMSLKRPMY-TTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAAR 223
           CK++L EY  KM+   P Y  TK   G  P F  T+   G+ Y G  +R+KK+AE  AAR
Sbjct: 122 CKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICTVEIGGIQYIGAAARTKKDAEIKAAR 181

Query: 224 AAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPK 269
            A+L++       +      I+    R+   ++K     P  ++ K
Sbjct: 182 TALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIETPKPLKVK 223

[Close]

BLAST of CmoCh14G008650 vs. TrEMBL
Match: A0A0A0LCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 4.5e-71
Identity = 154/212 (72.64%), Postives = 172/212 (81.13%), Query Frame = 1


Query: 160 DLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQL 219
           DLMLCKSILSEYT KM L+RP+YTTK ++GSV  FQSTLVFDGVVYT D+ R+KKEAEQL
Sbjct: 99  DLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQL 158

Query: 220 AARAAILSLH-DAGNPKSQKTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHV 279
           AARAAILSLH DA NPKSQK L +IIASKVR HAM+QKVKDS+ SQ QPK MP+NTVE V
Sbjct: 159 AARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERV 218

Query: 280 TTTVNEDKEVNGAILDNVVACGAISEICPTISHLGPEFRSIKPEASSPSERLPIESVPST 339
             TVNE KE+  A+LD  + CGAISE CPT S   PEF + KP+ SSP  RLPIE V ST
Sbjct: 219 AMTVNEGKELKDAVLDGGMVCGAISEACPT-SQFQPEFSATKPDGSSPLMRLPIEFVRST 278

Query: 340 SEEPVGDRAT-GSKKRSKNKRKARKKLCMENQ 370
            EEPVG  AT GSK++SKNKRKARKKLCMEN+
Sbjct: 279 LEEPVGYHATIGSKRKSKNKRKARKKLCMENR 309

[Close]

BLAST of CmoCh14G008650 vs. TrEMBL
Match: D7TSR3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 9.5e-61
Identity = 152/318 (47.80%), Postives = 196/318 (61.64%), Query Frame = 1


Query: 60  SASAPVSSPKPSD--LTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVD 119
           S +A V  P PS   L +  ++KN L EYTQ+S IPLP+YQT +EG Q  PK+RSTV+VD
Sbjct: 2   SEAAKVDCPAPSSTRLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVD 61

Query: 120 EVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSL 179
              Y SPNTF +R+AAEQD AR+ALE+ISKK KD+G  L+ ED + CKSIL+E+ VKM+L
Sbjct: 62  GATYTSPNTFSHRKAAEQDVARLALEFISKKIKDEGCPLIREDTVFCKSILNEFAVKMNL 121

Query: 180 KRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQ 239
           ++P YTT Q EG +P+F S+LVF+GV YTGD  R+KKEAEQLAAR  ILS+   GN  S 
Sbjct: 122 EKPTYTTVQPEGLLPVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSI--LGNSGSG 181

Query: 240 KTLAEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEV---NGAILD 299
             L+EII SKV+L+A + +VKD  PS I    +P      +     ++ EV      +L 
Sbjct: 182 TLLSEIIKSKVKLYAALHRVKD--PSYIHTGILPIGLTSGIPPCKGKEVEVAPGTDQLLP 241

Query: 300 NVVACGAISEI--CPTISHLGPEFRSIKPEASSPSERLPIESVPSTSEEP-VGDRATGSK 359
             V+     ++   P       E    KP  SS     PI  VPS  E+P V    TG K
Sbjct: 242 TAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSSEVIAPPISFVPSVFEQPLVVSPTTGRK 301

Query: 360 KRSKNKRKARKKLCMENQ 370
           +  KNK+KA KKL  + Q
Sbjct: 302 RNRKNKKKANKKLRTDAQ 315

[Close]

BLAST of CmoCh14G008650 vs. TrEMBL
Match: A0A067KA91_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.8e-55
Identity = 130/272 (47.79%), Postives = 178/272 (65.44%), Query Frame = 1


Query: 35  NSNTPQLESDTRPPPVLPDAILIPSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPL 94
           N    Q ++  +    +P     P+ A++ V++  PS   QL ++KN L EYTQKS + L
Sbjct: 13  NHAASQYQNPNQASASVPLLAQAPAPATSTVAASTPSSPHQL-MHKNRLQEYTQKSSLQL 72

Query: 95  PVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGF 154
           P+YQT +EG Q  P++RSTV+VD   Y SPNTF +R+ AEQDAAR+A+E I KK KD+G 
Sbjct: 73  PIYQTVNEGHQHAPRFRSTVIVDGEQYTSPNTFAHRKGAEQDAARVAMECILKKTKDEGC 132

Query: 155 VLLHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKK 214
            L++ED + CKSIL EY VKM +++PMY T Q +G  PIF STLVF+GV YTGD  R+KK
Sbjct: 133 PLIYEDKVFCKSILYEYAVKMQIEKPMYNTFQPQGLFPIFGSTLVFNGVTYTGDTGRTKK 192

Query: 215 EAEQLAARAAILSLHDAGNPKSQKTLAEIIASKVRLHAMMQKVKDSH-PSQIQPKYMPDN 274
           EAEQLAAR+AILSL   GNP S   ++EII SK +L+A + K K+S   +Q+  +   D 
Sbjct: 193 EAEQLAARSAILSL--MGNPVSSAIISEIIKSKSKLYASLYKFKESQLDAQLDSQSQLD- 252

Query: 275 TVEH-VTTTVNEDKEVNGAILDNVVACGAISE 305
             +H +   VN++KE    ++ N V   AI +
Sbjct: 253 -AQHGIVPAVNKNKEAEVVLVGNNVPLRAIPQ 279

[Close]

BLAST of CmoCh14G008650 vs. TrEMBL
Match: A0A0A0LAZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 112/158 (70.89%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 2   VEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSSA 61
           +EESGTVEA   QQS FP DS   VV   IPVENSNT Q + D  PP VLPD + IPS+A
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEYTQK++I +PVYQT DEGS  +PKYRSTV+VDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE 160
           VSPNTFRNRRAAEQDAAR+A EYISKK KDD F+LL E
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of CmoCh14G008650 vs. TrEMBL
Match: A0A061EHS9_THECC (DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TCM_019209 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.5e-53
Identity = 135/306 (44.12%), Postives = 188/306 (61.44%), Query Frame = 1


Query: 66  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPN 125
           S+P PS   +  ++KN L EYTQ+S IPLPVYQT +EGS   P++RSTV+VD   Y S +
Sbjct: 18  SAPNPSRAPEPLMHKNRLQEYTQRSSIPLPVYQTTNEGSLHAPRFRSTVLVDGTSYTSLD 77

Query: 126 TFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPMYTTK 185
           TF +R+AAEQDAA++AL+ I+KK KD+G  ++ ED + CKSIL+E+ VKM+++ P Y T 
Sbjct: 78  TFSHRKAAEQDAAKVALDCITKKIKDEGCPIIREDTVFCKSILNEFAVKMNMEMPSYNTI 137

Query: 186 QHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTLAEIIA 245
           Q EG +P+F S+LVF+ V Y+G   R+KKEAEQLAARAA+LSL D  + +    L+EII 
Sbjct: 138 QSEGLIPLFVSSLVFNDVTYSGKTGRNKKEAEQLAARAALLSLLD--DSRYGTFLSEIIK 197

Query: 246 SKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVACGAISEI 305
           SK +L+  + KVKDS  S I        T     T++++++E+  A++ N V    I   
Sbjct: 198 SKAKLYVALNKVKDSSISHI------GTTPAGANTSIHKNEEIETAVVTNSVPNTVILPS 257

Query: 306 CPTISHLGPEFRSIKPEASSPSERLPIESVPSTSEE--PVGDRATGSKKRSKNKRKARKK 365
                     F+  K E  S    LPI  VP+   E  PVG+    S  R + ++K R K
Sbjct: 258 SSGAKRPHHVFKIEKLEEGSEHIDLPIVFVPTAVAESLPVGE----SSSRKRRRKKKRAK 311

Query: 366 LCMENQ 370
           L  E Q
Sbjct: 318 LDTETQ 311

[Close]

BLAST of CmoCh14G008650 vs. TAIR10
Match: AT1G09700.1 (AT1G09700.1 dsRNA-binding domain-like superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-23
Identity = 64/167 (38.32%), Postives = 99/167 (59.28%), Query Frame = 1


Query: 66  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPN 125
           S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S  
Sbjct: 3   STDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLP 62

Query: 126 TFRNRRAAEQDAARIALEYISKKAKDDGFVL--LHEDLMLCKSILSEYTVKMSLKRPMYT 185
            F NR+AAEQ AA +AL  ++K ++    V   +HE   LCK++L EY  KM+   P+Y 
Sbjct: 63  GFFNRKAAEQSAAEVALRELAKSSELSQCVSQPVHE-TGLCKNLLQEYAQKMNYAIPLYQ 122

Query: 186 TKQHE--GSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSL 229
            ++ E  G V  F  T+   G+ YTG  +R+KK+AE  A R A+L++
Sbjct: 123 CQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAI 168

[Close]

BLAST of CmoCh14G008650 vs. TAIR10
Match: AT2G28380.1 (AT2G28380.1 dsRNA-binding protein 2)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-15
Identity = 50/153 (32.68%), Postives = 79/153 (51.63%), Query Frame = 1


Query: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137
           +YKN L E  Q+S   LP Y    EG    P++++TV  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 138 ARIALEYISKKAKDDGFVL-LHEDLMLCKSILSEYTVKMSLKRPMYTT-KQHEGSVPIFQ 197
           A +AL  +S +         + ++  + K++L E   ++    P YTT +   G  P+F 
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 198 STLVFDGVVYTGDISRSKKEAEQLAARAAILSL 229
            T+   G+ +TGD +++KK+AE+ AA AA  SL
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153

[Close]

BLAST of CmoCh14G008650 vs. TAIR10
Match: AT5G41070.1 (AT5G41070.1 dsRNA-binding protein 5)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-13
Identity = 52/177 (29.38%), Postives = 89/177 (50.28%), Query Frame = 1


Query: 78  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHYVSPNTFRNRRAAEQDA 137
           +YKN L E  Q+S   LP Y    EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 138 ARIALEYISKKAKDDGFVL-LHEDLMLCKSILSEYTVKMSLKRPMYTTKQHEGSV--PIF 197
           A ++L  +S +         + ++  + K++L E   +  L  PMYT+ +  GS   P F
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVR-SGSCHFPGF 120

Query: 198 QSTLVFDGVVYTGDISRSKKEAEQLAARAA------ILSLHDAGNPKSQKTLAEIIA 246
             T+   G+ +TG+ +++KK+AE+ AA AA      + SL      K Q+ +A +++
Sbjct: 121 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSLKKMSSLDSQDEEKEQEAVARVLS 176

[Close]

BLAST of CmoCh14G008650 vs. NCBI nr
Match: gi|659114470|ref|XP_008457067.1| (PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 500.0 bits (1286), Expect = 3.6e-138
Identity = 271/368 (73.64%), Postives = 301/368 (81.79%), Query Frame = 1


Query: 2   VEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSSA 61
           +E SGTVEA   QQS F  DS   VV   IPV+N +T Q + +  PP VLPD +LIPS+A
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEY QK+RI +PVYQT DEGS G+PK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPM 181
           VSPNTFRNRRAAEQDAARIA EYISKK KDD F+LL EDL+LCKSILSEYT KM L+RP+
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLREDLILCKSILSEYTDKMGLERPI 180

Query: 182 YTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTLA 241
           YTTK H+GSVP+FQSTLVFDGVVYT D+SR+KKEAEQLAARAAILSLHDA N KSQKTLA
Sbjct: 181 YTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHDAINIKSQKTLA 240

Query: 242 EIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVACGA 301
           +IIASKVR HAM+QKVKDSH SQIQPK MP+NTVE V  TVNEDK V  A+ D+ V CGA
Sbjct: 241 DIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVSDSGVVCGA 300

Query: 302 ISEICPTISHLGPEFRSIKPEASSPSERLPIESVPSTSEEPVGDRA-TGSKKRSKNKRKA 361
           ISE CPT S   PEF S KPE SSP  RLPIE VPST E PVGD A TGSK+RSKNKRKA
Sbjct: 301 ISEACPT-SLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRRSKNKRKA 360

Query: 362 RKKLCMEN 369
           RKKLCMEN
Sbjct: 361 RKKLCMEN 367

[Close]

BLAST of CmoCh14G008650 vs. NCBI nr
Match: gi|659114468|ref|XP_008457066.1| (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 495.4 bits (1274), Expect = 8.9e-137
Identity = 271/369 (73.44%), Postives = 301/369 (81.57%), Query Frame = 1


Query: 2   VEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSSA 61
           +E SGTVEA   QQS F  DS   VV   IPV+N +T Q + +  PP VLPD +LIPS+A
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEY QK+RI +PVYQT DEGS G+PK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPM 181
           VSPNTFRNRRAAEQDAARIA EYISKK KDD F+LL EDL+LCKSILSEYT KM L+RP+
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLREDLILCKSILSEYTDKMGLERPI 180

Query: 182 YTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLH-DAGNPKSQKTL 241
           YTTK H+GSVP+FQSTLVFDGVVYT D+SR+KKEAEQLAARAAILSLH DA N KSQKTL
Sbjct: 181 YTTKHHKGSVPLFQSTLVFDGVVYTSDLSRTKKEAEQLAARAAILSLHEDAINIKSQKTL 240

Query: 242 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVACG 301
           A+IIASKVR HAM+QKVKDSH SQIQPK MP+NTVE V  TVNEDK V  A+ D+ V CG
Sbjct: 241 ADIIASKVRFHAMLQKVKDSHFSQIQPKSMPENTVERVAMTVNEDKNVKDAVSDSGVVCG 300

Query: 302 AISEICPTISHLGPEFRSIKPEASSPSERLPIESVPSTSEEPVGDRA-TGSKKRSKNKRK 361
           AISE CPT S   PEF S KPE SSP  RLPIE VPST E PVGD A TGSK+RSKNKRK
Sbjct: 301 AISEACPT-SLFRPEFSSTKPEGSSPLVRLPIEFVPSTLEVPVGDHATTGSKRRSKNKRK 360

Query: 362 ARKKLCMEN 369
           ARKKLCMEN
Sbjct: 361 ARKKLCMEN 368

[Close]

BLAST of CmoCh14G008650 vs. NCBI nr
Match: gi|778680845|ref|XP_011651405.1| (PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 493.4 bits (1269), Expect = 3.4e-136
Identity = 266/369 (72.09%), Postives = 298/369 (80.76%), Query Frame = 1


Query: 2   VEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSSA 61
           +EESGTVEA   QQS FP DS   VV   IPVENSNT Q + D  PP VLPD + IPS+A
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEYTQK++I +PVYQT DEGS  +PKYRSTV+VDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPM 181
           VSPNTFRNRRAAEQDAAR+A EYISKK KDD F+LL EDLMLCKSILSEYT KM L+RP+
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180

Query: 182 YTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLHDAGNPKSQKTLA 241
           YTTK ++GSV  FQSTLVFDGVVYT D+ R+KKEAEQLAARAAILSLHDA NPKSQK L 
Sbjct: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHDATNPKSQKALG 240

Query: 242 EIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVACGA 301
           +IIASKVR HAM+QKVKDS+ SQ QPK MP+NTVE V  TVNE KE+  A+LD  + CGA
Sbjct: 241 DIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCGA 300

Query: 302 ISEICPTISHLGPEFRSIKPEASSPSERLPIESVPSTSEEPVGDRAT-GSKKRSKNKRKA 361
           ISE CPT S   PEF + KP+ SSP  RLPIE V ST EEPVG  AT GSK++SKNKRKA
Sbjct: 301 ISEACPT-SQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRKA 360

Query: 362 RKKLCMENQ 370
           RKKLCMEN+
Sbjct: 361 RKKLCMENR 368

[Close]

BLAST of CmoCh14G008650 vs. NCBI nr
Match: gi|449464150|ref|XP_004149792.1| (PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus])

HSP 1 Score: 488.8 bits (1257), Expect = 8.3e-135
Identity = 266/370 (71.89%), Postives = 298/370 (80.54%), Query Frame = 1


Query: 2   VEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSSA 61
           +EESGTVEA   QQS FP DS   VV   IPVENSNT Q + D  PP VLPD + IPS+A
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEYTQK++I +PVYQT DEGS  +PKYRSTV+VDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPM 181
           VSPNTFRNRRAAEQDAAR+A EYISKK KDD F+LL EDLMLCKSILSEYT KM L+RP+
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180

Query: 182 YTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLH-DAGNPKSQKTL 241
           YTTK ++GSV  FQSTLVFDGVVYT D+ R+KKEAEQLAARAAILSLH DA NPKSQK L
Sbjct: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKAL 240

Query: 242 AEIIASKVRLHAMMQKVKDSHPSQIQPKYMPDNTVEHVTTTVNEDKEVNGAILDNVVACG 301
            +IIASKVR HAM+QKVKDS+ SQ QPK MP+NTVE V  TVNE KE+  A+LD  + CG
Sbjct: 241 GDIIASKVRFHAMLQKVKDSNFSQFQPKSMPENTVERVAMTVNEGKELKDAVLDGGMVCG 300

Query: 302 AISEICPTISHLGPEFRSIKPEASSPSERLPIESVPSTSEEPVGDRAT-GSKKRSKNKRK 361
           AISE CPT S   PEF + KP+ SSP  RLPIE V ST EEPVG  AT GSK++SKNKRK
Sbjct: 301 AISEACPT-SQFQPEFSATKPDGSSPLMRLPIEFVRSTLEEPVGYHATIGSKRKSKNKRK 360

Query: 362 ARKKLCMENQ 370
           ARKKLCMEN+
Sbjct: 361 ARKKLCMENR 369

[Close]

BLAST of CmoCh14G008650 vs. NCBI nr
Match: gi|778680848|ref|XP_011651406.1| (PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus])

HSP 1 Score: 327.4 bits (838), Expect = 3.2e-86
Identity = 169/228 (74.12%), Postives = 189/228 (82.89%), Query Frame = 1


Query: 2   VEESGTVEAVPQQQSSFPPDSASAVVPAVIPVENSNTPQLESDTRPPPVLPDAILIPSSA 61
           +EESGTVEA   QQS FP DS   VV   IPVENSNT Q + D  PP VLPD + IPS+A
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 62  SAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGIPKYRSTVVVDEVHY 121
            AP+ SP  SD TQ+F+YKNHLHEYTQK++I +PVYQT DEGS  +PKYRSTV+VDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 122 VSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEDLMLCKSILSEYTVKMSLKRPM 181
           VSPNTFRNRRAAEQDAAR+A EYISKK KDD F+LL EDLMLCKSILSEYT KM L+RP+
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPI 180

Query: 182 YTTKQHEGSVPIFQSTLVFDGVVYTGDISRSKKEAEQLAARAAILSLH 230
           YTTK ++GSV  FQSTLVFDGVVYT D+ R+KKEAEQLAARAAILSLH
Sbjct: 181 YTTKHNQGSVAFFQSTLVFDGVVYTSDLGRTKKEAEQLAARAAILSLH 228

The following BLAST results are available for this feature:

BLAST of CmoCh14G008650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRB4_ORYSJ	1.1e-22	31.54	Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE...	[more]
DRB7_ORYSJ	7.3e-22	31.86	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE...	[more]
DRB1_ARATH	9.5e-22	38.32	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1	[more]
DRB3_ORYSJ	1.6e-21	30.57	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE...	[more]
DRB8_ORYSJ	1.6e-21	31.86	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE...	[more]

BLAST of CmoCh14G008650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCN7_CUCSA	4.5e-71	72.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345370 PE=4 SV=1	[more]
D7TSR3_VITVI	9.5e-61	47.80	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01440 PE=4 SV=...	[more]
A0A067KA91_JATCU	7.8e-55	47.79	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13421 PE=4 SV=1	[more]
A0A0A0LAZ4_CUCSA	3.3e-53	70.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G345380 PE=4 SV=1	[more]
A0A061EHS9_THECC	9.5e-53	44.12	DsRNA-binding domain-like superfamily protein, putative OS=Theobroma cacao GN=TC...	[more]

BLAST of CmoCh14G008650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09700.1	5.4e-23	38.32	dsRNA-binding domain-like superfamily protein	[more]
AT2G28380.1	1.1e-15	32.68	dsRNA-binding protein 2	[more]
AT5G41070.1	1.7e-13	29.38	dsRNA-binding protein 5	[more]

BLAST of CmoCh14G008650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114470\|ref\|XP_008457067.1\|	3.6e-138	73.64	PREDICTED: double-stranded RNA-binding protein 4-like isoform X2 [Cucumis melo]	[more]
gi\|659114468\|ref\|XP_008457066.1\|	8.9e-137	73.44	PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo]	[more]
gi\|778680845\|ref\|XP_011651405.1\|	3.4e-136	72.09	PREDICTED: double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus]	[more]
gi\|449464150\|ref\|XP_004149792.1\|	8.3e-135	71.89	PREDICTED: uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus]	[more]
gi\|778680848\|ref\|XP_011651406.1\|	3.2e-86	74.12	PREDICTED: double-stranded RNA-binding protein 3 isoform X3 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014720	dsRBD_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003725	double-stranded RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G008650.1	CmoCh14G008650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	GENE3D	G3DSA:3.30.160.20		coord: 79..145 score: 1.8E-16coord: 165..229 score: 2.9
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 165..227 score: 4.5E-11coord: 79..144 score: 2.
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 164..229 score: 8.2E-10coord: 79..146 score: 5.7
IPR014720	Double-stranded RNA-binding domain	PROFILE	PS50137	DS_RBD	coord: 78..147 score: 11
None	No IPR available	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 1..295 score: 6.8
None	No IPR available	PANTHER	PTHR11207:SF8	SUBFAMILY NOT NAMED	coord: 1..295 score: 6.8
None	No IPR available	unknown	SSF54768	dsRNA-binding domain-like	coord: 161..228 score: 1.73E-13coord: 75..145 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G008650	CmaCh14G008510	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G008650	Cla013177	Watermelon (97103) v1	cmowmB232
CmoCh14G008650	MELO3C020280	Melon (DHL92) v3.5.1	cmomeB231
CmoCh14G008650	ClCG05G011010	Watermelon (Charleston Gray)	cmowcgB220
CmoCh14G008650	Lsi05G003100	Bottle gourd (USVL1VR-Ls)	cmolsiB237
CmoCh14G008650	Cp4.1LG03g05940	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G008650	MELO3C020280.2	Melon (DHL92) v3.6.1	cmomedB261
CmoCh14G008650	Cla97C05G093280	Watermelon (97103) v2	cmowmbB244
CmoCh14G008650	Bhi01G001352	Wax gourd	cmowgoB0322
CmoCh14G008650	Carg24224	Silver-seed gourd	carcmoB0248

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G008650	Cucurbita moschata (Rifu)	cmocmoB203
CmoCh14G008650	Cucumber (Gy14) v1	cgycmoB0549
CmoCh14G008650	Cucurbita maxima (Rimu)	cmacmoB462
CmoCh14G008650	Wild cucumber (PI 183967)	cmocpiB232
CmoCh14G008650	Cucumber (Chinese Long) v2	cmocuB229
CmoCh14G008650	Cucurbita pepo (Zucchini)	cmocpeB241
CmoCh14G008650	Cucumber (Gy14) v2	cgybcmoB281
CmoCh14G008650	Silver-seed gourd	carcmoB1031
CmoCh14G008650	Cucumber (Chinese Long) v3	cmocucB0272