Cla013103 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013103
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 10883245 .. 10883594 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTCCGGCGGTTACCAAAGGATACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCCAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTGAACAAGGTTTAACTCTTAATTCTCTAATCTTTCAGTTTTGGAATTGTTTTTTTTTTTTTTTTTCTCTCGATTTGTGGATCCGTTTTGAGGGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAATTAA

mRNA sequence

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTCCGGCGGTTACCAAAGGATACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCCAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAATTAA

Coding sequence (CDS)

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTCCGGCGGTTACCAAAGGATACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCCAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAATTAA

Protein sequence

MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVDGSAADKLKEICYN

Homology

[Close]

BLAST of Cla013103 vs. Swiss-Prot
Match: LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-28
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of Cla013103 vs. Swiss-Prot
Match: LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-10
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 8  YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNK 66
          Y EVL+LV+RLP  +R YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Sbjct: 9  YREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

[Close]

BLAST of Cla013103 vs. TrEMBL
Match: A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of Cla013103 vs. TrEMBL
Match: V4SGL4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.2e-33
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+KALR Y  VLRL+RRLPKDTRPYYAKYARENFVNYREVDANDA SL+ELFHRAYNHS+
Sbjct: 1  MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKY V+ SAADKLK+IC
Sbjct: 61 WVLNKYKVEESAADKLKDIC 80

[Close]

BLAST of Cla013103 vs. TrEMBL
Match: A0A0B0Q0M1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.2e-33
Identity = 67/82 (81.71%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y E+LRLVRRLPKD+RPYYAKYARENFVNYR+ DA+D+K+L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYN 83
          WVLNKYSVD SAA KLKEIC++
Sbjct: 61 WVLNKYSVDESAAQKLKEICFH 82

[Close]

BLAST of Cla013103 vs. TrEMBL
Match: A0A061E024_THECC (UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-32
Identity = 66/80 (82.50%), Postives = 76/80 (95.00%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y +VLRLVRRLPKD+RPYYAKYARENFVNYR+VDA+D+K+L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYAQVLRLVRRLPKDSRPYYAKYARENFVNYRDVDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKYSVD +AA KLKE C
Sbjct: 61 WVLNKYSVDETAAQKLKETC 80

[Close]

BLAST of Cla013103 vs. TrEMBL
Match: A0A067LB24_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16266 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.8e-32
Identity = 67/80 (83.75%), Postives = 76/80 (95.00%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+KAL++YGEVLRLVRRLP+D+RPYYAKYARENFVNYREVDAND  +L+ELF RAYNHSV
Sbjct: 1  MQKALKVYGEVLRLVRRLPEDSRPYYAKYARENFVNYREVDANDTNALDELFLRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKYSVD SAA++LKEIC
Sbjct: 61 WVLNKYSVDESAANRLKEIC 80

[Close]

BLAST of Cla013103 vs. NCBI nr
Match: gi|659112342|ref|XP_008456173.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 9.4e-39
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYN 83
          WVLNKYSVDGSAADKLKEICY+
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of Cla013103 vs. NCBI nr
Match: gi|449445916|ref|XP_004140718.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.2e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of Cla013103 vs. NCBI nr
Match: gi|1009150076|ref|XP_015892821.1| (PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 161.4 bits (407), Expect = 6.8e-37
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIYGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYN 83
          WVLNKYSVD SAADKLKE+CYN
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYN 82

[Close]

BLAST of Cla013103 vs. NCBI nr
Match: gi|567860484|ref|XP_006422896.1| (hypothetical protein CICLE_v10029710mg [Citrus clementina])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+KALR Y  VLRL+RRLPKDTRPYYAKYARENFVNYREVDANDA SL+ELFHRAYNHS+
Sbjct: 1  MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKY V+ SAADKLK+IC
Sbjct: 61 WVLNKYKVEESAADKLKDIC 80

[Close]

BLAST of Cla013103 vs. NCBI nr
Match: gi|728850881|gb|KHG30324.1| (hypothetical protein F383_11007 [Gossypium arboreum])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 67/82 (81.71%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y E+LRLVRRLPKD+RPYYAKYARENFVNYR+ DA+D+K+L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYN 83
          WVLNKYSVD SAA KLKEIC++
Sbjct: 61 WVLNKYSVDESAAQKLKEICFH 82

The following BLAST results are available for this feature:

BLAST of Cla013103 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LYRM9_ARATH	1.5e-28	74.07	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3...	[more]
LYRM9_PHYPA	1.1e-10	55.17	LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. p...	[more]

BLAST of Cla013103 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L970_CUCSA	3.6e-37	93.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1	[more]
V4SGL4_9ROSI	9.2e-33	85.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1	[more]
A0A0B0Q0M1_GOSAR	9.2e-33	81.71	Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1	[more]
A0A061E024_THECC	6.0e-32	82.50	UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1	[more]
A0A067LB24_JATCU	7.8e-32	83.75	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16266 PE=3 SV=1	[more]

BLAST of Cla013103 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112342\|ref\|XP_008456173.1\|	9.4e-39	96.34	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo]	[more]
gi\|449445916\|ref\|XP_004140718.1\|	5.2e-37	93.83	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus]	[more]
gi\|1009150076\|ref\|XP_015892821.1\|	6.8e-37	91.46	PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba]	[more]
gi\|567860484\|ref\|XP_006422896.1\|	1.3e-32	85.00	hypothetical protein CICLE_v10029710mg [Citrus clementina]	[more]
gi\|728850881\|gb\|KHG30324.1\|	1.3e-32	81.71	hypothetical protein F383_11007 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008270	zinc ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05048	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013103	Cla013103.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05048	WMU05048	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 4..56 score: 1.
None	No IPR available	PANTHER	PTHR36758	FAMILY NOT NAMED	coord: 1..82 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013103	Cla97C05G092700	Watermelon (97103) v2	wmwmbB206
Cla013103	Csa3G199560	Cucumber (Chinese Long) v2	cuwmB243
Cla013103	MELO3C019551	Melon (DHL92) v3.5.1	mewmB461
Cla013103	ClCG05G010330	Watermelon (Charleston Gray)	wcgwmB286
Cla013103	CSPI03G18100	Wild cucumber (PI 183967)	cpiwmB242
Cla013103	Cucsa.244690	Cucumber (Gy14) v1	cgywmB462
Cla013103	CmaCh04G004690	Cucurbita maxima (Rimu)	cmawmB703
Cla013103	CmoCh04G005000	Cucurbita moschata (Rifu)	cmowmB699
Cla013103	Lsi05G002410	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013103	Cp4.1LG01g02460	Cucurbita pepo (Zucchini)	cpewmB433
Cla013103	CsGy3G018000	Cucumber (Gy14) v2	cgybwmB229
Cla013103	MELO3C019551.2	Melon (DHL92) v3.6.1	medwmB448
Cla013103	Carg08140	Silver-seed gourd	carwmB0371
Cla013103	CsaV3_3G018160	Cucumber (Chinese Long) v3	cucwmB252
Cla013103	Bhi01G001285	Wax gourd	wgowmB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013103	Melon (DHL92) v3.6.1	medwmB226
Cla013103	Melon (DHL92) v3.6.1	medwmB557
Cla013103	Silver-seed gourd	carwmB0288
Cla013103	Cucumber (Chinese Long) v3	cucwmB618
Cla013103	Watermelon (97103) v2	wmwmbB202
Cla013103	Watermelon (97103) v1	wmwmB131
Cla013103	Cucumber (Gy14) v1	cgywmB423
Cla013103	Cucurbita maxima (Rimu)	cmawmB317
Cla013103	Cucurbita maxima (Rimu)	cmawmB496
Cla013103	Cucurbita moschata (Rifu)	cmowmB311
Cla013103	Cucurbita moschata (Rifu)	cmowmB490
Cla013103	Melon (DHL92) v3.5.1	mewmB231
Cla013103	Melon (DHL92) v3.5.1	mewmB568
Cla013103	Watermelon (Charleston Gray)	wcgwmB135
Cla013103	Watermelon (Charleston Gray)	wcgwmB190
Cla013103	Cucumber (Chinese Long) v2	cuwmB590
Cla013103	Cucurbita pepo (Zucchini)	cpewmB228
Cla013103	Bottle gourd (USVL1VR-Ls)	lsiwmB255