CmaCh04G004690 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTAGAAACTGAAGCGATCGAAATCGAGAACCAGACGGCGGAGAATTTCGATCGGAGAGAAATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCAACAGAGCTTACAACCACTCCGTTTGGGTTCTCAACAAGGTTACACTCTAATCCTTCAATTAATCTTTCAGTTTCTTAATTGTTTCTGTATCGATTCGCGTTGATTGCATCGGTCCGATCCGTTTTGAGCGTTTCCGGTGATTGGCAGTATTCGGTGAATGGATCTGCGGCGGACAAGCTGAAGGAGATTTGTAATAGCTCCTAGTTAGTGTGCGATTTCCGTCATTTGTTTGAAATAATGCCTCAAAGGGATCGGCGTTGGCTTTTGCCCTTGCAACTCCGGCTACTACTGCCGCCGTGGATTCTGGCGAATTCGTTGCCGGTACGCTTTTGGAGGATTATTGAATTAAAAATATTTTTATGTTATTCACGTTGAAAAATAAGGTTTGCAAATTATGTTTATAGGATAATTGAGACTAAGTTGTCTATTTAATCAGATAATTGTTTATATAAATAAATAATATTTTATTTAATTCTTAT CCTAGAAACTGAAGCGATCGAAATCGAGAACCAGACGGCGGAGAATTTCGATCGGAGAGAAATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCAACAGAGCTTACAACCACTCCGTTTGGGTTCTCAACAAGTATTCGGTGAATGGATCTGCGGCGGACAAGCTGAAGGAGATTTGTAATAGCTCCTAGTTAGTGTGCGATTTCCGTCATTTGTTTGAAATAATGCCTCAAAGGGATCGGCGTTGGCTTTTGCCCTTGCAACTCCGGCTACTACTGCCGCCGTGGATTCTGGCGAATTCGTTGCCGGTACGCTTTTGGAGGATTATTGAATTAAAAATATTTTTATGTTATTCACGTTGAAAAATAAGGTTTGCAAATTATGTTTATAGGATAATTGAGACTAAGTTGTCTATTTAATCAGATAATTGTTTATATAAATAAATAATATTTTATTTAATTCTTAT ATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCAACAGAGCTTACAACCACTCCGTTTGGGTTCTCAACAAGTATTCGGTGAATGGATCTGCGGCGGACAAGCTGAAGGAGATTTGTAATAGCTCCTAG MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSVWVLNKYSVNGSAADKLKEICNSS
BLAST of CmaCh04G004690 vs. Swiss-Prot
Match: LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 8.4e-27 Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1
BLAST of CmaCh04G004690 vs. Swiss-Prot
Match: LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_186863 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 8.4e-11 Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1
BLAST of CmaCh04G004690 vs. TrEMBL
Match: A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 2.5e-33 Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 1
BLAST of CmaCh04G004690 vs. TrEMBL
Match: A0A0D2V8H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G048100 PE=3 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 7.9e-32 Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 1
BLAST of CmaCh04G004690 vs. TrEMBL
Match: V4SGL4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 3.0e-31 Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1
BLAST of CmaCh04G004690 vs. TrEMBL
Match: A0A0B0Q0M1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 3.0e-31 Identity = 67/80 (83.75%), Postives = 77/80 (96.25%), Query Frame = 1
BLAST of CmaCh04G004690 vs. TrEMBL
Match: A0A061E024_THECC (UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 6.7e-31 Identity = 66/80 (82.50%), Postives = 77/80 (96.25%), Query Frame = 1
BLAST of CmaCh04G004690 vs. TAIR10
Match: AT3G19508.1 (AT3G19508.1 unknown protein) HSP 1 Score: 120.6 bits (301), Expect = 4.7e-28 Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1
BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|659112342|ref|XP_008456173.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo]) HSP 1 Score: 154.8 bits (390), Expect = 6.4e-35 Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 1
BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|449445916|ref|XP_004140718.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus]) HSP 1 Score: 149.1 bits (375), Expect = 3.5e-33 Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 1
BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|1009150076|ref|XP_015892821.1| (PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba]) HSP 1 Score: 146.4 bits (368), Expect = 2.3e-32 Identity = 69/80 (86.25%), Postives = 77/80 (96.25%), Query Frame = 1
BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|823266380|ref|XP_012465891.1| (PREDICTED: LYR motif-containing protein At3g19508 [Gossypium raimondii]) HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31 Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 1
BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|567860484|ref|XP_006422896.1| (hypothetical protein CICLE_v10029710mg [Citrus clementina]) HSP 1 Score: 142.1 bits (357), Expect = 4.3e-31 Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |