CmaCh04G004690 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G004690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLYR motif-containing protein
LocationCma_Chr04 : 2399888 .. 2400584 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTAGAAACTGAAGCGATCGAAATCGAGAACCAGACGGCGGAGAATTTCGATCGGAGAGAAATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCAACAGAGCTTACAACCACTCCGTTTGGGTTCTCAACAAGGTTACACTCTAATCCTTCAATTAATCTTTCAGTTTCTTAATTGTTTCTGTATCGATTCGCGTTGATTGCATCGGTCCGATCCGTTTTGAGCGTTTCCGGTGATTGGCAGTATTCGGTGAATGGATCTGCGGCGGACAAGCTGAAGGAGATTTGTAATAGCTCCTAGTTAGTGTGCGATTTCCGTCATTTGTTTGAAATAATGCCTCAAAGGGATCGGCGTTGGCTTTTGCCCTTGCAACTCCGGCTACTACTGCCGCCGTGGATTCTGGCGAATTCGTTGCCGGTACGCTTTTGGAGGATTATTGAATTAAAAATATTTTTATGTTATTCACGTTGAAAAATAAGGTTTGCAAATTATGTTTATAGGATAATTGAGACTAAGTTGTCTATTTAATCAGATAATTGTTTATATAAATAAATAATATTTTATTTAATTCTTAT

mRNA sequence

CCTAGAAACTGAAGCGATCGAAATCGAGAACCAGACGGCGGAGAATTTCGATCGGAGAGAAATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCAACAGAGCTTACAACCACTCCGTTTGGGTTCTCAACAAGTATTCGGTGAATGGATCTGCGGCGGACAAGCTGAAGGAGATTTGTAATAGCTCCTAGTTAGTGTGCGATTTCCGTCATTTGTTTGAAATAATGCCTCAAAGGGATCGGCGTTGGCTTTTGCCCTTGCAACTCCGGCTACTACTGCCGCCGTGGATTCTGGCGAATTCGTTGCCGGTACGCTTTTGGAGGATTATTGAATTAAAAATATTTTTATGTTATTCACGTTGAAAAATAAGGTTTGCAAATTATGTTTATAGGATAATTGAGACTAAGTTGTCTATTTAATCAGATAATTGTTTATATAAATAAATAATATTTTATTTAATTCTTAT

Coding sequence (CDS)

ATGGAGAAGGCCCTGCGAATATACGCCGAGGTTCTGAGGCTGGTGAGGCGGTTGCCGAAGGATTCGAGGCCTTACTACGCTAAATACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCAACAGAGCTTACAACCACTCCGTTTGGGTTCTCAACAAGTATTCGGTGAATGGATCTGCGGCGGACAAGCTGAAGGAGATTTGTAATAGCTCCTAG

Protein sequence

MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSVWVLNKYSVNGSAADKLKEICNSS
BLAST of CmaCh04G004690 vs. Swiss-Prot
Match: LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 8.4e-27
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          M+K LR+Y  V+RLVR LP DSRPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVL KYS++ SAA KLKEIC
Sbjct: 61 WVLKKYSIDESAATKLKEIC 79

BLAST of CmaCh04G004690 vs. Swiss-Prot
Match: LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.4e-11
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1

Query: 8  YAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSVWVLNK 66
          Y EVL+LV+RLP  SR YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Sbjct: 9  YREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

BLAST of CmaCh04G004690 vs. TrEMBL
Match: A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.5e-33
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELF+RAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKYSV+GSAADKLKEIC
Sbjct: 61 WVLNKYSVDGSAADKLKEIC 80

BLAST of CmaCh04G004690 vs. TrEMBL
Match: A0A0D2V8H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G048100 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-32
Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          MEKALR+YAE+LRLVRRLPKDSRPYYAKYARENFVNYR+ DA+D+K+L+ELF+RAYNHS+
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKYSVN SAA KLKEIC
Sbjct: 61 WVLNKYSVNESAAQKLKEIC 80

BLAST of CmaCh04G004690 vs. TrEMBL
Match: V4SGL4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-31
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          M+KALR YA VLRL+RRLPKD+RPYYAKYARENFVNYREVDANDA SL+ELF+RAYNHS+
Sbjct: 1  MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSI 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKY V  SAADKLK+IC
Sbjct: 61 WVLNKYKVEESAADKLKDIC 80

BLAST of CmaCh04G004690 vs. TrEMBL
Match: A0A0B0Q0M1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-31
Identity = 67/80 (83.75%), Postives = 77/80 (96.25%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          MEKALR+YAE+LRLVRRLPKDSRPYYAKYARENFVNYR+ DA+D+K+L+ELF+RAYNHS+
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKYSV+ SAA KLKEIC
Sbjct: 61 WVLNKYSVDESAAQKLKEIC 80

BLAST of CmaCh04G004690 vs. TrEMBL
Match: A0A061E024_THECC (UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.7e-31
Identity = 66/80 (82.50%), Postives = 77/80 (96.25%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          MEKALR+YA+VLRLVRRLPKDSRPYYAKYARENFVNYR+VDA+D+K+L+ELF+RAYNHS+
Sbjct: 1  MEKALRVYAQVLRLVRRLPKDSRPYYAKYARENFVNYRDVDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKYSV+ +AA KLKE C
Sbjct: 61 WVLNKYSVDETAAQKLKETC 80

BLAST of CmaCh04G004690 vs. TAIR10
Match: AT3G19508.1 (AT3G19508.1 unknown protein)

HSP 1 Score: 120.6 bits (301), Expect = 4.7e-28
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          M+K LR+Y  V+RLVR LP DSRPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVL KYS++ SAA KLKEIC
Sbjct: 61 WVLKKYSIDESAATKLKEIC 79

BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|659112342|ref|XP_008456173.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 6.4e-35
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELF+RAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEICNS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|449445916|ref|XP_004140718.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.5e-33
Identity = 71/80 (88.75%), Postives = 77/80 (96.25%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELF+RAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKYSV+GSAADKLKEIC
Sbjct: 61 WVLNKYSVDGSAADKLKEIC 80

BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|1009150076|ref|XP_015892821.1| (PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-32
Identity = 69/80 (86.25%), Postives = 77/80 (96.25%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          MEKALRIY E+LRLVRRLPKD+RPYYAKYARENFVNYREVDAND+ +LEELF+RAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKYSV+ SAADKLKE+C
Sbjct: 61 WVLNKYSVDQSAADKLKEVC 80

BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|823266380|ref|XP_012465891.1| (PREDICTED: LYR motif-containing protein At3g19508 [Gossypium raimondii])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 68/80 (85.00%), Postives = 77/80 (96.25%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          MEKALR+YAE+LRLVRRLPKDSRPYYAKYARENFVNYR+ DA+D+K+L+ELF+RAYNHS+
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKYSVN SAA KLKEIC
Sbjct: 61 WVLNKYSVNESAAQKLKEIC 80

BLAST of CmaCh04G004690 vs. NCBI nr
Match: gi|567860484|ref|XP_006422896.1| (hypothetical protein CICLE_v10029710mg [Citrus clementina])

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-31
Identity = 67/80 (83.75%), Postives = 74/80 (92.50%), Query Frame = 1

Query: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60
          M+KALR YA VLRL+RRLPKD+RPYYAKYARENFVNYREVDANDA SL+ELF+RAYNHS+
Sbjct: 1  MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSI 60

Query: 61 WVLNKYSVNGSAADKLKEIC 81
          WVLNKY V  SAADKLK+IC
Sbjct: 61 WVLNKYKVEESAADKLKDIC 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LYRM9_ARATH8.4e-2773.75LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3... [more]
LYRM9_PHYPA8.4e-1156.90LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. p... [more]
Match NameE-valueIdentityDescription
A0A0A0L970_CUCSA2.5e-3388.75Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1[more]
A0A0D2V8H7_GOSRA7.9e-3285.00Uncharacterized protein OS=Gossypium raimondii GN=B456_013G048100 PE=3 SV=1[more]
V4SGL4_9ROSI3.0e-3183.75Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1[more]
A0A0B0Q0M1_GOSAR3.0e-3183.75Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1[more]
A0A061E024_THECC6.7e-3182.50UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G19508.14.7e-2873.75 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659112342|ref|XP_008456173.1|6.4e-3591.46PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo][more]
gi|449445916|ref|XP_004140718.1|3.5e-3388.75PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus][more]
gi|1009150076|ref|XP_015892821.1|2.3e-3286.25PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba][more]
gi|823266380|ref|XP_012465891.1|1.1e-3185.00PREDICTED: LYR motif-containing protein At3g19508 [Gossypium raimondii][more]
gi|567860484|ref|XP_006422896.1|4.3e-3183.75hypothetical protein CICLE_v10029710mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G004690.1CmaCh04G004690.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 4..57
score: 2.
NoneNo IPR availablePANTHERPTHR36758FAMILY NOT NAMEDcoord: 1..82
score: 9.5

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G004690Cucurbita moschata (Rifu)cmacmoB718
CmaCh04G004690Cucurbita moschata (Rifu)cmacmoB678
CmaCh04G004690Cucurbita moschata (Rifu)cmacmoB701
CmaCh04G004690Wild cucumber (PI 183967)cmacpiB786
CmaCh04G004690Cucumber (Chinese Long) v2cmacuB775
CmaCh04G004690Cucumber (Chinese Long) v2cmacuB776
CmaCh04G004690Melon (DHL92) v3.5.1cmameB672
CmaCh04G004690Melon (DHL92) v3.5.1cmameB711
CmaCh04G004690Watermelon (Charleston Gray)cmawcgB643
CmaCh04G004690Watermelon (97103) v1cmawmB725
CmaCh04G004690Cucurbita pepo (Zucchini)cmacpeB715
CmaCh04G004690Cucurbita pepo (Zucchini)cmacpeB749
CmaCh04G004690Bottle gourd (USVL1VR-Ls)cmalsiB640
CmaCh04G004690Bottle gourd (USVL1VR-Ls)cmalsiB662
CmaCh04G004690Bottle gourd (USVL1VR-Ls)cmalsiB674
CmaCh04G004690Bottle gourd (USVL1VR-Ls)cmalsiB707
CmaCh04G004690Cucumber (Gy14) v2cgybcmaB247
CmaCh04G004690Cucumber (Gy14) v2cgybcmaB553
CmaCh04G004690Cucumber (Gy14) v2cgybcmaB843
CmaCh04G004690Melon (DHL92) v3.6.1cmamedB754
CmaCh04G004690Melon (DHL92) v3.6.1cmamedB768
CmaCh04G004690Melon (DHL92) v3.6.1cmamedB787
CmaCh04G004690Melon (DHL92) v3.6.1cmamedB801
CmaCh04G004690Silver-seed gourdcarcmaB0255
CmaCh04G004690Silver-seed gourdcarcmaB0408
CmaCh04G004690Silver-seed gourdcarcmaB0634
CmaCh04G004690Cucumber (Chinese Long) v3cmacucB0854
CmaCh04G004690Cucumber (Chinese Long) v3cmacucB0826
CmaCh04G004690Cucumber (Chinese Long) v3cmacucB0914
CmaCh04G004690Cucumber (Chinese Long) v3cmacucB0918
CmaCh04G004690Watermelon (97103) v2cmawmbB744
CmaCh04G004690Watermelon (97103) v2cmawmbB770
CmaCh04G004690Watermelon (97103) v2cmawmbB792
CmaCh04G004690Wax gourdcmawgoB0859
CmaCh04G004690Wax gourdcmawgoB0875
CmaCh04G004690Wax gourdcmawgoB0884
CmaCh04G004690Wax gourdcmawgoB0915
CmaCh04G004690Cucurbita maxima (Rimu)cmacmaB163
CmaCh04G004690Cucurbita maxima (Rimu)cmacmaB351
CmaCh04G004690Cucurbita maxima (Rimu)cmacmaB457
CmaCh04G004690Cucumber (Gy14) v1cgycmaB0232
CmaCh04G004690Cucumber (Gy14) v1cgycmaB0629