CsaV3_3G018160 (gene) Cucumber (Chinese Long) v3

NameCsaV3_3G018160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionLyr motif-containing protein
Locationchr3 : 13920478 .. 13921634 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGATATTTTTAGTTCCAAACAAATTAATATATGGGAATGTATGATGATGGAAAAGGATAGATATAGTGAACTACTTAAAGTGATCATGAAAAATCTCAATTACTAATTCAAATTTTTTATTGTTCCAAATGGACGAAAAAAAACAGATGGAGTGAGAGAAGTTTAGCCTTCTTTGTTCTATTAATTTGGTGGTAGAGGTGGGAGAAGGTTAATTTGGTTTTCAAATGTTCTTATTTTCTTTCTTAAAGAATATATTGGGCCTATTGGGCCTATTGGGCCTATTGAGCCATGATAAACAAAGGAGGGCCTCAAACGAGGAATGATTCTGTGTAATTAAGAAGAGGAAGAAGGGGAATTTGTTGGACCTCGAAGCGGAATTTGATCGGAGACAAATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGGTTTGAACTCTTAAATTCTCTAATCTTGAATTTGTTCCTTTGCTTGTTTTCTTTTCTATGGATTTGTGGATCCGGTTTTTAGGAGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAGTGGTGGGGGATGAAGAGAATAGAATAGAATTGGGGGAATTCAGTAGAGGTAGGGAAATGGAGGATTGAGAGTGAAGACGTAAATTGATATGATTTGGAGTGTTGTTGGATTGGTGTAAAAATAAAGAGTGAAGAACAGAGATGGTCTATATAATTCATGTTTCTATGGATGTGTGGATCCATTTTTGTGATTTTGAATGTTGTTGGATTTGTTTTGGATTGTTGTTAAATAATGTTCTCTTCAAATTTAACGCCATGTAAACAAAACTTTTGAGAAGAATATGGAAACCATTTATTTTAGGCTAAATTACTTTGATTATGAACTATCCAAAATTTTTATAAATGCTTCAAAATACTTTGTCATCAACGAACATATACTTAATTGTCGATATTTCAATGTATTAATTGTGTTCTT

mRNA sequence

ATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAG

Coding sequence (CDS)

ATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAG

Protein sequence

MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSLWVLNKYSVDGSAADKLKEICYG
BLAST of CsaV3_3G018160 vs. NCBI nr
Match: XP_004140718.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_3G199560 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 9.9e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKYSVDGSAADKLKEICYG
Sbjct: 61 WVLNKYSVDGSAADKLKEICYG 82

BLAST of CsaV3_3G018160 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 1.6e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

BLAST of CsaV3_3G018160 vs. NCBI nr
Match: XP_015892821.1 (LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+YGE+LRLVR+LPKDTRPYYAKY RENFVNYREVDA D+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAADKLKE+CY
Sbjct: 61 WVLNKYSVDQSAADKLKEVCY 81

BLAST of CsaV3_3G018160 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKYSV+GSAADKLKEIC
Sbjct: 61 WVLNKYSVNGSAADKLKEIC 80

BLAST of CsaV3_3G018160 vs. NCBI nr
Match: POE75952.1 (lyr motif-containing protein [Quercus suber])

HSP 1 Score: 152.5 bits (384), Expect = 6.2e-34
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA+D+ +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDAKDSNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD S ADKLKEIC+
Sbjct: 61 WVLNKYSVDKSVADKLKEICF 81

BLAST of CsaV3_3G018160 vs. TAIR10
Match: AT3G19508.1 (unknown protein)

HSP 1 Score: 127.5 bits (319), Expect = 3.9e-30
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKY RENFVNYREVD Q   SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVD-QSETSLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

BLAST of CsaV3_3G018160 vs. Swiss-Prot
Match: sp|Q1G3M2|LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 7.0e-29
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKY RENFVNYREVD Q   SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVD-QSETSLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

BLAST of CsaV3_3G018160 vs. Swiss-Prot
Match: sp|A9SNJ1|LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.5e-10
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 6  RVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSLWVLNK 65
          + Y EVL+LV++LP  +R YYA+Y RENFV Y EV  +D +S+  L  R ++H+ WVL K
Sbjct: 7  QAYREVLKLVKRLPPPSRGYYAQYARENFVTYSEV--EDPESIRSLLARVHHHTCWVLKK 64

BLAST of CsaV3_3G018160 vs. TrEMBL
Match: tr|A0A0A0L970|A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.5e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKYSVDGSAADKLKEICYG
Sbjct: 61 WVLNKYSVDGSAADKLKEICYG 82

BLAST of CsaV3_3G018160 vs. TrEMBL
Match: tr|A0A1S3C3W4|A0A1S3C3W4_CUCME (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.0e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

BLAST of CsaV3_3G018160 vs. TrEMBL
Match: tr|A0A2P4J593|A0A2P4J593_QUESU (Lyr motif-containing protein OS=Quercus suber OX=58331 GN=CFP56_23416 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.1e-34
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA+D+ +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDAKDSNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD S ADKLKEIC+
Sbjct: 61 WVLNKYSVDKSVADKLKEICF 81

BLAST of CsaV3_3G018160 vs. TrEMBL
Match: tr|A0A2P5EYL0|A0A2P5EYL0_9ROSA (LYR motif-containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136810 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPK+TRPYYA+Y RENFVNYREVDA D  +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKETRPYYAQYARENFVNYREVDAGDTNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAADKLKE+CY
Sbjct: 61 WVLNKYSVDQSAADKLKEVCY 81

BLAST of CsaV3_3G018160 vs. TrEMBL
Match: tr|A0A2N9JAF8|A0A2N9JAF8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61435 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.0e-33
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+YGEVLRLVR+LP+DTRPYYAKY RENFVNYRE DA D K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRIYGEVLRLVRRLPQDTRPYYAKYARENFVNYREFDANDPKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD S ADKLKEIC+
Sbjct: 61 WVLNKYSVDQSVADKLKEICF 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004140718.19.9e-40100.00PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 ... [more]
XP_008456173.11.6e-3796.30PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo][more]
XP_015892821.12.1e-3486.42LYR motif-containing protein At3g19508 [Ziziphus jujuba][more]
XP_022941949.12.1e-3490.00LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ... [more]
POE75952.16.2e-3486.42lyr motif-containing protein [Quercus suber][more]
Match NameE-valueIdentityDescription
AT3G19508.13.9e-3076.54unknown protein[more]
Match NameE-valueIdentityDescription
sp|Q1G3M2|LYRM9_ARATH7.0e-2976.54LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
sp|A9SNJ1|LYRM9_PHYPA9.5e-1050.00LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. p... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0L970|A0A0A0L970_CUCSA6.5e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=3 SV=1[more]
tr|A0A1S3C3W4|A0A1S3C3W4_CUCME1.0e-3796.30LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P... [more]
tr|A0A2P4J593|A0A2P4J593_QUESU4.1e-3486.42Lyr motif-containing protein OS=Quercus suber OX=58331 GN=CFP56_23416 PE=3 SV=1[more]
tr|A0A2P5EYL0|A0A2P5EYL0_9ROSA1.6e-3385.19LYR motif-containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136810 P... [more]
tr|A0A2N9JAF8|A0A2N9JAF8_FAGSY2.0e-3385.19Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61435 PE=3 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G018160.1CsaV3_3G018160.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 4..56
e-value: 4.4E-6
score: 26.6
NoneNo IPR availablePANTHERPTHR36758FAMILY NOT NAMEDcoord: 1..81

The following gene(s) are paralogous to this gene:

None