CsGy3G018000 (gene) Cucumber (Gy14) v2

NameCsGy3G018000
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionLYR motif-containing protein At3g19508
LocationChr3 : 14153431 .. 14154249 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATGATAAACAAAGGAGGGCCTCAAACGAGGAATGATTCTGTGTAATTAAGAAGAGGAAGAAGGGGAATTTGTTGGACCTCGAAGCGGAATTTGATCGGAGACAAATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGGTTTGAACTCTTAAATTCTCTAATCTTGAATTTGTTCCTTTGCTTGTTTTCTTTTCTATGGATTTGTGGATCCGGTTTTTAGGAGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAGTGGTGGGGGATGAAGAGAATAGAATAGAATTGGGGGAATTCAGTAGAGGTAGGGAAATGGAGGATTGAGAGTGAAGACGTAAATTGATATGATTTGGAGTGTTGTTGGATTGGTGTAAAAATAAAGAGTGAAGAACAGAGATGGTCTATATAATTCATGTTTCTATGGATGTGTGGATCCATTTTTGTGATTTTGAATGTTGTTGGATTTGTTTTGGATTGTTGTTAAATAATGTTCTCTTCAAATTTAACGCCATGTAAACAAAACTTTTGAGAAGAATATGGAAACCATTTATTTTAGGCTAAATTACTTTGATTATGAACTATCCAAAATTTTTATAAATGCTTCAAAATACTTTGTCAT

mRNA sequence

CCATGATAAACAAAGGAGGGCCTCAAACGAGGAATGATTCTGTGTAATTAAGAAGAGGAAGAAGGGGAATTTGTTGGACCTCGAAGCGGAATTTGATCGGAGACAAATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAGTGGTGGGGGATGAAGAGAATAGAATAGAATTGGGGGAATTCAGTAGAGGTAGGGAAATGGAGGATTGAGAGTGAAGACGTAAATTGATATGATTTGGAGTGTTGTTGGATTGGTGTAAAAATAAAGAGTGAAGAACAGAGATGGTCTATATAATTCATGTTTCTATGGATGTGTGGATCCATTTTTGTGATTTTGAATGTTGTTGGATTTGTTTTGGATTGTTGTTAAATAATGTTCTCTTCAAATTTAACGCCATGTAAACAAAACTTTTGAGAAGAATATGGAAACCATTTATTTTAGGCTAAATTACTTTGATTATGAACTATCCAAAATTTTTATAAATGCTTCAAAATACTTTGTCAT

Coding sequence (CDS)

ATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAG

Protein sequence

MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSLWVLNKYSVDGSAADKLKEICYG
BLAST of CsGy3G018000 vs. NCBI nr
Match: XP_004140718.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_3G199560 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.7e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKYSVDGSAADKLKEICYG
Sbjct: 61 WVLNKYSVDGSAADKLKEICYG 82

BLAST of CsGy3G018000 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 163.7 bits (413), Expect = 2.7e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

BLAST of CsGy3G018000 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.7 bits (387), Expect = 2.7e-34
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+Y EVLRLVR+LPKD+RPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKYSV+GSAADKLKEIC
Sbjct: 61 WVLNKYSVNGSAADKLKEIC 80

BLAST of CsGy3G018000 vs. NCBI nr
Match: XP_015892821.1 (LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 153.3 bits (386), Expect = 3.6e-34
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+YGE+LRLVR+LPKDTRPYYAKY RENFVNYREVDA D+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAADKLKE+CY
Sbjct: 61 WVLNKYSVDQSAADKLKEVCY 81

BLAST of CsGy3G018000 vs. NCBI nr
Match: POE75952.1 (lyr motif-containing protein [Quercus suber])

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA+D+ +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDAKDSNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD S ADKLKEIC+
Sbjct: 61 WVLNKYSVDKSVADKLKEICF 81

BLAST of CsGy3G018000 vs. TAIR10
Match: AT3G19508.1 (unknown protein)

HSP 1 Score: 126.7 bits (317), Expect = 6.5e-30
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKY RENFVNYREVD Q   SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVD-QSETSLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

BLAST of CsGy3G018000 vs. Swiss-Prot
Match: sp|Q1G3M2|LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-28
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKY RENFVNYREVD Q   SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVD-QSETSLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

BLAST of CsGy3G018000 vs. Swiss-Prot
Match: sp|A9SNJ1|LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.4e-10
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 6  RVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSLWVLNK 65
          + Y EVL+LV++LP  +R YYA+Y RENFV Y EV  +D +S+  L  R ++H+ WVL K
Sbjct: 7  QAYREVLKLVKRLPPPSRGYYAQYARENFVTYSEV--EDPESIRSLLARVHHHTCWVLKK 64

BLAST of CsGy3G018000 vs. TrEMBL
Match: tr|A0A0A0L970|A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.1e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKYSVDGSAADKLKEICYG
Sbjct: 61 WVLNKYSVDGSAADKLKEICYG 82

BLAST of CsGy3G018000 vs. TrEMBL
Match: tr|A0A1S3C3W4|A0A1S3C3W4_CUCME (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

BLAST of CsGy3G018000 vs. TrEMBL
Match: tr|A0A2P4J593|A0A2P4J593_QUESU (Lyr motif-containing protein OS=Quercus suber OX=58331 GN=CFP56_23416 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.9e-34
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA+D+ +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDAKDSNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD S ADKLKEIC+
Sbjct: 61 WVLNKYSVDKSVADKLKEICF 81

BLAST of CsGy3G018000 vs. TrEMBL
Match: tr|A0A2P5EYL0|A0A2P5EYL0_9ROSA (LYR motif-containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136810 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.6e-33
Identity = 69/81 (85.19%), Postives = 76/81 (93.83%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPK+TRPYYA+Y RENFVNYREVDA D  +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKETRPYYAQYARENFVNYREVDAGDTNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAADKLKE+CY
Sbjct: 61 WVLNKYSVDQSAADKLKEVCY 81

BLAST of CsGy3G018000 vs. TrEMBL
Match: tr|A0A2N9JAF8|A0A2N9JAF8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61435 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.4e-33
Identity = 69/81 (85.19%), Postives = 75/81 (92.59%), Query Frame = 0

Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+YGEVLRLVR+LP+DTRPYYAKY RENFVNYRE DA D K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRIYGEVLRLVRRLPQDTRPYYAKYARENFVNYREFDANDPKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD S ADKLKEIC+
Sbjct: 61 WVLNKYSVDQSVADKLKEICF 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004140718.11.7e-39100.00PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 ... [more]
XP_008456173.12.7e-3796.30PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo][more]
XP_022941949.12.7e-3490.00LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ... [more]
XP_015892821.13.6e-3486.42LYR motif-containing protein At3g19508 [Ziziphus jujuba][more]
POE75952.11.0e-3386.42lyr motif-containing protein [Quercus suber][more]
Match NameE-valueIdentityDescription
AT3G19508.16.5e-3076.54unknown protein[more]
Match NameE-valueIdentityDescription
sp|Q1G3M2|LYRM9_ARATH1.2e-2876.54LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
sp|A9SNJ1|LYRM9_PHYPA9.4e-1050.00LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. p... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0L970|A0A0A0L970_CUCSA1.1e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=3 SV=1[more]
tr|A0A1S3C3W4|A0A1S3C3W4_CUCME1.8e-3796.30LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P... [more]
tr|A0A2P4J593|A0A2P4J593_QUESU6.9e-3486.42Lyr motif-containing protein OS=Quercus suber OX=58331 GN=CFP56_23416 PE=3 SV=1[more]
tr|A0A2P5EYL0|A0A2P5EYL0_9ROSA2.6e-3385.19LYR motif-containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136810 P... [more]
tr|A0A2N9JAF8|A0A2N9JAF8_FAGSY3.4e-3385.19Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61435 PE=3 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G018000.1CsGy3G018000.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 4..56
e-value: 4.4E-6
score: 26.6
NoneNo IPR availablePANTHERPTHR36758FAMILY NOT NAMEDcoord: 1..81

The following gene(s) are paralogous to this gene:

None