MELO3C019551 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019551
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	FAD-binding Berberine family protein
Location	chr6 : 11897392 .. 11897999 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACCTAGAAGCGGTTAGACGGCGGCGAAATGGAGAAGGCGCTGAGAGTATATGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAATCACTCCCTTTGGGTTCTGAACAAGGTTTTAACTCTTGAATTCTCTGATCTTGAATTTGTTCGTTCGTTTGTTTGTTTTGTTTTCCATGTGTTTTAGAGGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAGTGGTGGGGGGTGGGGGAAGAAGTGAATAGAATTCATTAGGGGTAGGGAAGTGGAGGATTATGGGTTCATAAAGAGAAAGTGAGGACGTAAATTGATCTGATTTTGAGTGTTGTTGGATTTGTGTAAAAATAAAGACTAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGTGGTGTCTCTATACTTCATGTTTCTAACTTTGTATCCATTTGTGGATCCACATTTATGATATTGTGATTA

mRNA sequence

GGACCTAGAAGCGGTTAGACGGCGGCGAAATGGAGAAGGCGCTGAGAGTATATGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAATCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAGTGGTGGGGGGTGGGGGAAGAAGTGAATAGAATTCATTAGGGGTAGGGAAGTGGAGGATTATGGGTTCATAAAGAGAAAGTGAGGACGTAAATTGATCTGATTTTGAGTGTTGTTGGATTTGTGTAAAAATAAAGACTAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGTGGTGTCTCTATACTTCATGTTTCTAACTTTGTATCCATTTGTGGATCCACATTTATGATATTGTGATTA

Coding sequence (CDS)

ATGGAGAAGGCGCTGAGAGTATATGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAATCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAG

Protein sequence

MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSLWVLNKYSVDGSAADKLKEICYS*

Homology

[Close]

BLAST of MELO3C019551 vs. Swiss-Prot
Match: LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.3e-29
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of MELO3C019551 vs. Swiss-Prot
Match: LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.4e-11
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1


Query: 6  RVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSLWVLNK 65
          + Y EVL+LV+RLP  +R YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Sbjct: 7  QAYREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

[Close]

BLAST of MELO3C019551 vs. TrEMBL
Match: A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of MELO3C019551 vs. TrEMBL
Match: A0A0B0Q0M1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.2e-33
Identity = 69/81 (85.19%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVY E+LRLVRRLPKD+RPYYAKYARENFVNYR+ DA+D+K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAA KLKEIC+
Sbjct: 61 WVLNKYSVDESAAQKLKEICF 81

[Close]

BLAST of MELO3C019551 vs. TrEMBL
Match: V4SGL4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.3e-33
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          M+KALR Y  VLRL+RRLPKDTRPYYAKYARENFVNYREVDANDA SL+ELFHRAYNHS+
Sbjct: 1  MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKY V+ SAADKLK+IC
Sbjct: 61 WVLNKYKVEESAADKLKDIC 80

[Close]

BLAST of MELO3C019551 vs. TrEMBL
Match: A0A061E024_THECC (UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-32
Identity = 68/80 (85.00%), Postives = 76/80 (95.00%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVY +VLRLVRRLPKD+RPYYAKYARENFVNYR+VDA+D+K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRVYAQVLRLVRRLPKDSRPYYAKYARENFVNYRDVDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKYSVD +AA KLKE C
Sbjct: 61 WVLNKYSVDETAAQKLKETC 80

[Close]

BLAST of MELO3C019551 vs. TrEMBL
Match: A0A0D2V8H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G048100 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.5e-32
Identity = 68/80 (85.00%), Postives = 76/80 (95.00%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVY E+LRLVRRLPKD+RPYYAKYARENFVNYR+ DA+D+K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKYSV+ SAA KLKEIC
Sbjct: 61 WVLNKYSVNESAAQKLKEIC 80

[Close]

BLAST of MELO3C019551 vs. TAIR10
Match: AT3G19508.1 (AT3G19508.1 unknown protein)

HSP 1 Score: 127.9 bits (320), Expect = 3.0e-30
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of MELO3C019551 vs. NCBI nr
Match: gi|659112342|ref|XP_008456173.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of MELO3C019551 vs. NCBI nr
Match: gi|449445916|ref|XP_004140718.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of MELO3C019551 vs. NCBI nr
Match: gi|1009150076|ref|XP_015892821.1| (PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 158.7 bits (400), Expect = 4.4e-36
Identity = 73/82 (89.02%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+YGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVD SAADKLKE+CY+
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYN 82

[Close]

BLAST of MELO3C019551 vs. NCBI nr
Match: gi|728850881|gb|KHG30324.1| (hypothetical protein F383_11007 [Gossypium arboreum])

HSP 1 Score: 148.3 bits (373), Expect = 6.0e-33
Identity = 69/81 (85.19%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVY E+LRLVRRLPKD+RPYYAKYARENFVNYR+ DA+D+K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAA KLKEIC+
Sbjct: 61 WVLNKYSVDESAAQKLKEICF 81

[Close]

BLAST of MELO3C019551 vs. NCBI nr
Match: gi|567860484|ref|XP_006422896.1| (hypothetical protein CICLE_v10029710mg [Citrus clementina])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          M+KALR Y  VLRL+RRLPKDTRPYYAKYARENFVNYREVDANDA SL+ELFHRAYNHS+
Sbjct: 1  MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKY V+ SAADKLK+IC
Sbjct: 61 WVLNKYKVEESAADKLKDIC 80

The following BLAST results are available for this feature:

BLAST of MELO3C019551 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LYRM9_ARATH	5.3e-29	76.54	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3...	[more]
LYRM9_PHYPA	8.4e-11	53.33	LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. p...	[more]

BLAST of MELO3C019551 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L970_CUCSA	1.3e-37	96.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1	[more]
A0A0B0Q0M1_GOSAR	4.2e-33	85.19	Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1	[more]
V4SGL4_9ROSI	9.3e-33	85.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1	[more]
A0A061E024_THECC	2.1e-32	85.00	UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1	[more]
A0A0D2V8H7_GOSRA	3.5e-32	85.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G048100 PE=3 SV=1	[more]

BLAST of MELO3C019551 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19508.1	3.0e-30	76.54	unknown protein	[more]

BLAST of MELO3C019551 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112342\|ref\|XP_008456173.1\|	1.5e-39	100.00	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo]	[more]
gi\|449445916\|ref\|XP_004140718.1\|	1.8e-37	96.30	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus]	[more]
gi\|1009150076\|ref\|XP_015892821.1\|	4.4e-36	89.02	PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba]	[more]
gi\|728850881\|gb\|KHG30324.1\|	6.0e-33	85.19	hypothetical protein F383_11007 [Gossypium arboreum]	[more]
gi\|567860484\|ref\|XP_006422896.1\|	1.3e-32	85.00	hypothetical protein CICLE_v10029710mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C019551T1	MELO3C019551T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 4..57 score: 9.
None	No IPR available	PANTHER	PTHR36758	FAMILY NOT NAMED	coord: 1..82 score: 9.0
None	No IPR available	PANTHER	PTHR36758:SF1	SUBFAMILY NOT NAMED	coord: 1..82 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C019551	Csa3G199560	Cucumber (Chinese Long) v2	cumeB166
MELO3C019551	Cla013103	Watermelon (97103) v1	mewmB461
MELO3C019551	ClCG05G010330	Watermelon (Charleston Gray)	mewcgB427
MELO3C019551	Cla97C05G092700	Watermelon (97103) v2	mewmbB434
MELO3C019551	Bhi01G001285	Wax gourd	mewgoB530
MELO3C019551	CSPI03G18100	Wild cucumber (PI 183967)	cpimeB241
MELO3C019551	Cucsa.244690	Cucumber (Gy14) v1	cgymeB417
MELO3C019551	CmaCh04G004690	Cucurbita maxima (Rimu)	cmameB691
MELO3C019551	CmoCh04G005000	Cucurbita moschata (Rifu)	cmomeB683
MELO3C019551	Lsi05G002410	Bottle gourd (USVL1VR-Ls)	lsimeB368
MELO3C019551	Cp4.1LG01g02460	Cucurbita pepo (Zucchini)	cpemeB412
MELO3C019551	CsGy3G018000	Cucumber (Gy14) v2	cgybmeB210
MELO3C019551	Carg08140	Silver-seed gourd	carmeB0380
MELO3C019551	CsaV3_3G018160	Cucumber (Chinese Long) v3	cucmeB247

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C019551	Melon (DHL92) v3.5.1	memeB090
MELO3C019551	Cucurbita maxima (Rimu)	cmameB298
MELO3C019551	Cucurbita moschata (Rifu)	cmomeB290
MELO3C019551	Cucumber (Chinese Long) v2	cumeB511
MELO3C019551	Cucurbita pepo (Zucchini)	cpemeB192
MELO3C019551	Silver-seed gourd	carmeB0296