Lsi05G002410 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi05G002410
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionLYR motif-containing protein
Locationchr05 : 3169422 .. 3170304 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAAACAGGGCCTCAATGATGAAGGATTCGTATAGTTAAGAACATGAAGAAGGGACGTCGTTGGCCCTAGAAGCGGTCAGACGGCGGCGCATTTTGATCGGAGAGAAATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTGCGGCGGTTACCTAAGGACACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTAAACAAGGTCTAACTCTAAATTCTCTAATCTTTCAATTTTGAAATTGTTTTTTTTTCCCTCTCGATTTGTGGATCCTTTTTGAGGGGGCTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAATGTAAGGATCCGCGTCGGATTTTACAGTTGAAACTCCGGCGGTGGCGGGCATGAATTCTGATGAATTCAGAAGAGGTAGGGAATTGGAGGATTATGGATTTATGTGCCTGCCTATGTGACAATTTAACCTTTGTGATTGTTGGGTTTTCATAGTTCTAAACAATTTTTTTTTCTTTTTTTGAGAAATCTTTTTAGTTCGAACAATTGACGATTTTTTTTTTCTTTTTTTTAATGAGCTTTGGATGATCTAGGCACACAATTTTTTTTTCTTTTCAAAGTACTTTGGATAGTTTTTTCTCGGACAAAATGTACTTTTGATTTATGAAGCTTGGTGTTGATTAGGTTCAAAAAAAATAAATCTAAATAACAGTAGGTTCTCACCATTAGTTTACTAAAGCTTAAACTAATATAAAGTTACTAGAAACAAT

mRNA sequence

AACAAAACAGGGCCTCAATGATGAAGGATTCGTATAGTTAAGAACATGAAGAAGGGACGTCGTTGGCCCTAGAAGCGGTCAGACGGCGGCGCATTTTGATCGGAGAGAAATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTGCGGCGGTTACCTAAGGACACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTAAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAATGTAAGGATCCGCGTCGGATTTTACAGTTGAAACTCCGGCGGTGGCGGGCATGAATTCTGATGAATTCAGAAGAGGTAGGGAATTGGAGGATTATGGATTTATGTGCCTGCCTATGTGACAATTTAACCTTTGTGATTGTTGGGTTTTCATAGTTCTAAACAATTTTTTTTTCTTTTTTTGAGAAATCTTTTTAGTTCGAACAATTGACGATTTTTTTTTTCTTTTTTTTAATGAGCTTTGGATGATCTAGGCACACAATTTTTTTTTCTTTTCAAAGTACTTTGGATAGTTTTTTCTCGGACAAAATGTACTTTTGATTTATGAAGCTTGGTGTTGATTAGGTTCAAAAAAAATAAATCTAAATAACAGTAGGTTCTCACCATTAGTTTACTAAAGCTTAAACTAATATAAAGTTACTAGAAACAAT

Coding sequence (CDS)

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTGCGGCGGTTACCTAAGGACACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCGAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTAAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAA

Protein sequence

MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVDGSAADKLKEICYS
BLAST of Lsi05G002410 vs. Swiss-Prot
Match: LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-28
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

BLAST of Lsi05G002410 vs. Swiss-Prot
Match: LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-10
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1

Query: 8  YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNK 66
          Y EVL+LV+RLP  +R YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Sbjct: 9  YREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

BLAST of Lsi05G002410 vs. TrEMBL
Match: A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.6e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

BLAST of Lsi05G002410 vs. TrEMBL
Match: V4SGL4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.2e-33
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+KALR Y  VLRL+RRLPKDTRPYYAKYARENFVNYREVDANDA SL+ELFHRAYNHS+
Sbjct: 1  MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKY V+ SAADKLK+IC
Sbjct: 61 WVLNKYKVEESAADKLKDIC 80

BLAST of Lsi05G002410 vs. TrEMBL
Match: A0A0B0Q0M1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-32
Identity = 67/81 (82.72%), Postives = 77/81 (95.06%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y E+LRLVRRLPKD+RPYYAKYARENFVNYR+ DA+D+K+L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAA KLKEIC+
Sbjct: 61 WVLNKYSVDESAAQKLKEICF 81

BLAST of Lsi05G002410 vs. TrEMBL
Match: A0A061E024_THECC (UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-32
Identity = 66/80 (82.50%), Postives = 76/80 (95.00%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y +VLRLVRRLPKD+RPYYAKYARENFVNYR+VDA+D+K+L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYAQVLRLVRRLPKDSRPYYAKYARENFVNYRDVDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKYSVD +AA KLKE C
Sbjct: 61 WVLNKYSVDETAAQKLKETC 80

BLAST of Lsi05G002410 vs. TrEMBL
Match: A0A067LB24_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16266 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.8e-32
Identity = 67/80 (83.75%), Postives = 76/80 (95.00%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+KAL++YGEVLRLVRRLP+D+RPYYAKYARENFVNYREVDAND  +L+ELF RAYNHSV
Sbjct: 1  MQKALKVYGEVLRLVRRLPEDSRPYYAKYARENFVNYREVDANDTNALDELFLRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKYSVD SAA++LKEIC
Sbjct: 61 WVLNKYSVDESAANRLKEIC 80

BLAST of Lsi05G002410 vs. TAIR10
Match: AT3G19508.1 (AT3G19508.1 unknown protein)

HSP 1 Score: 126.3 bits (316), Expect = 8.5e-30
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

BLAST of Lsi05G002410 vs. NCBI nr
Match: gi|659112342|ref|XP_008456173.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

BLAST of Lsi05G002410 vs. NCBI nr
Match: gi|449445916|ref|XP_004140718.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 5.2e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

BLAST of Lsi05G002410 vs. NCBI nr
Match: gi|1009150076|ref|XP_015892821.1| (PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 159.5 bits (402), Expect = 2.6e-36
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIYGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVD SAADKLKE+CY+
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYN 82

BLAST of Lsi05G002410 vs. NCBI nr
Match: gi|567860484|ref|XP_006422896.1| (hypothetical protein CICLE_v10029710mg [Citrus clementina])

HSP 1 Score: 147.1 bits (370), Expect = 1.3e-32
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+KALR Y  VLRL+RRLPKDTRPYYAKYARENFVNYREVDANDA SL+ELFHRAYNHS+
Sbjct: 1  MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKY V+ SAADKLK+IC
Sbjct: 61 WVLNKYKVEESAADKLKDIC 80

BLAST of Lsi05G002410 vs. NCBI nr
Match: gi|728850881|gb|KHG30324.1| (hypothetical protein F383_11007 [Gossypium arboreum])

HSP 1 Score: 146.7 bits (369), Expect = 1.7e-32
Identity = 67/81 (82.72%), Postives = 77/81 (95.06%), Query Frame = 1

Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+Y E+LRLVRRLPKD+RPYYAKYARENFVNYR+ DA+D+K+L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAA KLKEIC+
Sbjct: 61 WVLNKYSVDESAAQKLKEICF 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LYRM9_ARATH1.5e-2874.07LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3... [more]
LYRM9_PHYPA1.4e-1055.17LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. p... [more]
Match NameE-valueIdentityDescription
A0A0A0L970_CUCSA3.6e-3793.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1[more]
V4SGL4_9ROSI9.2e-3385.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1[more]
A0A0B0Q0M1_GOSAR1.2e-3282.72Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1[more]
A0A061E024_THECC6.0e-3282.50UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1[more]
A0A067LB24_JATCU7.8e-3283.75Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16266 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G19508.18.5e-3074.07 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659112342|ref|XP_008456173.1|4.2e-3997.56PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo][more]
gi|449445916|ref|XP_004140718.1|5.2e-3793.83PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus][more]
gi|1009150076|ref|XP_015892821.1|2.6e-3690.24PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba][more]
gi|567860484|ref|XP_006422896.1|1.3e-3285.00hypothetical protein CICLE_v10029710mg [Citrus clementina][more]
gi|728850881|gb|KHG30324.1|1.7e-3282.72hypothetical protein F383_11007 [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G002410.1Lsi05G002410.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 4..56
score: 1.
NoneNo IPR availablePANTHERPTHR36758FAMILY NOT NAMEDcoord: 1..82
score: 1.7
NoneNo IPR availablePANTHERPTHR36758:SF1SUBFAMILY NOT NAMEDcoord: 1..82
score: 1.7

The following gene(s) are paralogous to this gene:

None