MELO3C019551.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C019551.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionBnaA05g20560D protein
Locationchr06 : 12974038 .. 12974645 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACCTAGAAGCGGTTAGACGGCGGCGAAATGGAGAAGGCGCTGAGAGTATATGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAATCACTCCCTTTGGGTTCTGAACAAGGTTTTAACTCTTGAATTCTCTGATCTTGAATTTGTTCGTTCGTTTGTTTGTTTTGTTTTCCATGTGTTTTAGAGGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAGTGGTGGGGGGTGGGGGAAGAAGTGAATAGAATTCATTAGGGGTAGGGAAGTGGAGGATTATGGGTTCATAAAGAGAAAGTGAGGACGTAAATTGATCTGATTTTGAGTGTTGTTGGATTTGTGTAAAAATAAAGACTAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGTGGTGTCTCTATACTTCATGTTTCTAACTTTGTATCCATTTGTGGATCCACATTTATGATATTGTGATTA

mRNA sequence

GGACCTAGAAGCGGTTAGACGGCGGCGAAATGGAGAAGGCGCTGAGAGTATATGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAATCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAGTGGTGGGGGGTGGGGGAAGAAGTGAATAGAATTCATTAGGGGTAGGGAAGTGGAGGATTATGGGTTCATAAAGAGAAAGTGAGGACGTAAATTGATCTGATTTTGAGTGTTGTTGGATTTGTGTAAAAATAAAGACTAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGTGGTGTCTCTATACTTCATGTTTCTAACTTTGTATCCATTTGTGGATCCACATTTATGATATTGTGATTA

Coding sequence (CDS)

ATGGAGAAGGCGCTGAGAGTATATGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAATCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAG

Protein sequence

MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSLWVLNKYSVDGSAADKLKEICYS
Homology
[Close]
BLAST of MELO3C019551.2 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 2.8e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]
BLAST of MELO3C019551.2 vs. NCBI nr
Match: XP_004140718.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_3G199560 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 3.5e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]
BLAST of MELO3C019551.2 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.5 bits (402), Expect = 5.0e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

[Close]
BLAST of MELO3C019551.2 vs. NCBI nr
Match: XP_015892821.1 (LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 158.7 bits (400), Expect = 8.5e-36
Identity = 73/82 (89.02%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+YGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVD SAADKLKE+CY+
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYN 82

[Close]
BLAST of MELO3C019551.2 vs. NCBI nr
Match: XP_022983545.1 (LYR motif-containing protein At3g19508 [Cucurbita maxima])

HSP 1 Score: 156.8 bits (395), Expect = 3.2e-35
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELF+RAYNHS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFNRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

[Close]
BLAST of MELO3C019551.2 vs. TAIR10
Match: AT3G19508.1 (unknown protein)

HSP 1 Score: 127.9 bits (320), Expect = 2.9e-30
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]
BLAST of MELO3C019551.2 vs. Swiss-Prot
Match: sp|Q1G3M2|LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.3e-29
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]
BLAST of MELO3C019551.2 vs. Swiss-Prot
Match: sp|A9SNJ1|LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-10
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 6  RVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSLWVLNK 65
          + Y EVL+LV+RLP  +R YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Sbjct: 7  QAYREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

[Close]
BLAST of MELO3C019551.2 vs. TrEMBL
Match: tr|A0A1S3C3W4|A0A1S3C3W4_CUCME (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.9e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]
BLAST of MELO3C019551.2 vs. TrEMBL
Match: tr|A0A0A0L970|A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]
BLAST of MELO3C019551.2 vs. TrEMBL
Match: tr|A0A2N9JAF8|A0A2N9JAF8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61435 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.1e-35
Identity = 72/82 (87.80%), Postives = 78/82 (95.12%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+YGEVLRLVRRLP+DTRPYYAKYARENFVNYRE DAND K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRIYGEVLRLVRRLPQDTRPYYAKYARENFVNYREFDANDPKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVD S ADKLKEIC++
Sbjct: 61 WVLNKYSVDQSVADKLKEICFA 82

[Close]
BLAST of MELO3C019551.2 vs. TrEMBL
Match: tr|A0A2P4J593|A0A2P4J593_QUESU (Lyr motif-containing protein OS=Quercus suber OX=58331 GN=CFP56_23416 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDA D+ +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDAKDSNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD S ADKLKEIC+
Sbjct: 61 WVLNKYSVDKSVADKLKEICF 81

[Close]
BLAST of MELO3C019551.2 vs. TrEMBL
Match: tr|A0A2P5EYL0|A0A2P5EYL0_9ROSA (LYR motif-containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136810 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.4e-34
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRRLPK+TRPYYA+YARENFVNYREVDA D  +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKETRPYYAQYARENFVNYREVDAGDTNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAADKLKE+CY
Sbjct: 61 WVLNKYSVDQSAADKLKEVCY 81

The following BLAST results are available for this feature:
BLAST of MELO3C019551.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008456173.12.8e-39100.00PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo][more]
XP_004140718.13.5e-3796.30PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 ... [more]
XP_022941949.15.0e-3692.68LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ... [more]
XP_015892821.18.5e-3689.02LYR motif-containing protein At3g19508 [Ziziphus jujuba][more]
XP_022983545.13.2e-3591.46LYR motif-containing protein At3g19508 [Cucurbita maxima][more]
BLAST of MELO3C019551.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19508.12.9e-3076.54unknown protein[more]
BLAST of MELO3C019551.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q1G3M2|LYRM9_ARATH5.3e-2976.54LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
sp|A9SNJ1|LYRM9_PHYPA1.4e-1053.33LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. p... [more]
BLAST of MELO3C019551.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C3W4|A0A1S3C3W4_CUCME1.9e-39100.00LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P... [more]
tr|A0A0A0L970|A0A0A0L970_CUCSA2.3e-3796.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=3 SV=1[more]
tr|A0A2N9JAF8|A0A2N9JAF8_FAGSY8.1e-3587.80Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61435 PE=3 SV=1[more]
tr|A0A2P4J593|A0A2P4J593_QUESU1.4e-3488.89Lyr motif-containing protein OS=Quercus suber OX=58331 GN=CFP56_23416 PE=3 SV=1[more]
tr|A0A2P5EYL0|A0A2P5EYL0_9ROSA2.4e-3487.65LYR motif-containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136810 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C019551.2.1MELO3C019551.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 4..56
e-value: 1.1E-5
score: 25.3
NoneNo IPR availablePANTHERPTHR36758FAMILY NOT NAMEDcoord: 1..81

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C019551.2Csa3G199560Cucumber (Chinese Long) v2cumedB238
MELO3C019551.2CSPI03G18100Wild cucumber (PI 183967)cpimedB239
MELO3C019551.2Cucsa.244690Cucumber (Gy14) v1cgymedB412
MELO3C019551.2CmaCh04G004690Cucurbita maxima (Rimu)cmamedB777
MELO3C019551.2CmoCh04G005000Cucurbita moschata (Rifu)cmomedB774
MELO3C019551.2Lsi05G002410Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C019551.2Cp4.1LG01g02460Cucurbita pepo (Zucchini)cpemedB481
MELO3C019551.2CsGy3G018000Cucumber (Gy14) v2cgybmedB215
MELO3C019551.2Cla013103Watermelon (97103) v1medwmB448
MELO3C019551.2ClCG05G010330Watermelon (Charleston Gray)medwcgB417
MELO3C019551.2Cla97C05G092700Watermelon (97103) v2medwmbB424
MELO3C019551.2Bhi01G001285Wax gourdmedwgoB531
MELO3C019551.2Carg08140Silver-seed gourdcarmedB0384
MELO3C019551.2CsaV3_3G018160Cucumber (Chinese Long) v3cucmedB246
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C019551.2Watermelon (97103) v2medwmbB421
MELO3C019551.2Wax gourdmedwgoB558
MELO3C019551.2Cucumber (Gy14) v1cgymedB379
MELO3C019551.2Cucurbita maxima (Rimu)cmamedB151
MELO3C019551.2Cucurbita maxima (Rimu)cmamedB346
MELO3C019551.2Cucurbita moschata (Rifu)cmomedB139
MELO3C019551.2Cucurbita moschata (Rifu)cmomedB332
MELO3C019551.2Cucurbita pepo (Zucchini)cpemedB234
MELO3C019551.2Cucurbita pepo (Zucchini)cpemedB764
MELO3C019551.2Melon (DHL92) v3.6.1medmedB091
MELO3C019551.2Bottle gourd (USVL1VR-Ls)lsimedB280
MELO3C019551.2Watermelon (Charleston Gray)medwcgB413
MELO3C019551.2Watermelon (97103) v1medwmB472
MELO3C019551.2Silver-seed gourdcarmedB0307