Cla97C05G092700 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G092700
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	LYR motif-containing protein At3g19508
Location	Cla97Chr05 : 10835318 .. 10835667 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTCCGGCGGTTACCAAAGGATACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCCAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTGAACAAGGTTTAACTCTTAATTCTCTAATCTTTCAGTTTTGGAATTGTTTTTTTTTTTTTTTTTCTCTCGATTTGTGGATCCGTTTTGAGGGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAATTAA

mRNA sequence

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTCCGGCGGTTACCAAAGGATACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCCAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAATTAA

Coding sequence (CDS)

ATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTCCGGCGGTTACCAAAGGATACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCCAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAATTAA

Protein sequence

MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNKYSVDGSAADKLKEICYN

Homology

[Close]

BLAST of Cla97C05G092700 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYN 83
          WVLNKYSVDGSAADKLKEICY+
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of Cla97C05G092700 vs. NCBI nr
Match: XP_004140718.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_3G199560 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 1.0e-36
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of Cla97C05G092700 vs. NCBI nr
Match: XP_015892821.1 (LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-36
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIYGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYN 83
          WVLNKYSVD SAADKLKE+CYN
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYN 82

[Close]

BLAST of Cla97C05G092700 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-36
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIY EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEIC 81
          WVLNKYSV+GSAADKLKEIC
Sbjct: 61 WVLNKYSVNGSAADKLKEIC 80

[Close]

BLAST of Cla97C05G092700 vs. NCBI nr
Match: XP_022149201.1 (LYR motif-containing protein At3g19508 [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 75/81 (92.59%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIYG VLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSL+ELFHRAYNHSV
Sbjct: 1  MEKALRIYGGVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLQELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAADKL+EIC+
Sbjct: 61 WVLNKYSVDPSAADKLREICF 81

[Close]

BLAST of Cla97C05G092700 vs. TrEMBL
Match: tr|A0A1S3C3W4|A0A1S3C3W4_CUCME (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 79/82 (96.34%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYN 83
          WVLNKYSVDGSAADKLKEICY+
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of Cla97C05G092700 vs. TrEMBL
Match: tr|A0A0A0L970|A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.7e-37
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of Cla97C05G092700 vs. TrEMBL
Match: tr|A0A2P4J593|A0A2P4J593_QUESU (Lyr motif-containing protein OS=Quercus suber OX=58331 GN=CFP56_23416 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDA D+ +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDAKDSNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD S ADKLKEIC+
Sbjct: 61 WVLNKYSVDKSVADKLKEICF 81

[Close]

BLAST of Cla97C05G092700 vs. TrEMBL
Match: tr|A0A2N9JAF8|A0A2N9JAF8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61435 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALRIYGEVLRLVRRLP+DTRPYYAKYARENFVNYRE DAND K+L+ELFHRAYNHS+
Sbjct: 1  MEKALRIYGEVLRLVRRLPQDTRPYYAKYARENFVNYREFDANDPKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD S ADKLKEIC+
Sbjct: 61 WVLNKYSVDQSVADKLKEICF 81

[Close]

BLAST of Cla97C05G092700 vs. TrEMBL
Match: tr|A0A2P5EYL0|A0A2P5EYL0_9ROSA (LYR motif-containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136810 PE=3 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-34
Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          MEKALR+YGEVLRLVRRLPK+TRPYYA+YARENFVNYREVDA D  +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKETRPYYAQYARENFVNYREVDAGDTNALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYN 83
          WVLNKYSVD SAADKLKE+CY+
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYD 82

[Close]

BLAST of Cla97C05G092700 vs. Swiss-Prot
Match: sp|Q1G3M2|LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-28
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of Cla97C05G092700 vs. Swiss-Prot
Match: sp|A9SNJ1|LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-10
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 8  YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSVWVLNK 66
          Y EVL+LV+RLP  +R YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Sbjct: 9  YREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

[Close]

BLAST of Cla97C05G092700 vs. TAIR10
Match: AT3G19508.1 (unknown protein)

HSP 1 Score: 126.3 bits (316), Expect = 8.5e-30
Identity = 60/81 (74.07%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60
          M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHS+
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

The following BLAST results are available for this feature:

BLAST of Cla97C05G092700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456173.1	1.8e-38	96.34	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo]	[more]
XP_004140718.1	1.0e-36	93.83	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 ...	[more]
XP_015892821.1	1.3e-36	91.46	LYR motif-containing protein At3g19508 [Ziziphus jujuba]	[more]
XP_022941949.1	2.9e-36	96.25	LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ...	[more]
XP_022149201.1	1.9e-35	92.59	LYR motif-containing protein At3g19508 [Momordica charantia]	[more]

BLAST of Cla97C05G092700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C3W4\|A0A1S3C3W4_CUCME	1.2e-38	96.34	LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P...	[more]
tr\|A0A0A0L970\|A0A0A0L970_CUCSA	6.7e-37	93.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=3 SV=1	[more]
tr\|A0A2P4J593\|A0A2P4J593_QUESU	1.4e-34	87.65	Lyr motif-containing protein OS=Quercus suber OX=58331 GN=CFP56_23416 PE=3 SV=1	[more]
tr\|A0A2N9JAF8\|A0A2N9JAF8_FAGSY	1.8e-34	88.89	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61435 PE=3 SV=1	[more]
tr\|A0A2P5EYL0\|A0A2P5EYL0_9ROSA	1.8e-34	85.37	LYR motif-containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136810 P...	[more]

BLAST of Cla97C05G092700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q1G3M2\|LYRM9_ARATH	1.5e-28	74.07	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|A9SNJ1\|LYRM9_PHYPA	1.4e-10	55.17	LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. p...	[more]

BLAST of Cla97C05G092700 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19508.1	8.5e-30	74.07	unknown protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G092700.1	Cla97C05G092700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 4..56 e-value: 2.0E-5 score: 24.5
None	No IPR available	PANTHER	PTHR36758	FAMILY NOT NAMED	coord: 1..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G092700	Cla013103	Watermelon (97103) v1	wmwmbB206
Cla97C05G092700	Csa3G199560	Cucumber (Chinese Long) v2	cuwmbB215
Cla97C05G092700	MELO3C019551	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G092700	ClCG05G010330	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G092700	CSPI03G18100	Wild cucumber (PI 183967)	cpiwmbB221
Cla97C05G092700	Cucsa.244690	Cucumber (Gy14) v1	cgywmbB435
Cla97C05G092700	CmaCh04G004690	Cucurbita maxima (Rimu)	cmawmbB763
Cla97C05G092700	CmoCh04G005000	Cucurbita moschata (Rifu)	cmowmbB735
Cla97C05G092700	Lsi05G002410	Bottle gourd (USVL1VR-Ls)	lsiwmbB329
Cla97C05G092700	CsGy3G018000	Cucumber (Gy14) v2	cgybwmbB206
Cla97C05G092700	MELO3C019551.2	Melon (DHL92) v3.6.1	medwmbB424
Cla97C05G092700	Carg08140	Silver-seed gourd	carwmbB0396
Cla97C05G092700	CsaV3_3G018160	Cucumber (Chinese Long) v3	cucwmbB217
Cla97C05G092700	Bhi01G001285	Wax gourd	wgowmbB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G092700	Watermelon (97103) v2	wmbwmbB021
Cla97C05G092700	Watermelon (97103) v2	wmbwmbB101
Cla97C05G092700	Silver-seed gourd	carwmbB0304
Cla97C05G092700	Cucumber (Gy14) v1	cgywmbB396
Cla97C05G092700	Cucurbita maxima (Rimu)	cmawmbB347
Cla97C05G092700	Cucurbita maxima (Rimu)	cmawmbB536
Cla97C05G092700	Cucurbita moschata (Rifu)	cmowmbB332
Cla97C05G092700	Cucurbita moschata (Rifu)	cmowmbB516
Cla97C05G092700	Wild cucumber (PI 183967)	cpiwmbB567
Cla97C05G092700	Cucumber (Chinese Long) v3	cucwmbB562
Cla97C05G092700	Cucumber (Chinese Long) v2	cuwmbB541
Cla97C05G092700	Bottle gourd (USVL1VR-Ls)	lsiwmbB236
Cla97C05G092700	Melon (DHL92) v3.6.1	medwmbB178
Cla97C05G092700	Melon (DHL92) v3.6.1	medwmbB543
Cla97C05G092700	Melon (DHL92) v3.5.1	mewmbB192
Cla97C05G092700	Melon (DHL92) v3.5.1	mewmbB549
Cla97C05G092700	Watermelon (Charleston Gray)	wcgwmbB159
Cla97C05G092700	Watermelon (97103) v1	wmwmbB343
Cla97C05G092700	Wax gourd	wgowmbB258