CSPI03G18100 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G18100
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	UPF0631 protein
Location	Chr3 : 13777570 .. 13778302 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGTGTAATTAAGAAGAGGAAGAAGGGGAATTTGTTGGACCTCGAAGCGGAATTTGATCGGAGACAAATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGGTTTGAACTCTTAAATTCTCTAATCTTGAATTTGTTCCTTTGCTTGTTTTCTTTTCTATGGATTTGTGGATCCGGTTTTTAGGAGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAGTGGTGGGGGATGAAGAGAATAGAATAGAATTGGGGGAATTCAGTAGAGGTAGGGAAATGGAGGATTGAGAGTGAAGACGTAAATTGATATGATTTGGAGTGTTGTTGGATTGGTGTAAAAATAAAGAGTGAAGAACAGAGATGGTCTATATAATTCATGTTTCTATGGATGTGTGGATCCATTTTTGTGATTTTGAATGTTGTTGGATTTGTTTTGGATTGTTGTTAAATAATGTTCTCTTCAAATTTAACGCCATGTAAACAAAACTTTTGAGAAGAATATGGAAACCATTTATTTTAGGCTAAATTACTTTGA

mRNA sequence

ATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAG

Coding sequence (CDS)

ATGGAGAAGGCGCTGAGAGTATACGGAGAAGTTTTGAGGTTAGTGCGGCAGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGTTAGAGAGAATTTCGTCAACTATAGAGAGGTCGATGCGCAGGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATGGTTAG

Homology

[Close]

BLAST of CSPI03G18100 vs. Swiss-Prot
Match: LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.9e-29
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKY RENFVNYREVD Q   SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVD-QSETSLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of CSPI03G18100 vs. Swiss-Prot
Match: LYRM9_PHYPA (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 9.3e-10
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 6  RVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSLWVLNK 65
          + Y EVL+LV++LP  +R YYA+Y RENFV Y EV  +D +S+  L  R ++H+ WVL K
Sbjct: 7  QAYREVLKLVKRLPPPSRGYYAQYARENFVTYSEV--EDPESIRSLLARVHHHTCWVLKK 64

[Close]

BLAST of CSPI03G18100 vs. TrEMBL
Match: A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.5e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKYSVDGSAADKLKEICYG
Sbjct: 61 WVLNKYSVDGSAADKLKEICYG 82

[Close]

BLAST of CSPI03G18100 vs. TrEMBL
Match: A0A0B0Q0M1_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.1e-32
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVY E+LRLVR+LPKD+RPYYAKY RENFVNYR+ DA D+K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAA KLKEIC+
Sbjct: 61 WVLNKYSVDESAAQKLKEICF 81

[Close]

BLAST of CSPI03G18100 vs. TrEMBL
Match: A0A061E024_THECC (UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-32
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVY +VLRLVR+LPKD+RPYYAKY RENFVNYR+VDA D+K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRVYAQVLRLVRRLPKDSRPYYAKYARENFVNYRDVDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKYSVD +AA KLKE C G
Sbjct: 61 WVLNKYSVDETAAQKLKETCVG 82

[Close]

BLAST of CSPI03G18100 vs. TrEMBL
Match: V4SGL4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.0e-32
Identity = 66/82 (80.49%), Postives = 73/82 (89.02%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          M+KALR Y  VLRL+R+LPKDTRPYYAKY RENFVNYREVDA DA SL+ELFHRAYNHS+
Sbjct: 1  MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDASSLDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKY V+ SAADKLK+IC G
Sbjct: 61 WVLNKYKVEESAADKLKDICCG 82

[Close]

BLAST of CSPI03G18100 vs. TrEMBL
Match: A0A059AN05_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01095 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.0e-31
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKD+RPYYAKY RENFVNYR+ DA D  +L+ELFHRAYNHS+
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDSRPYYAKYARENFVNYRDADAADPSALDELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKYSV+ SAA +LKEIC G
Sbjct: 61 WVLNKYSVEESAAHRLKEICLG 82

[Close]

BLAST of CSPI03G18100 vs. TAIR10
Match: AT3G19508.1 (AT3G19508.1 unknown protein)

HSP 1 Score: 127.5 bits (319), Expect = 3.9e-30
Identity = 62/81 (76.54%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKY RENFVNYREVD Q   SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVD-QSETSLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of CSPI03G18100 vs. NCBI nr
Match: gi|449445916|ref|XP_004140718.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 5.1e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKYSVDGSAADKLKEICYG
Sbjct: 61 WVLNKYSVDGSAADKLKEICYG 82

[Close]

BLAST of CSPI03G18100 vs. NCBI nr
Match: gi|659112342|ref|XP_008456173.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 8.1e-38
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of CSPI03G18100 vs. NCBI nr
Match: gi|1009150076|ref|XP_015892821.1| (PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-34
Identity = 70/81 (86.42%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALR+YGE+LRLVR+LPKDTRPYYAKY RENFVNYREVDA D+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAADKLKE+CY
Sbjct: 61 WVLNKYSVDQSAADKLKEVCY 81

[Close]

BLAST of CSPI03G18100 vs. NCBI nr
Match: gi|728850881|gb|KHG30324.1| (hypothetical protein F383_11007 [Gossypium arboreum])

HSP 1 Score: 146.0 bits (367), Expect = 3.0e-32
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVY E+LRLVR+LPKD+RPYYAKY RENFVNYR+ DA D+K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRVYAEMLRLVRRLPKDSRPYYAKYARENFVNYRDFDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVD SAA KLKEIC+
Sbjct: 61 WVLNKYSVDESAAQKLKEICF 81

[Close]

BLAST of CSPI03G18100 vs. NCBI nr
Match: gi|590687060|ref|XP_007042558.1| (UPF0631 protein [Theobroma cacao])

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-32
Identity = 67/82 (81.71%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60
          MEKALRVY +VLRLVR+LPKD+RPYYAKY RENFVNYR+VDA D+K+L+ELFHRAYNHSL
Sbjct: 1  MEKALRVYAQVLRLVRRLPKDSRPYYAKYARENFVNYRDVDASDSKALDELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYG 83
          WVLNKYSVD +AA KLKE C G
Sbjct: 61 WVLNKYSVDETAAQKLKETCVG 82

The following BLAST results are available for this feature:

BLAST of CSPI03G18100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LYRM9_ARATH	6.9e-29	76.54	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3...	[more]
LYRM9_PHYPA	9.3e-10	50.00	LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrella patens subsp. p...	[more]

BLAST of CSPI03G18100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L970_CUCSA	3.5e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1	[more]
A0A0B0Q0M1_GOSAR	2.1e-32	82.72	Uncharacterized protein OS=Gossypium arboreum GN=F383_11007 PE=3 SV=1	[more]
A0A061E024_THECC	2.7e-32	81.71	UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1	[more]
V4SGL4_9ROSI	6.0e-32	80.49	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1	[more]
A0A059AN05_EUCGR	1.0e-31	80.49	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01095 PE=3 SV=1	[more]

BLAST of CSPI03G18100 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19508.1	3.9e-30	76.54	unknown protein	[more]

BLAST of CSPI03G18100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445916\|ref\|XP_004140718.1\|	5.1e-40	100.00	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus]	[more]
gi\|659112342\|ref\|XP_008456173.1\|	8.1e-38	96.30	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo]	[more]
gi\|1009150076\|ref\|XP_015892821.1\|	1.1e-34	86.42	PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba]	[more]
gi\|728850881\|gb\|KHG30324.1\|	3.0e-32	82.72	hypothetical protein F383_11007 [Gossypium arboreum]	[more]
gi\|590687060\|ref\|XP_007042558.1\|	3.9e-32	81.71	UPF0631 protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G18100.1	CSPI03G18100.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 4..57 score: 3.
None	No IPR available	PANTHER	PTHR36758	FAMILY NOT NAMED	coord: 1..82 score: 2.2
None	No IPR available	PANTHER	PTHR36758:SF1	SUBFAMILY NOT NAMED	coord: 1..82 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G18100	Cla013103	Watermelon (97103) v1	cpiwmB242
CSPI03G18100	Csa3G199560	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G18100	MELO3C019551	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G18100	ClCG05G010330	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G18100	Lsi05G002410	Bottle gourd (USVL1VR-Ls)	cpilsiB209
CSPI03G18100	MELO3C019551.2	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G18100	CsaV3_3G018160	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G18100	Cla97C05G092700	Watermelon (97103) v2	cpiwmbB221
CSPI03G18100	Bhi01G001285	Wax gourd	cpiwgoB283
CSPI03G18100	Cucsa.244690	Cucumber (Gy14) v1	cgycpiB366
CSPI03G18100	CmaCh04G004690	Cucurbita maxima (Rimu)	cmacpiB705
CSPI03G18100	CmoCh04G005000	Cucurbita moschata (Rifu)	cmocpiB698
CSPI03G18100	Cp4.1LG01g02460	Cucurbita pepo (Zucchini)	cpecpiB388
CSPI03G18100	CsGy3G018000	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G18100	Carg08140	Silver-seed gourd	carcpiB0405

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G18100	Watermelon (97103) v2	cpiwmbB203
CSPI03G18100	Wax gourd	cpiwgoB311
CSPI03G18100	Wild cucumber (PI 183967)	cpicpiB144
CSPI03G18100	Cucumber (Gy14) v1	cgycpiB333
CSPI03G18100	Cucurbita maxima (Rimu)	cmacpiB125
CSPI03G18100	Cucurbita maxima (Rimu)	cmacpiB326
CSPI03G18100	Cucurbita maxima (Rimu)	cmacpiB520
CSPI03G18100	Cucurbita moschata (Rifu)	cmocpiB120
CSPI03G18100	Cucurbita moschata (Rifu)	cmocpiB315
CSPI03G18100	Cucurbita moschata (Rifu)	cmocpiB510
CSPI03G18100	Cucumber (Chinese Long) v2	cpicuB165
CSPI03G18100	Melon (DHL92) v3.5.1	cpimeB185
CSPI03G18100	Watermelon (Charleston Gray)	cpiwcgB217
CSPI03G18100	Watermelon (97103) v1	cpiwmB271
CSPI03G18100	Cucurbita pepo (Zucchini)	cpecpiB208
CSPI03G18100	Cucurbita pepo (Zucchini)	cpecpiB680
CSPI03G18100	Bottle gourd (USVL1VR-Ls)	cpilsiB188
CSPI03G18100	Melon (DHL92) v3.6.1	cpimedB180
CSPI03G18100	Silver-seed gourd	carcpiB0326
CSPI03G18100	Cucumber (Chinese Long) v3	cpicucB193