WMU05048 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU05048
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	LYR motif-containing protein
Location	Chr5 : 10883075 .. 10883656 (-)
Sequence length	481

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGAAGAAGGGACTTTGTTGGCCCTAGAAGCGGTCAGACGGCGGCGCATTGATCGGAGAGAAAATGGAGAAGGCCCTGAGAATATACGGCGAAGTTTTGAGGTTAGTCCGGCGGTTACCAAAGGATACGAGGCCTTACTACGCCAAGTACGCTCGAGAGAATTTCGTCAACTACAGAGAAGTCGATGCCAACGATGCCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTATAACCACTCCGTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAATTAATGTAAGGACCCGCGTCGGATTTTTACAGTTGAAACTCCGGCGGTGGCGGGCATGAATTCTGATGAATTCAATAGAGGTAGGGAATTGGAGGATTATGGATTTAAAAAGAAAGTATTAGATACAATCATCATTCTGTTTTTCTGTTATATAATGTAATTTTGTTATTTAC

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 26d library	1
watermelon fruit 34d library	1

Homology

[Close]

BLAST of WMU05048 vs. TAIR10
Match: AT3G19508.1 (AT3G19508.1 unknown protein)

HSP 1 Score: 74.7 bits (182), Expect = 5.7e-14
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKI 122
           M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  +
Sbjct: 1   MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSETSL 47

Query: 123  182
           
Sbjct: 61   47

Query: 183  204
           
Sbjct: 121  47

HSP 2 Score: 61.6 bits (148), Expect = 5.0e-10
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1


Query: 202 SLEELFHRAYNHSVWVLNKYSVDGSAADKLKEICY 261
           SL+ELF RAYNHS+WVL KYS+D SAA KLKEIC+
Sbjct: 46  SLDELFQRAYNHSLWVLKKYSIDESAATKLKEICF 80

Query: 262  307
           
Sbjct: 106  80

[Close]

BLAST of WMU05048 vs. Swiss-Prot
Match: LYRM9_ARATH (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKI 122
           M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  +
Sbjct: 1   MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSETSL 47

Query: 123  182
           
Sbjct: 61   47

Query: 183  204
           
Sbjct: 121  47

HSP 2 Score: 61.6 bits (148), Expect = 8.9e-09
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1


Query: 202 SLEELFHRAYNHSVWVLNKYSVDGSAADKLKEICY 261
           SL+ELF RAYNHS+WVL KYS+D SAA KLKEIC+
Sbjct: 46  SLDELFQRAYNHSLWVLKKYSIDESAATKLKEICF 80

Query: 262  307
           
Sbjct: 106  80

[Close]

BLAST of WMU05048 vs. TrEMBL
Match: A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.0e-15
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAK 122
           MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAK
Sbjct: 1   MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAK 46

Query: 123  182
           
Sbjct: 61   46

Query: 183  201
           
Sbjct: 121  46

[Close]

BLAST of WMU05048 vs. TrEMBL
Match: A0A0A0L970_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = 1


Query: 199 KSLEELFHRAYNHSVWVLNKYSVDGSAADKLKEICY 258
           KSLEELFHRAYNHS+WVLNKYSVDGSAADKLKEICY
Sbjct: 46  KSLEELFHRAYNHSLWVLNKYSVDGSAADKLKEICY 81

Query: 259  307
           
Sbjct: 106  81

HSP 2 Score: 87.0 bits (214), Expect = 2.2e-14
Identity = 39/44 (88.64%), Postives = 44/44 (100.00%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDAND 122
           M+KAL++YGEVLRLVRRLP+D+RPYYAKYARENFVNYREVDAND
Sbjct: 1   MQKALKVYGEVLRLVRRLPEDSRPYYAKYARENFVNYREVDAND 44

Query: 123  182
           
Sbjct: 61   44

Query: 183  195
           
Sbjct: 121  44

[Close]

BLAST of WMU05048 vs. TrEMBL
Match: A0A067LB24_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16266 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.9e-07
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 202 SLEELFHRAYNHSVWVLNKYSVDGSAADKLKEIC 261
           +L+ELF RAYNHSVWVLNKYSVD SAA++LKEIC
Sbjct: 47  ALDELFLRAYNHSVWVLNKYSVDESAANRLKEIC 80

Query: 262  304
           
Sbjct: 107  80

HSP 2 Score: 86.7 bits (213), Expect = 2.9e-14
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAK 122
           MEKALR+Y +VLRLVRRLPKD+RPYYAKYARENFVNYR+VDA+D+K
Sbjct: 1   MEKALRVYAQVLRLVRRLPKDSRPYYAKYARENFVNYRDVDASDSK 46

Query: 123  182
           
Sbjct: 61   46

Query: 183  201
           
Sbjct: 121  46

[Close]

BLAST of WMU05048 vs. TrEMBL
Match: A0A061E024_THECC (UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-07
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 199 KSLEELFHRAYNHSVWVLNKYSVDGSAADKLKEIC 258
           K+L+ELFHRAYNHS+WVLNKYSVD +AA KLKE C
Sbjct: 46  KALDELFHRAYNHSLWVLNKYSVDETAAQKLKETC 80

Query: 259  304
           
Sbjct: 106  80

HSP 2 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDA 122
           M+KALR Y  VLRL+RRLPKDTRPYYAKYARENFVNYREVDANDA
Sbjct: 1   MDKALRAYATVLRLIRRLPKDTRPYYAKYARENFVNYREVDANDA 45

Query: 123  182
           
Sbjct: 61   45

Query: 183  198
           
Sbjct: 121  45

[Close]

BLAST of WMU05048 vs. TrEMBL
Match: V4SGL4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-08
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1


Query: 202 SLEELFHRAYNHSVWVLNKYSVDGSAADKLKEIC 261
           SL+ELFHRAYNHS+WVLNKY V+ SAADKLK+IC
Sbjct: 47  SLDELFHRAYNHSIWVLNKYKVEESAADKLKDIC 80

Query: 262  304
           
Sbjct: 107  80

HSP 2 Score: 86.3 bits (212), Expect = 3.7e-14
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDAND 122
           M+KALR+YGEVLRLVR+LP DTRPYYAKYARENFVNYREVD+ND
Sbjct: 1   MQKALRVYGEVLRLVRQLPADTRPYYAKYARENFVNYREVDSND 44

Query: 123  182
           
Sbjct: 61   44

Query: 183  195
           
Sbjct: 121  44

[Close]

BLAST of WMU05048 vs. NCBI nr
Match: gi|659112342|ref|XP_008456173.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 5.2e-17
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAK 122
           MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAK
Sbjct: 1   MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAK 46

Query: 123  182
           
Sbjct: 61   46

Query: 183  201
           
Sbjct: 121  46

[Close]

BLAST of WMU05048 vs. NCBI nr
Match: gi|1009150076|ref|XP_015892821.1| (PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 93.2 bits (230), Expect = 4.4e-16
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDA 122
           MEKALRIYGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+
Sbjct: 1   MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDS 45

Query: 123  182
           
Sbjct: 61   45

Query: 183  198
           
Sbjct: 121  45

[Close]

BLAST of WMU05048 vs. NCBI nr
Match: gi|449445916|ref|XP_004140718.1| (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAK 122
           MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAK
Sbjct: 1   MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAK 46

Query: 123  182
           
Sbjct: 61   46

Query: 183  201
           
Sbjct: 121  46

[Close]

BLAST of WMU05048 vs. NCBI nr
Match: gi|657977358|ref|XP_008380588.1| (PREDICTED: LYR motif-containing protein At3g19508 [Malus domestica])

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAK 122
           MEKAL+IYGEVLRLVRRLPKD++PYYAKYARENFVNYREV+AND K
Sbjct: 1   MEKALKIYGEVLRLVRRLPKDSQPYYAKYARENFVNYREVEANDDK 46

Query: 123  182
           
Sbjct: 61   46

Query: 183  201
           
Sbjct: 121  46

[Close]

BLAST of WMU05048 vs. NCBI nr
Match: gi|802550567|ref|XP_012092964.1| (PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas])

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 39/44 (88.64%), Postives = 44/44 (100.00%), Query Frame = 3


Query: 63  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDAND 122
           M+KAL++YGEVLRLVRRLP+D+RPYYAKYARENFVNYREVDAND
Sbjct: 1   MQKALKVYGEVLRLVRRLPEDSRPYYAKYARENFVNYREVDAND 44

Query: 123  182
           
Sbjct: 61   44

Query: 183  195
           
Sbjct: 121  44

The following BLAST results are available for this feature:

BLAST of WMU05048 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G19508.1	5.7e-14	70.21	unknown protein	[more]

BLAST of WMU05048 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LYRM9_ARATH	1.0e-12	70.21	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana GN=At3g19508 PE=3...	[more]

BLAST of WMU05048 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L970_CUCSA	2.0e-15	91.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1	[more]
A0A0A0L970_CUCSA	1.3e-11	97.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G199560 PE=3 SV=1	[more]
A0A067LB24_JATCU	9.9e-07	82.35	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16266 PE=3 SV=1	[more]
A0A061E024_THECC	1.5e-07	80.00	UPF0631 protein OS=Theobroma cacao GN=TCM_007162 PE=3 SV=1	[more]
V4SGL4_9ROSI	6.9e-08	82.35	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029710mg PE=3 SV=1	[more]

BLAST of WMU05048 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112342\|ref\|XP_008456173.1\|	5.2e-17	97.83	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo]	[more]
gi\|1009150076\|ref\|XP_015892821.1\|	4.4e-16	95.56	PREDICTED: LYR motif-containing protein At3g19508 [Ziziphus jujuba]	[more]
gi\|449445916\|ref\|XP_004140718.1\|	2.2e-15	91.30	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis sativus]	[more]
gi\|657977358\|ref\|XP_008380588.1\|	1.1e-14	89.13	PREDICTED: LYR motif-containing protein At3g19508 [Malus domestica]	[more]
gi\|802550567\|ref\|XP_012092964.1\|	2.4e-14	88.64	PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla013103	Cla013103	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0154719	S1_0154719	EST
S3_0163349	S3_0163349	EST
S4_0004177	S4_0004177	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36758	FAMILY NOT NAMED	coord: 67..104 score: 2.2
None	No IPR available	PANTHER	PTHR36758:SF1	SUBFAMILY NOT NAMED	coord: 67..104 score: 2.2