Cla006265 (gene) Watermelon (97103) v1

NameCla006265
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPectinesterase/pectinesterase inhibitor 3 (AHRD V1 **-* PME3_ARATH); contains Interpro domain(s) IPR006501 Pectinesterase inhibitor
LocationChr5 : 7458940 .. 7459952 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCTTCTCTCAAAGCTGCACAAAATGCCACCTCCATCGTCTCCAAACTCTCCCGGAAGAAGGTGTCGCCCTACGAAGCCCAAGTCCTTAGAGATTGCATTGATAATCTCAATGACTCCGTCGACGAGCTCCGTCAAGCTATCGCTGCCATTAAAAGCTTGAGTCCGCGGTCTAACGATGTGGAGTTCCAGGTTGTTAAAAACTACTACTACTTAATCCAATGACGTTTTAATCTTATATTCATTTTAGGTTAAAATAACAATTTTGGTGTTAACTTCTTTTTCTTCACTTTAATAAGTAACAAACTTTTAAATTTGTGAAAATTGTCCTACCGATTTATAATTTGTTATGGTATAGTCTTTATCGTGAAAATTTTGGTCAAAATTAAGTATCAATTCTTATTTCGTAATGACTTAGTCTTTATAGTTTATAAATAAATTGGATTTTAAATCAATTTATATGAAAGAAATTTCATACCAATATTTTTATGATAGGGACTAAATCATTATTTATTAAAGTTGAGGAATTGAATTGTTTTAAAATTGAAATTATAGGAACTAAGTCGTTACCAACTAAAATTTAGAGACTAAATTTATACTTCATGAAACTTAAAAGTATTTTTTAACATTAAAATTATTACGTACACGGATGTACGAGTAAAATTTGAACCTACAACAAGTTCTTAAAAAAAAAAAAAAAAAGGGGTTAAGAATTCTTGTTACTTGAAGATTATGTTGACATGATACGGTATAATTCAAATATTAGTTTCTAACTCTAAAGTTAGGGTAAACATAATCTTTTATTCATATTTTGAACGCAGTTGAGTAGTATAAAGACGTGGATGAGCGCGGCAGAGACGGATGTTATCACGTGCACCGACGGGTTGAGCGGCGGGGCAGGGCGGAAGGTGAGCCAGAAGGTGAAGAAAGAGGTGAAGAATTGTAGTGTGAATGTAGTAAGGCAGATTAGCAATGCCTTGTCTCTCGTCAACAACTTCAACTTCAAATAG

mRNA sequence

ATGGTTTCTTCTCTCAAAGCTGCACAAAATGCCACCTCCATCGTCTCCAAACTCTCCCGGAAGAAGGTGTCGCCCTACGAAGCCCAAGTCCTTAGAGATTGCATTGATAATCTCAATGACTCCGTCGACGAGCTCCGTCAAGCTATCGCTGCCATTAAAAGCTTGAGTCCGCGGTCTAACGATGTGGAGTTCCAGTTGAGTAGTATAAAGACGTGGATGAGCGCGGCAGAGACGGATGTTATCACGTGCACCGACGGGTTGAGCGGCGGGGCAGGGCGGAAGGTGAGCCAGAAGGTGAAGAAAGAGGTGAAGAATTGTAGTGTGAATGTAGTAAGGCAGATTAGCAATGCCTTGTCTCTCGTCAACAACTTCAACTTCAAATAG

Coding sequence (CDS)

ATGGTTTCTTCTCTCAAAGCTGCACAAAATGCCACCTCCATCGTCTCCAAACTCTCCCGGAAGAAGGTGTCGCCCTACGAAGCCCAAGTCCTTAGAGATTGCATTGATAATCTCAATGACTCCGTCGACGAGCTCCGTCAAGCTATCGCTGCCATTAAAAGCTTGAGTCCGCGGTCTAACGATGTGGAGTTCCAGTTGAGTAGTATAAAGACGTGGATGAGCGCGGCAGAGACGGATGTTATCACGTGCACCGACGGGTTGAGCGGCGGGGCAGGGCGGAAGGTGAGCCAGAAGGTGAAGAAAGAGGTGAAGAATTGTAGTGTGAATGTAGTAAGGCAGATTAGCAATGCCTTGTCTCTCGTCAACAACTTCAACTTCAAATAG

Protein sequence

MVSSLKAAQNATSIVSKLSRKKVSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSNDVEFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLVNNFNFK
BLAST of Cla006265 vs. Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-15
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 1

Query: 4   SLKAAQNATSIVSKLSR-KKVSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLS-PRSND 63
           SL   Q A + + +L++ K +   +   + DC++ + DS+D + ++   +K+LS  + ND
Sbjct: 68  SLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGND 127

Query: 64  VEFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLV 123
             F++S+++TW+SAA TD  TC DG    AG+ +  K+K+ V+   V V R  SNAL+LV
Sbjct: 128 FTFRMSNVETWVSAALTDETTCMDGF---AGKGMDGKIKESVRAQVVAVARVTSNALALV 187

Query: 124 NNFNFK 128
           NNF  K
Sbjct: 188 NNFAAK 190

BLAST of Cla006265 vs. Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-08
Identity = 37/120 (30.83%), Postives = 61/120 (50.83%), Query Frame = 1

Query: 6   KAAQNATSIVSKL--SRKKVSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSNDVE 65
           KA ++    V KL   RK ++P E   L DC++ +++++DEL  A+  +    P+   + 
Sbjct: 103 KAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQY-PKQKSLR 162

Query: 66  FQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLVNN 124
                +KT +S+A T+  TC DG S        +KV+K +    V+V    SNAL+++ N
Sbjct: 163 KHADDLKTLISSAITNQGTCLDGFSYD---DADRKVRKALLKGQVHVEHMCSNALAMIKN 218

BLAST of Cla006265 vs. TrEMBL
Match: A0A0A0L671_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176250 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.1e-48
Identity = 101/127 (79.53%), Postives = 117/127 (92.13%), Query Frame = 1

Query: 1   MVSSLKAAQNATSIVSKLSRKKVSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSN 60
           MVSSLKAAQNATSI+SKLSR+K+S YEA+V+ DCIDNL DSVDELR+A  AIKSLS RS 
Sbjct: 78  MVSSLKAAQNATSIISKLSRRKMSAYEAEVIGDCIDNLKDSVDELRRASTAIKSLS-RSK 137

Query: 61  DVEFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSL 120
           DV+FQL+SIKTWMSAA+TDVITCTDGLSGG+G KVS+ +KK+VKNCS+NVVRQISNAL L
Sbjct: 138 DVDFQLNSIKTWMSAAQTDVITCTDGLSGGSGWKVSKMLKKDVKNCSINVVRQISNALFL 197

Query: 121 VNNFNFK 128
           +NNFN+K
Sbjct: 198 INNFNYK 203

BLAST of Cla006265 vs. TrEMBL
Match: A0A059DJ16_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02882 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.1e-22
Identity = 58/125 (46.40%), Postives = 94/125 (75.20%), Query Frame = 1

Query: 4   SLKAAQNATSIVSKLSRKK-VSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRS-ND 63
           SL+AA+N +S+V+ LS+K+ ++  EA +++DCI+NL D++DEL+Q+I  + ++S  + +D
Sbjct: 83  SLQAARNTSSLVTTLSKKRSLTKAEASIVKDCIENLGDTIDELKQSIKTMANVSSAAKDD 142

Query: 64  VEFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLV 123
           V FQ++++KTW+SAA TD ITCTDG+   A RKVS  VK+++++   NV R  SN LSL+
Sbjct: 143 VAFQMANVKTWVSAAITDEITCTDGI---AERKVSAGVKRKIQSYIENVARITSNGLSLI 202

Query: 124 NNFNF 127
           N+  +
Sbjct: 203 NSLKY 204

BLAST of Cla006265 vs. TrEMBL
Match: M5X0K1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011478mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.1e-22
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 1

Query: 4   SLKAAQNATSIVSKLSRKK-VSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSNDV 63
           +LKAA+NA+S+VSKL +   ++P E  V++DCI+N+ DS+DEL+Q+++++ +L    +DV
Sbjct: 88  TLKAAKNASSVVSKLYKNTGLTPSEKGVVKDCIENIKDSIDELKQSVSSMSNLGVSGSDV 147

Query: 64  EFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLVN 123
           + QL  IKTW+SA  TD  TCTDG     G KVS  VK  ++N  VN  R  SNALSL++
Sbjct: 148 QLQLDDIKTWVSAVITDDATCTDGFD---GVKVSAAVKTAIRNSIVNAARLASNALSLID 205

BLAST of Cla006265 vs. TrEMBL
Match: B9R9Q8_RICCO (21 kDa protein, putative OS=Ricinus communis GN=RCOM_1500020 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.3e-21
Identity = 61/124 (49.19%), Postives = 86/124 (69.35%), Query Frame = 1

Query: 4   SLKAAQNATSIVSKLSRKK-VSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSNDV 63
           +LKAA N +++V  LS++K +S  E  V++DC   + DSVDEL+Q++ A+K+L   S D+
Sbjct: 87  TLKAASNTSAMVKSLSKQKGLSKGEVAVIKDCQYEIEDSVDELKQSLKALKNLKG-SADM 146

Query: 64  EFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLVN 123
           EFQ+ +IKTW+SAA TD  TCTDG     G KVS KVK ++K   VNV R  SNAL+L+N
Sbjct: 147 EFQIDNIKTWISAAITDENTCTDGFE---GMKVSSKVKSKIKKSIVNVNRLTSNALALIN 206

Query: 124 NFNF 127
             ++
Sbjct: 207 KLSY 206

BLAST of Cla006265 vs. TrEMBL
Match: A5BT23_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005236 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.2e-20
Identity = 55/123 (44.72%), Postives = 85/123 (69.11%), Query Frame = 1

Query: 4   SLKAAQNATSIVSKL-SRKKVSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSNDV 63
           SLKAA+NA+S ++ L  RK ++  E  +++DC++N  D +DEL+Q++   KSL    N V
Sbjct: 87  SLKAARNASSTITLLLERKGMTRMETSIVKDCVENFGDCIDELQQSLQEFKSLGGGKN-V 146

Query: 64  EFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLVN 123
            FQ+++IKTW+SAA TD  TC+DG     G+KVS  +++++KN   NV +  SNAL+L+N
Sbjct: 147 AFQMANIKTWVSAALTDEYTCSDGFE---GQKVSSSLQQQIKNYISNVAKITSNALALIN 205

Query: 124 NFN 126
           N +
Sbjct: 207 NLS 205

BLAST of Cla006265 vs. NCBI nr
Match: gi|449460810|ref|XP_004148137.1| (PREDICTED: 21 kDa protein-like [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 5.9e-48
Identity = 101/127 (79.53%), Postives = 117/127 (92.13%), Query Frame = 1

Query: 1   MVSSLKAAQNATSIVSKLSRKKVSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSN 60
           MVSSLKAAQNATSI+SKLSR+K+S YEA+V+ DCIDNL DSVDELR+A  AIKSLS RS 
Sbjct: 78  MVSSLKAAQNATSIISKLSRRKMSAYEAEVIGDCIDNLKDSVDELRRASTAIKSLS-RSK 137

Query: 61  DVEFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSL 120
           DV+FQL+SIKTWMSAA+TDVITCTDGLSGG+G KVS+ +KK+VKNCS+NVVRQISNAL L
Sbjct: 138 DVDFQLNSIKTWMSAAQTDVITCTDGLSGGSGWKVSKMLKKDVKNCSINVVRQISNALFL 197

Query: 121 VNNFNFK 128
           +NNFN+K
Sbjct: 198 INNFNYK 203

BLAST of Cla006265 vs. NCBI nr
Match: gi|659077238|ref|XP_008439099.1| (PREDICTED: 21 kDa protein-like [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.9e-47
Identity = 100/127 (78.74%), Postives = 116/127 (91.34%), Query Frame = 1

Query: 1   MVSSLKAAQNATSIVSKLSRKKVSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSN 60
           MVSSLKAAQNATSI+SKLSR+K+S YE +V+ DCID+L DSVDELR+A  AIKSLS RS 
Sbjct: 77  MVSSLKAAQNATSIISKLSRRKMSAYETEVIGDCIDDLKDSVDELRRASTAIKSLS-RSK 136

Query: 61  DVEFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSL 120
           DV+FQL+SIKTW SAA TD+ITCTDGLSGG+G KV++KVKKEVKNCS+NVVRQISNALSL
Sbjct: 137 DVDFQLNSIKTWTSAALTDIITCTDGLSGGSGWKVNKKVKKEVKNCSINVVRQISNALSL 196

Query: 121 VNNFNFK 128
           +NNFN+K
Sbjct: 197 INNFNYK 202

BLAST of Cla006265 vs. NCBI nr
Match: gi|645257369|ref|XP_008234383.1| (PREDICTED: 21 kDa protein-like [Prunus mume])

HSP 1 Score: 114.8 bits (286), Expect = 1.1e-22
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 1

Query: 4   SLKAAQNATSIVSKLSRKK-VSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSNDV 63
           +LKAA+NA+S+VSKL +   ++P E  V++DCIDN+ DS+DEL+Q+++++ +L    +DV
Sbjct: 88  TLKAAKNASSVVSKLYKNTGLTPSEKGVVKDCIDNIKDSIDELKQSVSSMSNLGVSGSDV 147

Query: 64  EFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLVN 123
           + QL  IKTW+SA  TD  TCTDG     G KVS  VK  +KN  VN  R  SNALSL++
Sbjct: 148 QLQLDDIKTWVSAVITDDATCTDGFD---GVKVSTAVKTAIKNSIVNAARLASNALSLID 205

BLAST of Cla006265 vs. NCBI nr
Match: gi|596006013|ref|XP_007218408.1| (hypothetical protein PRUPE_ppa011478mg [Prunus persica])

HSP 1 Score: 112.1 bits (279), Expect = 7.3e-22
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 1

Query: 4   SLKAAQNATSIVSKLSRKK-VSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRSNDV 63
           +LKAA+NA+S+VSKL +   ++P E  V++DCI+N+ DS+DEL+Q+++++ +L    +DV
Sbjct: 88  TLKAAKNASSVVSKLYKNTGLTPSEKGVVKDCIENIKDSIDELKQSVSSMSNLGVSGSDV 147

Query: 64  EFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLVN 123
           + QL  IKTW+SA  TD  TCTDG     G KVS  VK  ++N  VN  R  SNALSL++
Sbjct: 148 QLQLDDIKTWVSAVITDDATCTDGFD---GVKVSAAVKTAIRNSIVNAARLASNALSLID 205

BLAST of Cla006265 vs. NCBI nr
Match: gi|702250962|ref|XP_010062106.1| (PREDICTED: 21 kDa protein [Eucalyptus grandis])

HSP 1 Score: 112.1 bits (279), Expect = 7.3e-22
Identity = 58/125 (46.40%), Postives = 94/125 (75.20%), Query Frame = 1

Query: 4   SLKAAQNATSIVSKLSRKK-VSPYEAQVLRDCIDNLNDSVDELRQAIAAIKSLSPRS-ND 63
           SL+AA+N +S+V+ LS+K+ ++  EA +++DCI+NL D++DEL+Q+I  + ++S  + +D
Sbjct: 83  SLQAARNTSSLVTTLSKKRSLTKAEASIVKDCIENLGDTIDELKQSIKTMANVSSAAKDD 142

Query: 64  VEFQLSSIKTWMSAAETDVITCTDGLSGGAGRKVSQKVKKEVKNCSVNVVRQISNALSLV 123
           V FQ++++KTW+SAA TD ITCTDG+   A RKVS  VK+++++   NV R  SN LSL+
Sbjct: 143 VAFQMANVKTWVSAAITDEITCTDGI---AERKVSAGVKRKIQSYIENVARITSNGLSLI 202

Query: 124 NNFNF 127
           N+  +
Sbjct: 203 NSLKY 204

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
21KD_DAUCA3.0e-1537.3021 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME2_ARATH7.8e-0830.83Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2[more]
Match NameE-valueIdentityDescription
A0A0A0L671_CUCSA4.1e-4879.53Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176250 PE=4 SV=1[more]
A0A059DJ16_EUCGR5.1e-2246.40Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02882 PE=4 SV=1[more]
M5X0K1_PRUPE5.1e-2247.93Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011478mg PE=4 SV=1[more]
B9R9Q8_RICCO3.3e-2149.1921 kDa protein, putative OS=Ricinus communis GN=RCOM_1500020 PE=4 SV=1[more]
A5BT23_VITVI6.2e-2044.72Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005236 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449460810|ref|XP_004148137.1|5.9e-4879.53PREDICTED: 21 kDa protein-like [Cucumis sativus][more]
gi|659077238|ref|XP_008439099.1|2.9e-4778.74PREDICTED: 21 kDa protein-like [Cucumis melo][more]
gi|645257369|ref|XP_008234383.1|1.1e-2249.59PREDICTED: 21 kDa protein-like [Prunus mume][more]
gi|596006013|ref|XP_007218408.1|7.3e-2247.93hypothetical protein PRUPE_ppa011478mg [Prunus persica][more]
gi|702250962|ref|XP_010062106.1|7.3e-2246.40PREDICTED: 21 kDa protein [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006501Pectinesterase_inhib_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004857enzyme inhibitor activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043086 negative regulation of catalytic activity
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004857 enzyme inhibitor activity
molecular_function GO:0030599 pectinesterase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006265Cla006265.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006501Pectinesterase inhibitor domainGENE3DG3DSA:1.20.140.40coord: 4..124
score: 9.1
IPR006501Pectinesterase inhibitor domainPFAMPF04043PMEIcoord: 4..120
score: 8.4
IPR006501Pectinesterase inhibitor domainSMARTSM00856PMEI_2coord: 1..120
score: 1.8
IPR006501Pectinesterase inhibitor domainTIGRFAMsTIGR01614TIGR01614coord: 4..123
score: 5.3
IPR006501Pectinesterase inhibitor domainunknownSSF101148Plant invertase/pectin methylesterase inhibitorcoord: 5..124
score: 5.89
NoneNo IPR availableunknownCoilCoilcoord: 28..55
scor
NoneNo IPR availablePANTHERPTHR31080FAMILY NOT NAMEDcoord: 4..123
score: 1.0
NoneNo IPR availablePANTHERPTHR31080:SF15SUBFAMILY NOT NAMEDcoord: 4..123
score: 1.0

The following gene(s) are paralogous to this gene:

None