Lsi05G013180 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTTAAACTAAACACATGTATTCCATTTTTCATGTTTAAATTTCTATGTTAATGTCTTCATGACAAATTATAAAAACTTATGAAAAGATAACTTCTCATGAACCGATTTCTTCAAATATTAGAAAATGTTAATGTCTATCTTTAAAGCCATGTTTTTATGGGAAATTGACATTATCTTTAAAAAAAAAAAAAAAATCCATTAAGAAACTAAAACCATAAACCACCAACAACCATAACCCACATCATCCTCTTTTCAAAAGTAAGAGGAACAATATAAGTTAGAAAGACATCTTTTCAGACTCGGGAGAACCCAGAAGAGAAGGTTAAATATGCTAAATTGTGGGCAACTTTGTTCTCCACTACAAGAAATAACATATACGATAGCTAACGGAAAAAAAAAAACTATAATAGACCTTTTATAGCCTTTTTCGAAAGTCCTGACAACCTATGTTATTAAAAGTCTGAGACGTTCCACAACATCAATTTCAACATTCACTAGAAGATTTTAGTCATGCTATTGACAAACGATGATAAATTCGAGGTAGTTAAGTCGTTTAAAGATATTTCATGCATCTAAGAATGTAAAATTTCTAGTCACAAATGTGAATACCTTCTCAAATTTTTTCTTTCAAACATGTGGCATGTTTTCCGCACCTATAAATATGGTAAAAATCTCCCTTATCTTCATTATTATAACAAAGACAAGCCTAATAGATTCTTTAGAGAGAGACAGAGGGAGATGGAATCTCAAATCCTAAAATCCTTACAAACCCTTTTCTTCTTTATTATTTTAACTACATTCACCACCTCCGCCGTGGCCTCTTCTTCCTCCTCCACCGTCCGGCCAGTACAACCACACATCAGAAAGGCCTGCAAGCCGACGCCATATCCACGCCTTTGCGAGACTGCACTCTCCTTATACGCTTCACAAACCAAAAGAAACCAGCAAGAGCTCTGCAGGGCGGCCATGGCTTCTTCTCTCAAAGCTGCACAAAACGCCACCTCCATCATCTCCAAGCTCTCCCGTCGGAAGGTATCGCCCTATGAAGCCGAAGTCATCGGAGATTGCATCGATAATCTCAATGACTCTGTCGATGAGCTCCGTCGAGCTGCCGCTGCCATCAAAAGCTTGAGTCGTTCTAACGACGTGGAGTTTCAAGTTGTTAAAAACTACTACTTAATCTCATGGTTATTTAAGTTAAAAAACACTTTTAATCTCAAAACTTTCATTAAAGTAACAGTTTATAATTTAATCTTTATACTCTCAAATTTGTAACAATTTAATCCTCTGAACTTTAATAATTAACGTTTTAGTCCTTTTACTTTACTATTTATAATGATTTAGCCTCTAACGTAAAAAAATTCATCAAAATTAAGTGTTAATTTTTATTACATAATGACTCGAGTCTTTTGTACTAATATTTTTTACCATAGGAACTAAATCACTATAAATTGTAAAGTACATAGACTAAATTGTTATTTATTAAAGTTGAGGGGCTAAATTATTACAAATTTAAAAGTAGAAAAACTAAATTGTTATCAGCTAAAATTTAAAGATCAAATTGTTATTTTCATGAAATTTCAAGGACCAAAAGTATTTTTTAATTTAAAAATTTTACGTATACGTGTGTTGTATGTGAATAAAAATTTGAACTTACAATATTTGAAAAAAAAATCGAGATATGTTAATCGCTAATATTTTCTTTTGATAAATACTCTTTAAAAAATCATGGAAATCAAAATAACTTTATATCTAACCTTTTAAGTAAAGTTAAGAATTCTTGTTGTTTAAGATTATATTCACATGATGTGGTCTAATTCAAATATTACTTTCTAAGTCTAAAGTTTTAATCTAGATTAGGTTAAACTTAATCTTTTATTCATATTCTTAACGCAGTTGAGTAGTATAAAAACATGGGCGAGCGCAGCACTGACCGATGTTATCACGTGCACCGACGGGTTGAGCGGCGGCTCGGGGTGGAAGGTGAGATCGAAGTTGAAGAAAGAAGTCAAGAATTGTAGTGCGAATGTAGTAAGGCAGATTAGTAATGCCTTGTTTCTCATCAACAACTTCAACTACAAATAGTGTGAGCTCTGAGTAGTTTTTGAAAGAAACTTCCATGGCCACACCCATTAAACTCACTTGGAACTTGTTCCAAATGAATTCATTTTCCTTTGTAGTTCCACCTTCCATTAAAAAAAAGTATAAAATATGTTTCTTTTTGTGTGTTTTTTTTTTATCATGTGAATTCTTTCCTTAATTTCTCAATGTCTTTTTGGGTATATACATAATTACAATTTCATCACTTTAAATAGTTATACTTCTAAATTTTACATTTACATTTTTTTAATAAATAATACTTCAATGCATTTCAATCTTCA ATGCACAAGCCTAATAGATTCTTTAGAGAGAGACAGAGGGAGATGGAATCTCAAATCCTAAAATCCTTACAAACCCTTTTCTTCTTTATTATTTTAACTACATTCACCACCTCCGCCGTGGCCTCTTCTTCCTCCTCCACCGTCCGGCCAGTACAACCACACATCAGAAAGGCCTGCAAGCCGACGCCATATCCACGCCTTTGCGAGACTGCACTCTCCTTATACGCTTCACAAACCAAAAGAAACCAGCAAGAGCTCTGCAGGGCGGCCATGGCTTCTTCTCTCAAAGCTGCACAAAACGCCACCTCCATCATCTCCAAGCTCTCCCGTCGGAAGGTATCGCCCTATGAAGCCGAAGTCATCGGAGATTGCATCGATAATCTCAATGACTCTGTCGATGAGCTCCGTCGAGCTGCCGCTGCCATCAAAAGCTTGAGTCTAAAGTTAAGAATTCTTTTGAGTAGTATAAAAACATGGGCGAGCGCAGCACTGACCGATGTTATCACGTGCACCGACGGGTTGAGCGGCGGCTCGGGGTGGAAGGTGAGATCGAAGTTGAAGAAAGAAGTCAAGAATTGTAGTGCGAATGTAGTAAGGCAGATTAGTAATGCCTTGTTTCTCATCAACAACTTCAACTACAAATAGTGTGAGCTCTGAGTAGTTTTTGAAAGAAACTTCCATGGCCACACCCATTAAACTCACTTGGAACTTGTTCCAAATGAATTCATTTTCCTTTGTAGTTCCACCTTCCATTAAAAAAAAGTATAAAATATGTTTCTTTTTGTGTGTTTTTTTTTTATCATGTGAATTCTTTCCTTAATTTCTCAATGTCTTTTTGGGTATATACATAATTACAATTTCATCACTTTAAATAGTTATACTTCTAAATTTTACATTTACATTTTTTTAATAAATAATACTTCAATGCATTTCAATCTTCA ATGCACAAGCCTAATAGATTCTTTAGAGAGAGACAGAGGGAGATGGAATCTCAAATCCTAAAATCCTTACAAACCCTTTTCTTCTTTATTATTTTAACTACATTCACCACCTCCGCCGTGGCCTCTTCTTCCTCCTCCACCGTCCGGCCAGTACAACCACACATCAGAAAGGCCTGCAAGCCGACGCCATATCCACGCCTTTGCGAGACTGCACTCTCCTTATACGCTTCACAAACCAAAAGAAACCAGCAAGAGCTCTGCAGGGCGGCCATGGCTTCTTCTCTCAAAGCTGCACAAAACGCCACCTCCATCATCTCCAAGCTCTCCCGTCGGAAGGTATCGCCCTATGAAGCCGAAGTCATCGGAGATTGCATCGATAATCTCAATGACTCTGTCGATGAGCTCCGTCGAGCTGCCGCTGCCATCAAAAGCTTGAGTCTAAAGTTAAGAATTCTTTTGAGTAGTATAAAAACATGGGCGAGCGCAGCACTGACCGATGTTATCACGTGCACCGACGGGTTGAGCGGCGGCTCGGGGTGGAAGGTGAGATCGAAGTTGAAGAAAGAAGTCAAGAATTGTAGTGCGAATGTAGTAAGGCAGATTAGTAATGCCTTGTTTCTCATCAACAACTTCAACTACAAATAG MHKPNRFFRERQREMESQILKSLQTLFFFIILTTFTTSAVASSSSSTVRPVQPHIRKACKPTPYPRLCETALSLYASQTKRNQQELCRAAMASSLKAAQNATSIISKLSRRKVSPYEAEVIGDCIDNLNDSVDELRRAAAAIKSLSLKLRILLSSIKTWASAALTDVITCTDGLSGGSGWKVRSKLKKEVKNCSANVVRQISNALFLINNFNYK
BLAST of Lsi05G013180 vs. Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 2.8e-18 Identity = 67/198 (33.84%), Postives = 101/198 (51.01%), Query Frame = 1
BLAST of Lsi05G013180 vs. Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2) HSP 1 Score: 56.6 bits (135), Expect = 3.8e-07 Identity = 53/208 (25.48%), Postives = 100/208 (48.08%), Query Frame = 1
BLAST of Lsi05G013180 vs. Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.5e-06 Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = 1
BLAST of Lsi05G013180 vs. TrEMBL
Match: A0A0A0L671_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G176250 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 3.3e-82 Identity = 176/204 (86.27%), Postives = 181/204 (88.73%), Query Frame = 1
BLAST of Lsi05G013180 vs. TrEMBL
Match: M5X0K1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011478mg PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 9.8e-26 Identity = 76/198 (38.38%), Postives = 120/198 (60.61%), Query Frame = 1
BLAST of Lsi05G013180 vs. TrEMBL
Match: B9R9Q8_RICCO (21 kDa protein, putative OS=Ricinus communis GN=RCOM_1500020 PE=4 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 8.3e-25 Identity = 81/209 (38.76%), Postives = 126/209 (60.29%), Query Frame = 1
BLAST of Lsi05G013180 vs. TrEMBL
Match: F6HAT8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g00940 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24 Identity = 83/210 (39.52%), Postives = 127/210 (60.48%), Query Frame = 1
BLAST of Lsi05G013180 vs. TrEMBL
Match: A0A059DJ16_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02882 PE=4 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 2.4e-24 Identity = 76/203 (37.44%), Postives = 128/203 (63.05%), Query Frame = 1
BLAST of Lsi05G013180 vs. TAIR10
Match: AT4G25250.1 (AT4G25250.1 Plant invertase/pectin methylesterase inhibitor superfamily protein) HSP 1 Score: 96.7 bits (239), Expect = 1.9e-20 Identity = 62/192 (32.29%), Postives = 106/192 (55.21%), Query Frame = 1
BLAST of Lsi05G013180 vs. TAIR10
Match: AT5G62350.1 (AT5G62350.1 Plant invertase/pectin methylesterase inhibitor superfamily protein) HSP 1 Score: 96.7 bits (239), Expect = 1.9e-20 Identity = 65/187 (34.76%), Postives = 103/187 (55.08%), Query Frame = 1
BLAST of Lsi05G013180 vs. TAIR10
Match: AT5G62360.1 (AT5G62360.1 Plant invertase/pectin methylesterase inhibitor superfamily protein) HSP 1 Score: 94.0 bits (232), Expect = 1.2e-19 Identity = 60/185 (32.43%), Postives = 104/185 (56.22%), Query Frame = 1
BLAST of Lsi05G013180 vs. TAIR10
Match: AT5G51520.1 (AT5G51520.1 Plant invertase/pectin methylesterase inhibitor superfamily protein) HSP 1 Score: 93.6 bits (231), Expect = 1.6e-19 Identity = 69/209 (33.01%), Postives = 112/209 (53.59%), Query Frame = 1
BLAST of Lsi05G013180 vs. TAIR10
Match: AT5G20740.1 (AT5G20740.1 Plant invertase/pectin methylesterase inhibitor superfamily protein) HSP 1 Score: 86.3 bits (212), Expect = 2.5e-17 Identity = 63/192 (32.81%), Postives = 97/192 (50.52%), Query Frame = 1
BLAST of Lsi05G013180 vs. NCBI nr
Match: gi|449460810|ref|XP_004148137.1| (PREDICTED: 21 kDa protein-like [Cucumis sativus]) HSP 1 Score: 312.8 bits (800), Expect = 4.7e-82 Identity = 176/204 (86.27%), Postives = 181/204 (88.73%), Query Frame = 1
BLAST of Lsi05G013180 vs. NCBI nr
Match: gi|659077238|ref|XP_008439099.1| (PREDICTED: 21 kDa protein-like [Cucumis melo]) HSP 1 Score: 308.9 bits (790), Expect = 6.8e-81 Identity = 172/203 (84.73%), Postives = 181/203 (89.16%), Query Frame = 1
BLAST of Lsi05G013180 vs. NCBI nr
Match: gi|470146900|ref|XP_004309057.1| (PREDICTED: 21 kDa protein-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26 Identity = 78/190 (41.05%), Postives = 119/190 (62.63%), Query Frame = 1
BLAST of Lsi05G013180 vs. NCBI nr
Match: gi|657945059|ref|XP_008377851.1| (PREDICTED: 21 kDa protein [Malus domestica]) HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26 Identity = 77/199 (38.69%), Postives = 124/199 (62.31%), Query Frame = 1
BLAST of Lsi05G013180 vs. NCBI nr
Match: gi|645257369|ref|XP_008234383.1| (PREDICTED: 21 kDa protein-like [Prunus mume]) HSP 1 Score: 125.9 bits (315), Expect = 8.2e-26 Identity = 77/198 (38.89%), Postives = 119/198 (60.10%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |